Wall clock time and date at job start Mon Mar 30 2020 03:21:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47208 * 179.97438 * 2 1
4 4 C 1.53001 * 109.46925 * 96.03401 * 3 2 1
5 5 H 1.09003 * 109.47257 * 54.99530 * 4 3 2
6 6 N 1.46898 * 109.46793 * 294.99493 * 4 3 2
7 7 C 1.50700 * 109.46906 * 175.00103 * 4 3 2
8 8 O 1.21280 * 120.00492 * 100.27606 * 7 4 3
9 9 N 1.34777 * 119.99504 * 279.99450 * 7 4 3
10 10 C 1.46504 * 119.99910 * 179.97438 * 9 7 4
11 11 C 1.52991 * 109.47389 * 178.34644 * 10 9 7
12 12 C 1.50703 * 115.55079 * 65.13977 * 11 10 9
13 13 H 1.07991 * 120.00487 * 265.41096 * 12 11 10
14 14 C 1.37879 * 119.99414 * 85.41224 * 12 11 10
15 15 N 1.31509 * 120.00440 * 353.56590 * 14 12 11
16 16 Si 1.86803 * 119.99580 * 173.56557 * 14 12 11
17 17 H 1.48496 * 109.47376 * 59.99737 * 16 14 12
18 18 H 1.48498 * 109.46983 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.47286 * 299.99818 * 16 14 12
20 20 C 1.53004 * 117.50040 * 279.47469 * 11 10 9
21 21 C 1.53000 * 117.50100 * 210.81489 * 11 10 9
22 22 H 4.44651 * 5.63340 * 180.02562 * 4 1 2
23 23 H 1.08995 * 109.47060 * 336.03307 * 3 2 1
24 24 H 1.08999 * 109.46567 * 216.02983 * 3 2 1
25 25 H 1.00896 * 111.00781 * 300.00417 * 6 4 3
26 26 H 1.00906 * 111.00268 * 63.95836 * 6 4 3
27 27 H 0.96994 * 120.00705 * 0.02562 * 9 7 4
28 28 H 1.09001 * 109.46928 * 298.35131 * 10 9 7
29 29 H 1.09003 * 109.46944 * 58.34787 * 10 9 7
30 30 H 0.96996 * 120.00638 * 185.07383 * 15 14 12
31 31 H 1.09001 * 117.50072 * 359.97438 * 20 11 10
32 32 H 1.09005 * 117.49847 * 145.02060 * 20 11 10
33 33 H 1.09001 * 117.49749 * 214.97500 * 21 11 10
34 34 H 1.08997 * 117.50167 * 359.97182 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 6 3.1559 0.1525 -1.4345
5 1 2.7208 1.0461 -1.8821
6 7 2.7679 -1.0270 -2.2195
7 6 4.6578 0.2765 -1.4233
8 8 5.3478 -0.6862 -1.6840
9 7 5.2341 1.4588 -1.1291
10 6 6.6941 1.5793 -1.1176
11 6 7.0842 3.0235 -0.7971
12 6 6.7101 3.5074 0.5802
13 1 5.7842 4.0421 0.7318
14 6 7.5501 3.2674 1.6469
15 7 8.6131 2.5093 1.4893
16 14 7.1783 4.0192 3.3161
17 1 5.8532 3.5441 3.7889
18 1 8.2252 3.6112 4.2870
19 1 7.1605 5.4995 3.1994
20 6 7.0344 4.0391 -1.9403
21 6 8.3840 3.5555 -1.4039
22 1 -1.0500 0.0002 0.0001
23 1 3.0098 -0.9382 0.4174
24 1 3.0089 0.8319 0.6045
25 1 3.1590 -1.8690 -1.8245
26 1 1.7641 -1.0961 -2.2962
27 1 4.6823 2.2297 -0.9243
28 1 7.1076 0.9143 -0.3593
29 1 7.0890 1.3049 -2.0958
30 1 9.1633 2.2801 2.2545
31 1 6.7241 3.6783 -2.9210
32 1 6.7314 5.0574 -1.6961
33 1 8.9684 4.2558 -0.8071
34 1 8.9615 2.8765 -2.0312
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000404164825.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:15
Heat of formation + Delta-G solvation = 31.997726 kcal
Electronic energy + Delta-G solvation = -16414.198013 eV
Core-core repulsion = 13734.987237 eV
Total energy + Delta-G solvation = -2679.210776 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.39434 -36.87221 -35.75046 -33.30987 -32.54910 -32.00074 -28.82542 -26.65830
-25.40736 -23.44433 -21.19720 -19.69893 -19.22157 -18.35185 -17.16828 -16.30196
-15.36526 -15.05264 -14.69432 -14.63137 -14.17347 -13.88947 -13.71178 -13.34399
-12.81613 -12.59511 -11.98361 -11.65059 -11.59273 -11.02748 -10.95067 -10.58817
-10.57282 -10.28636 -10.28027 -9.68739 -9.36392 -8.99874 -8.69295 -8.52654
-8.29663 -8.09251 -6.10767 -4.19874 2.58889 2.70608 3.20129 3.23855
3.30529 3.31703 3.70799 4.27549 4.32427 4.72442 5.03359 5.07355
5.16693 5.21346 5.42489 5.64148 5.75175 5.87797 6.01973 6.32378
6.45403 6.55963 6.68555 6.85337 7.03731 7.08161 7.25969 7.40801
7.44288 7.46529 7.47566 7.78107 8.27207 8.31119 8.80490 8.85928
9.47089 10.97024
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021647 B = 0.007125 C = 0.005980
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.191467 B = 3928.806153 C = 4680.928249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.181 4.181
3 C -0.048 4.048
4 C 0.083 3.917
5 H 0.103 0.897
6 N -0.825 5.825
7 C 0.512 3.488
8 O -0.545 6.545
9 N -0.701 5.701
10 C 0.164 3.836
11 C 0.027 3.973
12 C -0.502 4.502
13 H 0.060 0.940
14 C 0.075 3.925
15 N -0.874 5.874
16 Si 0.890 3.110
17 H -0.277 1.277
18 H -0.287 1.287
19 H -0.276 1.276
20 C -0.211 4.211
21 C -0.148 4.148
22 H 0.218 0.782
23 H 0.093 0.907
24 H 0.103 0.897
25 H 0.351 0.649
26 H 0.343 0.657
27 H 0.400 0.600
28 H 0.072 0.928
29 H 0.038 0.962
30 H 0.263 0.737
31 H 0.066 0.934
32 H 0.078 0.922
33 H 0.083 0.917
34 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.639 -2.440 -2.879 12.236
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.226 4.226
2 C -0.181 4.181
3 C -0.087 4.087
4 C -0.033 4.033
5 H 0.121 0.879
6 N -0.356 5.356
7 C 0.295 3.705
8 O -0.422 6.422
9 N -0.350 5.350
10 C 0.041 3.959
11 C 0.026 3.974
12 C -0.540 4.540
13 H 0.078 0.922
14 C -0.130 4.130
15 N -0.510 5.510
16 Si 0.717 3.283
17 H -0.203 1.203
18 H -0.213 1.213
19 H -0.202 1.202
20 C -0.248 4.248
21 C -0.186 4.186
22 H 0.234 0.766
23 H 0.111 0.889
24 H 0.121 0.879
25 H 0.165 0.835
26 H 0.156 0.844
27 H 0.234 0.766
28 H 0.091 0.909
29 H 0.056 0.944
30 H 0.073 0.927
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.102 0.898
34 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -10.484 -2.815 -3.586 11.433
hybrid contribution -1.025 0.494 2.049 2.343
sum -11.509 -2.321 -1.537 11.841
Atomic orbital electron populations
1.24870 0.95843 1.01479 1.00453 1.22976 0.94236 1.00225 1.00709
1.19552 0.85296 1.05031 0.98791 1.21342 0.93799 0.96759 0.91373
0.87943 1.58528 1.15672 1.05336 1.56068 1.20139 0.89069 0.83606
0.77653 1.90652 1.64471 1.38037 1.49064 1.45968 1.09333 1.11177
1.68519 1.20999 0.77407 0.98581 0.98929 1.19036 0.97739 0.88558
0.92084 1.20303 1.05730 1.37347 0.90572 0.92221 1.24982 0.94509
0.94735 0.98745 1.69958 1.15466 1.34926 1.30631 0.86708 0.77975
0.79868 0.83721 1.20270 1.21262 1.20172 1.23031 1.03726 1.00160
0.97869 1.22491 0.90389 1.03191 1.02509 0.76561 0.88906 0.87863
0.83457 0.84352 0.76625 0.90938 0.94381 0.92739 0.91580 0.90350
0.89833 0.91644
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -2.10 19.25 29.55 0.57 -1.53 16
2 C -0.18 -2.13 12.51 -37.12 -0.46 -2.60 16
3 C -0.05 -0.60 5.34 -29.51 -0.16 -0.75 16
4 C 0.08 1.14 3.18 -68.87 -0.22 0.92 16
5 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16
6 N -0.82 -10.77 8.94 -5.65 -0.05 -10.82 16
7 C 0.51 9.29 7.08 -10.99 -0.08 9.21 16
8 O -0.54 -11.91 16.25 5.56 0.09 -11.82 16
9 N -0.70 -13.16 5.48 -60.29 -0.33 -13.49 16
10 C 0.16 3.66 5.50 -4.04 -0.02 3.64 16
11 C 0.03 0.61 1.38 -155.66 -0.21 0.40 16
12 C -0.50 -12.62 8.63 -34.44 -0.30 -12.92 16
13 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16
14 C 0.07 1.94 5.39 -17.82 -0.10 1.85 16
15 N -0.87 -23.93 12.91 55.43 0.72 -23.21 16
16 Si 0.89 20.22 29.55 -169.99 -5.02 15.19 16
17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16
18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16
19 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16
20 C -0.21 -4.32 9.96 -26.69 -0.27 -4.59 16
21 C -0.15 -3.34 9.42 -26.69 -0.25 -3.59 16
22 H 0.22 1.38 7.80 -54.09 -0.42 0.96 16
23 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16
24 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16
25 H 0.35 4.66 8.58 -39.29 -0.34 4.32 16
26 H 0.34 3.70 8.29 -39.29 -0.33 3.37 16
27 H 0.40 6.80 8.37 -40.82 -0.34 6.46 16
28 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16
29 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16
30 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16
31 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
32 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16
33 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16
34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16
LS Contribution 304.48 15.07 4.59 4.59
Total: -1.00 -29.39 304.48 -6.28 -35.67
By element:
Atomic # 1 Polarization: 18.64 SS G_CDS: -4.77 Total: 13.87 kcal
Atomic # 6 Polarization: -8.47 SS G_CDS: -1.50 Total: -9.97 kcal
Atomic # 7 Polarization: -47.86 SS G_CDS: 0.34 Total: -47.53 kcal
Atomic # 8 Polarization: -11.91 SS G_CDS: 0.09 Total: -11.82 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -29.39 -6.28 -35.67 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404164825.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.665 kcal
(2) G-P(sol) polarization free energy of solvation -29.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.278 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.668 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds