Wall clock time and date at job start Mon Mar 30 2020 03:21:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17397 * 1
3 3 C 1.47208 * 179.97438 * 2 1
4 4 C 1.53001 * 109.46925 * 96.03401 * 3 2 1
5 5 H 1.09003 * 109.47257 * 54.99530 * 4 3 2
6 6 N 1.46898 * 109.46793 * 294.99493 * 4 3 2
7 7 C 1.50700 * 109.46906 * 175.00103 * 4 3 2
8 8 O 1.21280 * 120.00492 * 100.27606 * 7 4 3
9 9 N 1.34777 * 119.99504 * 279.99450 * 7 4 3
10 10 C 1.46504 * 119.99910 * 179.97438 * 9 7 4
11 11 C 1.52991 * 109.47389 * 178.34644 * 10 9 7
12 12 C 1.50703 * 115.55079 * 65.13977 * 11 10 9
13 13 H 1.07991 * 120.00487 * 265.41096 * 12 11 10
14 14 C 1.37879 * 119.99414 * 85.41224 * 12 11 10
15 15 N 1.31509 * 120.00440 * 353.56590 * 14 12 11
16 16 Si 1.86803 * 119.99580 * 173.56557 * 14 12 11
17 17 H 1.48496 * 109.47376 * 59.99737 * 16 14 12
18 18 H 1.48498 * 109.46983 * 179.97438 * 16 14 12
19 19 H 1.48496 * 109.47286 * 299.99818 * 16 14 12
20 20 C 1.53004 * 117.50040 * 279.47469 * 11 10 9
21 21 C 1.53000 * 117.50100 * 210.81489 * 11 10 9
22 22 H 4.44651 * 5.63340 * 180.02562 * 4 1 2
23 23 H 1.08995 * 109.47060 * 336.03307 * 3 2 1
24 24 H 1.08999 * 109.46567 * 216.02983 * 3 2 1
25 25 H 1.00896 * 111.00781 * 300.00417 * 6 4 3
26 26 H 1.00906 * 111.00268 * 63.95836 * 6 4 3
27 27 H 0.96994 * 120.00705 * 0.02562 * 9 7 4
28 28 H 1.09001 * 109.46928 * 298.35131 * 10 9 7
29 29 H 1.09003 * 109.46944 * 58.34787 * 10 9 7
30 30 H 0.96996 * 120.00638 * 185.07383 * 15 14 12
31 31 H 1.09001 * 117.50072 * 359.97438 * 20 11 10
32 32 H 1.09005 * 117.49847 * 145.02060 * 20 11 10
33 33 H 1.09001 * 117.49749 * 214.97500 * 21 11 10
34 34 H 1.08997 * 117.50167 * 359.97182 * 21 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 6 3.1559 0.1525 -1.4345
5 1 2.7208 1.0461 -1.8821
6 7 2.7679 -1.0270 -2.2195
7 6 4.6578 0.2765 -1.4233
8 8 5.3478 -0.6862 -1.6840
9 7 5.2341 1.4588 -1.1291
10 6 6.6941 1.5793 -1.1176
11 6 7.0842 3.0235 -0.7971
12 6 6.7101 3.5074 0.5802
13 1 5.7842 4.0421 0.7318
14 6 7.5501 3.2674 1.6469
15 7 8.6131 2.5093 1.4893
16 14 7.1783 4.0192 3.3161
17 1 5.8532 3.5441 3.7889
18 1 8.2252 3.6112 4.2870
19 1 7.1605 5.4995 3.1994
20 6 7.0344 4.0391 -1.9403
21 6 8.3840 3.5555 -1.4039
22 1 -1.0500 0.0002 0.0001
23 1 3.0098 -0.9382 0.4174
24 1 3.0089 0.8319 0.6045
25 1 3.1590 -1.8690 -1.8245
26 1 1.7641 -1.0961 -2.2962
27 1 4.6823 2.2297 -0.9243
28 1 7.1076 0.9143 -0.3593
29 1 7.0890 1.3049 -2.0958
30 1 9.1633 2.2801 2.2545
31 1 6.7241 3.6783 -2.9210
32 1 6.7314 5.0574 -1.6961
33 1 8.9684 4.2558 -0.8071
34 1 8.9615 2.8765 -2.0312
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000404164825.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:21:15
Heat of formation + Delta-G solvation = 11.235037 kcal
Electronic energy + Delta-G solvation = -16415.098351 eV
Core-core repulsion = 13734.987237 eV
Total energy + Delta-G solvation = -2680.111113 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.86957 -38.57676 -36.94302 -34.94633 -33.95989 -33.46365 -29.90111 -28.26878
-27.27803 -24.77349 -22.94499 -21.34944 -20.85949 -19.23895 -18.50162 -18.01290
-16.86030 -16.66660 -16.26209 -16.04290 -15.61509 -15.24158 -14.85095 -14.61608
-14.49140 -14.01067 -13.59816 -13.42960 -12.99753 -12.90777 -12.78252 -12.38659
-12.03510 -11.49156 -11.44193 -11.14229 -10.91044 -10.84720 -10.44905 -10.05621
-9.85440 -9.70782 -8.08979 -6.22343 1.43695 1.45824 1.51808 1.55846
1.88589 1.93622 2.30180 2.43468 3.19231 3.37990 3.50572 3.69789
3.95034 4.01715 4.07661 4.26684 4.56567 4.63354 4.66744 4.73730
4.76259 5.00504 5.04568 5.13419 5.28036 5.58224 5.60846 5.68376
5.78886 6.00540 6.37525 6.49009 6.66610 6.77023 6.85746 7.37753
7.47420 8.98481
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.021647 B = 0.007125 C = 0.005980
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1293.191467 B = 3928.806153 C = 4680.928249
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.226 4.226
3 C -0.039 4.039
4 C 0.098 3.902
5 H 0.122 0.878
6 N -0.829 5.829
7 C 0.509 3.491
8 O -0.585 6.585
9 N -0.696 5.696
10 C 0.180 3.820
11 C 0.005 3.995
12 C -0.504 4.504
13 H 0.066 0.934
14 C 0.026 3.974
15 N -0.908 5.908
16 Si 0.948 3.052
17 H -0.269 1.269
18 H -0.293 1.293
19 H -0.271 1.271
20 C -0.177 4.177
21 C -0.160 4.160
22 H 0.252 0.748
23 H 0.085 0.915
24 H 0.097 0.903
25 H 0.349 0.651
26 H 0.358 0.642
27 H 0.410 0.590
28 H 0.031 0.969
29 H 0.034 0.966
30 H 0.259 0.741
31 H 0.088 0.912
32 H 0.087 0.913
33 H 0.063 0.937
34 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.271 -1.633 -3.117 14.698
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.226 4.226
3 C -0.078 4.078
4 C -0.018 4.018
5 H 0.139 0.861
6 N -0.362 5.362
7 C 0.295 3.705
8 O -0.465 6.465
9 N -0.345 5.345
10 C 0.055 3.945
11 C 0.004 3.996
12 C -0.542 4.542
13 H 0.084 0.916
14 C -0.175 4.175
15 N -0.546 5.546
16 Si 0.774 3.226
17 H -0.194 1.194
18 H -0.219 1.219
19 H -0.196 1.196
20 C -0.214 4.214
21 C -0.199 4.199
22 H 0.268 0.732
23 H 0.104 0.896
24 H 0.115 0.885
25 H 0.163 0.837
26 H 0.174 0.826
27 H 0.246 0.754
28 H 0.049 0.951
29 H 0.052 0.948
30 H 0.068 0.932
31 H 0.107 0.893
32 H 0.105 0.895
33 H 0.082 0.918
34 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -13.166 -1.981 -3.828 13.854
hybrid contribution -0.262 0.222 2.084 2.112
sum -13.428 -1.759 -1.745 13.655
Atomic orbital electron populations
1.25720 0.96570 0.99114 0.97955 1.22902 0.94311 1.02393 1.02960
1.19320 0.86504 1.04462 0.97522 1.21193 0.90053 0.97866 0.92679
0.86058 1.58512 1.16874 1.04949 1.55876 1.20950 0.91001 0.82481
0.76034 1.90632 1.65969 1.39232 1.50691 1.45841 1.07953 1.12105
1.68619 1.20551 0.79439 0.97308 0.97158 1.19077 0.98561 0.89424
0.92538 1.20633 1.05601 1.36470 0.91511 0.91627 1.25689 0.94552
0.95185 1.02051 1.70091 1.16650 1.36613 1.31217 0.85776 0.77744
0.79178 0.79897 1.19448 1.21886 1.19602 1.23018 1.00951 0.99705
0.97702 1.22430 0.90979 1.03413 1.03031 0.73169 0.89648 0.88501
0.83728 0.82636 0.75376 0.95073 0.94779 0.93214 0.89345 0.89477
0.91829 0.91220
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.92 19.25 74.32 1.43 -1.48 16
2 C -0.23 -4.78 12.51 31.13 0.39 -4.39 16
3 C -0.04 -0.93 5.34 28.79 0.15 -0.78 16
4 C 0.10 2.54 3.18 44.17 0.14 2.68 16
5 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16
6 N -0.83 -20.49 8.94 -171.80 -1.54 -22.03 16
7 C 0.51 18.38 7.08 87.66 0.62 19.00 16
8 O -0.58 -25.99 16.25 -3.03 -0.05 -26.04 16
9 N -0.70 -25.88 5.48 -463.06 -2.54 -28.42 16
10 C 0.18 8.15 5.50 86.38 0.48 8.63 16
11 C 0.00 0.22 1.38 -52.93 -0.07 0.14 16
12 C -0.50 -25.16 8.63 25.60 0.22 -24.94 16
13 H 0.07 3.13 7.82 -2.92 -0.02 3.10 16
14 C 0.03 1.36 5.39 84.66 0.46 1.81 16
15 N -0.91 -50.90 12.91 21.45 0.28 -50.62 16
16 Si 0.95 41.46 29.55 68.60 2.03 43.49 16
17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16
18 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16
19 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16
20 C -0.18 -6.92 9.96 30.62 0.30 -6.62 16
21 C -0.16 -7.26 9.42 30.62 0.29 -6.97 16
22 H 0.25 1.99 7.80 -4.42 -0.03 1.95 16
23 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
24 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16
25 H 0.35 9.03 8.58 -89.70 -0.77 8.26 16
26 H 0.36 6.94 8.29 -89.69 -0.74 6.20 16
27 H 0.41 13.46 8.37 -92.71 -0.78 12.69 16
28 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16
29 H 0.03 1.55 8.09 -2.39 -0.02 1.53 16
30 H 0.26 14.08 8.32 -92.71 -0.77 13.30 16
31 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16
32 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16
33 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16
34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16
Total: -1.00 -63.40 304.48 1.42 -61.98
By element:
Atomic # 1 Polarization: 35.73 SS G_CDS: -1.17 Total: 34.56 kcal
Atomic # 6 Polarization: -17.33 SS G_CDS: 4.41 Total: -12.92 kcal
Atomic # 7 Polarization: -97.27 SS G_CDS: -3.79 Total: -101.07 kcal
Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal
Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal
Total: -63.40 1.42 -61.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000404164825.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.215 kcal
(2) G-P(sol) polarization free energy of solvation -63.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.980 kcal
(6) G-S(sol) free energy of system = (1) + (5) 11.235 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds