Wall clock time and date at job start Mon Mar 30 2020 03:44:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.47192 * 2 1
4 4 C 1.50699 * 109.46805 * 240.00299 * 2 1 3
5 5 H 1.08010 * 119.99609 * 239.99550 * 4 2 1
6 6 C 1.37878 * 120.00348 * 60.00091 * 4 2 1
7 7 N 1.31505 * 120.00045 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99729 * 179.97438 * 6 4 2
9 9 H 1.48490 * 109.47219 * 90.00096 * 8 6 4
10 10 H 1.48504 * 109.46673 * 209.99789 * 8 6 4
11 11 H 1.48500 * 109.47269 * 329.99893 * 8 6 4
12 12 N 1.46493 * 109.46836 * 120.00144 * 2 1 3
13 13 C 1.46494 * 120.00444 * 59.72574 * 12 2 1
14 14 C 1.34784 * 119.99864 * 239.99864 * 12 2 1
15 15 O 1.21283 * 119.99649 * 359.72839 * 14 12 2
16 16 C 1.50694 * 119.99988 * 179.72721 * 14 12 2
17 17 C 1.53001 * 109.47168 * 179.97438 * 16 14 12
18 18 C 1.47205 * 115.54870 * 34.33218 * 17 16 14
19 19 N 5.26043 * 110.65381 * 56.55705 * 2 1 3
20 20 C 1.53001 * 117.50092 * 248.62456 * 17 16 14
21 21 C 1.52996 * 117.49969 * 179.97438 * 17 16 14
22 22 H 1.09001 * 109.47192 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.47559 * 299.99953 * 1 2 3
24 24 H 1.09007 * 109.47281 * 60.00212 * 1 2 3
25 25 H 0.96997 * 120.00139 * 179.97438 * 7 6 4
26 26 H 1.08995 * 109.47693 * 270.27497 * 13 12 2
27 27 H 1.09003 * 109.47006 * 30.27410 * 13 12 2
28 28 H 1.09004 * 109.47665 * 150.27102 * 13 12 2
29 29 H 1.08998 * 109.47224 * 299.99701 * 16 14 12
30 30 H 1.09002 * 109.47054 * 60.00213 * 16 14 12
31 31 H 1.08999 * 117.49902 * 359.97438 * 20 17 16
32 32 H 1.08996 * 117.50038 * 145.01886 * 20 17 16
33 33 H 1.09004 * 117.49890 * 214.97776 * 21 17 16
34 34 H 1.08999 * 117.50020 * 359.97438 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4828
7 7 0.9428 0.8297 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.3448 -2.1614 -4.4124
10 1 2.4872 -0.1401 -5.1121
11 1 3.6308 -1.7566 -3.7120
12 7 2.0182 -0.6906 1.1961
13 6 1.6594 -2.0914 1.4310
14 6 2.7931 -0.0356 2.0834
15 8 3.0902 1.1241 1.8889
16 6 3.2903 -0.7442 3.3169
17 6 4.1420 0.2169 4.1488
18 6 3.7158 1.6257 4.1251
19 7 3.3855 2.7127 4.1074
20 6 5.6429 -0.0662 4.2386
21 6 4.7425 -0.3174 5.4505
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3634 0.5138 -0.8901
25 1 0.7087 1.1613 -3.4844
26 1 0.7311 -2.1382 2.0003
27 1 1.5251 -2.5973 0.4749
28 1 2.4550 -2.5811 1.9926
29 1 2.4401 -1.0824 3.9092
30 1 3.8939 -1.6033 3.0240
31 1 6.0235 -0.9373 3.7055
32 1 6.3150 0.7908 4.2801
33 1 4.8227 0.3744 6.2890
34 1 4.5306 -1.3535 5.7146
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000590216500.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:04
Heat of formation + Delta-G solvation = 20.796338 kcal
Electronic energy + Delta-G solvation = -16739.206727 eV
Core-core repulsion = 14059.510222 eV
Total energy + Delta-G solvation = -2679.696504 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.66526 -37.81292 -35.33802 -35.02791 -32.90109 -30.32096 -28.44575 -26.09711
-25.22255 -23.33026 -22.66157 -21.18444 -18.59839 -17.08006 -16.47535 -16.20852
-15.17578 -14.94002 -14.90542 -14.14509 -13.56031 -13.35556 -12.81150 -12.66094
-12.44821 -12.37204 -11.98080 -11.80821 -11.61434 -11.51526 -11.32686 -11.06104
-10.82856 -10.72773 -10.62064 -10.27546 -10.17455 -10.03390 -9.18687 -8.89939
-8.43184 -7.61055 -6.07569 -4.16085 2.88659 3.25117 3.26024 3.31758
3.33994 3.37168 3.79548 3.94093 4.14780 4.37500 4.52911 4.77908
4.90377 5.23257 5.33340 5.40087 5.47297 5.56945 5.65445 5.70184
5.82986 5.90829 6.00934 6.33636 6.75278 6.82902 7.06120 7.40257
7.53271 7.70807 8.00939 8.14193 8.19463 8.50598 8.81928 9.02349
9.50363 10.97801
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033811 B = 0.006382 C = 0.006226
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.938626 B = 4386.128493 C = 4496.449245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.258 3.742
3 H 0.063 0.937
4 C -0.526 4.526
5 H 0.060 0.940
6 C 0.064 3.936
7 N -0.887 5.887
8 Si 0.899 3.101
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.274 1.274
12 N -0.591 5.591
13 C 0.082 3.918
14 C 0.497 3.503
15 O -0.541 6.541
16 C -0.100 4.100
17 C -0.029 4.029
18 C 0.255 3.745
19 N -0.431 5.431
20 C -0.146 4.146
21 C -0.150 4.150
22 H 0.029 0.971
23 H 0.010 0.990
24 H 0.093 0.907
25 H 0.263 0.737
26 H 0.043 0.957
27 H 0.081 0.919
28 H 0.055 0.945
29 H 0.100 0.900
30 H 0.106 0.894
31 H 0.112 0.888
32 H 0.102 0.898
33 H 0.102 0.898
34 H 0.113 0.887
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.254 -9.154 12.946 16.704
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.157 3.843
3 H 0.080 0.920
4 C -0.565 4.565
5 H 0.078 0.922
6 C -0.138 4.138
7 N -0.525 5.525
8 Si 0.727 3.273
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.199 1.199
12 N -0.322 5.322
13 C -0.062 4.062
14 C 0.284 3.716
15 O -0.419 6.419
16 C -0.141 4.141
17 C -0.033 4.033
18 C -0.061 4.061
19 N -0.108 5.108
20 C -0.184 4.184
21 C -0.188 4.188
22 H 0.049 0.951
23 H 0.029 0.971
24 H 0.111 0.889
25 H 0.073 0.927
26 H 0.062 0.938
27 H 0.100 0.900
28 H 0.073 0.927
29 H 0.118 0.882
30 H 0.124 0.876
31 H 0.131 0.869
32 H 0.121 0.879
33 H 0.121 0.879
34 H 0.131 0.869
Dipole moment (debyes) X Y Z Total
from point charges 4.788 -6.770 12.618 15.099
hybrid contribution 0.265 -1.016 -1.073 1.502
sum 5.053 -7.786 11.545 14.814
Atomic orbital electron populations
1.22080 0.98229 0.99347 1.00781 1.18937 0.90847 0.94545 0.79924
0.91964 1.21304 1.31891 1.13009 0.90277 0.92211 1.24908 0.94963
0.94962 0.99015 1.69881 1.36297 1.22547 1.23783 0.86487 0.79152
0.79278 0.82421 1.20603 1.21113 1.19926 1.48214 1.48776 1.11742
1.23518 1.21625 0.98785 0.83305 1.02470 1.20287 0.79608 0.87274
0.84472 1.90690 1.58080 1.17079 1.76002 1.21322 1.00227 0.97630
0.94962 1.17920 0.97134 0.85735 1.02512 1.27041 0.94054 0.92947
0.92100 1.81107 1.07252 1.12336 1.10069 1.23239 0.90478 1.04085
1.00641 1.23206 1.01764 1.02832 0.90982 0.95144 0.97109 0.88882
0.92660 0.93833 0.90037 0.92682 0.88191 0.87552 0.86944 0.87938
0.87930 0.86916
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16
2 C 0.26 6.61 2.64 -69.09 -0.18 6.43 16
3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16
4 C -0.53 -14.13 7.99 -34.44 -0.28 -14.41 16
5 H 0.06 1.56 7.35 -52.48 -0.39 1.17 16
6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16
7 N -0.89 -25.42 11.32 55.43 0.63 -24.80 16
8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16
9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16
10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16
11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16
12 N -0.59 -12.24 2.75 -175.27 -0.48 -12.73 16
13 C 0.08 1.27 9.23 59.84 0.55 1.82 16
14 C 0.50 9.88 7.49 -10.98 -0.08 9.79 16
15 O -0.54 -13.31 12.88 5.56 0.07 -13.24 16
16 C -0.10 -1.28 4.43 -27.89 -0.12 -1.41 16
17 C -0.03 -0.37 2.26 -157.29 -0.36 -0.72 16
18 C 0.26 4.54 12.05 -20.75 -0.25 4.29 16
19 N -0.43 -9.02 18.35 42.16 0.77 -8.25 16
20 C -0.15 -1.38 9.86 -26.70 -0.26 -1.64 16
21 C -0.15 -1.18 9.93 -26.71 -0.27 -1.45 16
22 H 0.03 0.67 7.66 -51.93 -0.40 0.27 16
23 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16
24 H 0.09 2.49 6.07 -51.92 -0.32 2.18 16
25 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16
26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16
27 H 0.08 1.37 7.04 -51.93 -0.37 1.00 16
28 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16
29 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16
30 H 0.11 1.04 7.16 -51.93 -0.37 0.67 16
31 H 0.11 0.85 8.05 -51.93 -0.42 0.44 16
32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16
33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16
LS Contribution 290.10 15.07 4.37 4.37
Total: -1.00 -34.37 290.10 -5.28 -39.65
By element:
Atomic # 1 Polarization: 2.50 SS G_CDS: -4.62 Total: -2.12 kcal
Atomic # 6 Polarization: 2.17 SS G_CDS: -1.01 Total: 1.16 kcal
Atomic # 7 Polarization: -46.69 SS G_CDS: 0.92 Total: -45.77 kcal
Atomic # 8 Polarization: -13.31 SS G_CDS: 0.07 Total: -13.24 kcal
Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -34.37 -5.28 -39.65 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590216500.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.447 kcal
(2) G-P(sol) polarization free energy of solvation -34.369 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.078 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.796 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds