Wall clock time and date at job start Mon Mar 30 2020 03:44:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09001 * 109.47192 * 2 1
4 4 C 1.50699 * 109.46805 * 240.00299 * 2 1 3
5 5 H 1.08010 * 119.99609 * 239.99550 * 4 2 1
6 6 C 1.37878 * 120.00348 * 60.00091 * 4 2 1
7 7 N 1.31505 * 120.00045 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99729 * 179.97438 * 6 4 2
9 9 H 1.48490 * 109.47219 * 90.00096 * 8 6 4
10 10 H 1.48504 * 109.46673 * 209.99789 * 8 6 4
11 11 H 1.48500 * 109.47269 * 329.99893 * 8 6 4
12 12 N 1.46493 * 109.46836 * 120.00144 * 2 1 3
13 13 C 1.46494 * 120.00444 * 59.72574 * 12 2 1
14 14 C 1.34784 * 119.99864 * 239.99864 * 12 2 1
15 15 O 1.21283 * 119.99649 * 359.72839 * 14 12 2
16 16 C 1.50694 * 119.99988 * 179.72721 * 14 12 2
17 17 C 1.53001 * 109.47168 * 179.97438 * 16 14 12
18 18 C 1.47205 * 115.54870 * 34.33218 * 17 16 14
19 19 N 5.26043 * 110.65381 * 56.55705 * 2 1 3
20 20 C 1.53001 * 117.50092 * 248.62456 * 17 16 14
21 21 C 1.52996 * 117.49969 * 179.97438 * 17 16 14
22 22 H 1.09001 * 109.47192 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.47559 * 299.99953 * 1 2 3
24 24 H 1.09007 * 109.47281 * 60.00212 * 1 2 3
25 25 H 0.96997 * 120.00139 * 179.97438 * 7 6 4
26 26 H 1.08995 * 109.47693 * 270.27497 * 13 12 2
27 27 H 1.09003 * 109.47006 * 30.27410 * 13 12 2
28 28 H 1.09004 * 109.47665 * 150.27102 * 13 12 2
29 29 H 1.08998 * 109.47224 * 299.99701 * 16 14 12
30 30 H 1.09002 * 109.47054 * 60.00213 * 16 14 12
31 31 H 1.08999 * 117.49902 * 359.97438 * 20 17 16
32 32 H 1.08996 * 117.50038 * 145.01886 * 20 17 16
33 33 H 1.09004 * 117.49890 * 214.97776 * 21 17 16
34 34 H 1.08999 * 117.50020 * 359.97438 * 21 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6533 -1.5885 -1.1314
6 6 1.6992 -0.2393 -2.4828
7 7 0.9428 0.8297 -2.6034
8 14 2.3224 -1.1195 -4.0080
9 1 1.3448 -2.1614 -4.4124
10 1 2.4872 -0.1401 -5.1121
11 1 3.6308 -1.7566 -3.7120
12 7 2.0182 -0.6906 1.1961
13 6 1.6594 -2.0914 1.4310
14 6 2.7931 -0.0356 2.0834
15 8 3.0902 1.1241 1.8889
16 6 3.2903 -0.7442 3.3169
17 6 4.1420 0.2169 4.1488
18 6 3.7158 1.6257 4.1251
19 7 3.3855 2.7127 4.1074
20 6 5.6429 -0.0662 4.2386
21 6 4.7425 -0.3174 5.4505
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3634 0.5138 0.8899
24 1 -0.3634 0.5138 -0.8901
25 1 0.7087 1.1613 -3.4844
26 1 0.7311 -2.1382 2.0003
27 1 1.5251 -2.5973 0.4749
28 1 2.4550 -2.5811 1.9926
29 1 2.4401 -1.0824 3.9092
30 1 3.8939 -1.6033 3.0240
31 1 6.0235 -0.9373 3.7055
32 1 6.3150 0.7908 4.2801
33 1 4.8227 0.3744 6.2890
34 1 4.5306 -1.3535 5.7146
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000590216500.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:03
Heat of formation + Delta-G solvation = -2.928991 kcal
Electronic energy + Delta-G solvation = -16740.235534 eV
Core-core repulsion = 14059.510222 eV
Total energy + Delta-G solvation = -2680.725312 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.01792 -38.97159 -37.01664 -36.40800 -34.79811 -31.96201 -29.79312 -27.46681
-27.30911 -24.49271 -23.28014 -22.88615 -20.14867 -18.56240 -18.08183 -17.73193
-16.87641 -16.35882 -15.96636 -15.64267 -14.89948 -14.69926 -14.36793 -14.11390
-13.96826 -13.59828 -13.52135 -13.17318 -13.10083 -12.90634 -12.69358 -12.63341
-12.47468 -12.23499 -12.19615 -12.12038 -11.48143 -11.18465 -10.92802 -10.59589
-10.38473 -9.27571 -8.14837 -6.32174 1.40944 1.43047 1.52933 1.80053
1.88046 2.00736 2.32373 2.50790 2.96810 3.13302 3.20879 3.59621
3.78316 4.01669 4.33279 4.54196 4.68793 4.73512 4.75057 4.83683
4.87337 4.88411 4.93689 5.06759 5.11879 5.15286 5.34049 5.47497
5.59759 5.68185 6.04362 6.16140 6.77617 6.86191 6.89730 7.34073
7.54082 8.89751
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033811 B = 0.006382 C = 0.006226
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 827.938626 B = 4386.128493 C = 4496.449245
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.261 3.739
3 H -0.002 1.002
4 C -0.533 4.533
5 H 0.068 0.932
6 C 0.009 3.991
7 N -0.923 5.923
8 Si 0.969 3.031
9 H -0.266 1.266
10 H -0.290 1.290
11 H -0.266 1.266
12 N -0.602 5.602
13 C 0.076 3.924
14 C 0.480 3.520
15 O -0.603 6.603
16 C -0.081 4.081
17 C -0.076 4.076
18 C 0.272 3.728
19 N -0.514 5.514
20 C -0.142 4.142
21 C -0.104 4.104
22 H 0.051 0.949
23 H 0.012 0.988
24 H 0.063 0.937
25 H 0.263 0.737
26 H 0.063 0.937
27 H 0.065 0.935
28 H 0.106 0.894
29 H 0.133 0.867
30 H 0.151 0.849
31 H 0.140 0.860
32 H 0.090 0.910
33 H 0.105 0.895
34 H 0.157 0.843
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.500 -13.352 14.515 20.766
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.159 3.841
3 H 0.016 0.984
4 C -0.572 4.572
5 H 0.086 0.914
6 C -0.190 4.190
7 N -0.563 5.563
8 Si 0.793 3.207
9 H -0.191 1.191
10 H -0.216 1.216
11 H -0.190 1.190
12 N -0.332 5.332
13 C -0.066 4.066
14 C 0.270 3.730
15 O -0.485 6.485
16 C -0.121 4.121
17 C -0.080 4.080
18 C -0.042 4.042
19 N -0.192 5.192
20 C -0.181 4.181
21 C -0.142 4.142
22 H 0.070 0.930
23 H 0.031 0.969
24 H 0.081 0.919
25 H 0.072 0.928
26 H 0.082 0.918
27 H 0.084 0.916
28 H 0.125 0.875
29 H 0.151 0.849
30 H 0.169 0.831
31 H 0.158 0.842
32 H 0.109 0.891
33 H 0.123 0.877
34 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 6.033 -11.024 14.225 18.981
hybrid contribution -0.098 0.308 -1.521 1.555
sum 5.935 -10.715 12.703 17.647
Atomic orbital electron populations
1.21860 0.97591 1.00111 0.99400 1.18442 0.91304 0.91969 0.82434
0.98401 1.21609 1.31667 1.13028 0.90891 0.91380 1.25840 0.95149
0.95640 1.02413 1.70054 1.37676 1.24206 1.24335 0.85395 0.79043
0.78114 0.78102 1.19083 1.21648 1.19015 1.48226 1.48976 1.13795
1.22195 1.21943 1.01756 0.80113 1.02765 1.21688 0.78400 0.86911
0.86037 1.90676 1.60012 1.20160 1.77650 1.21400 1.01890 0.97647
0.91173 1.18415 0.99498 0.82853 1.07211 1.28258 0.92062 0.94177
0.89737 1.81083 1.10014 1.15100 1.13007 1.23456 0.88121 1.04615
1.01872 1.23453 0.97045 1.04775 0.88923 0.93033 0.96888 0.91853
0.92820 0.91832 0.91597 0.87545 0.84905 0.83112 0.84213 0.89105
0.87659 0.82552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.54 8.97 71.98 0.65 -5.90 16
2 C 0.26 13.84 2.64 44.25 0.12 13.96 16
3 H 0.00 -0.13 6.90 -2.39 -0.02 -0.15 16
4 C -0.53 -28.96 7.99 25.60 0.20 -28.75 16
5 H 0.07 3.49 7.35 -2.91 -0.02 3.47 16
6 C 0.01 0.47 5.30 84.66 0.45 0.92 16
7 N -0.92 -54.95 11.32 21.45 0.24 -54.71 16
8 Si 0.97 43.15 29.54 68.60 2.03 45.17 16
9 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16
10 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16
11 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16
12 N -0.60 -24.37 2.75 -826.82 -2.28 -26.65 16
13 C 0.08 2.07 9.23 127.77 1.18 3.25 16
14 C 0.48 18.71 7.49 87.65 0.66 19.36 16
15 O -0.60 -31.06 12.88 -3.04 -0.04 -31.10 16
16 C -0.08 -1.72 4.43 29.85 0.13 -1.59 16
17 C -0.08 -1.69 2.26 -53.99 -0.12 -1.81 16
18 C 0.27 9.85 12.05 89.44 1.08 10.92 16
19 N -0.51 -22.82 18.35 20.01 0.37 -22.45 16
20 C -0.14 -2.12 9.86 30.61 0.30 -1.82 16
21 C -0.10 -1.09 9.93 30.61 0.30 -0.78 16
22 H 0.05 2.28 7.66 -2.39 -0.02 2.27 16
23 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16
24 H 0.06 3.54 6.07 -2.38 -0.01 3.53 16
25 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16
26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
27 H 0.07 2.02 7.04 -2.39 -0.02 2.00 16
28 H 0.11 1.79 6.44 -2.38 -0.02 1.77 16
29 H 0.13 1.97 8.11 -2.39 -0.02 1.95 16
30 H 0.15 1.87 7.16 -2.39 -0.02 1.86 16
31 H 0.14 1.33 8.05 -2.39 -0.02 1.32 16
32 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16
33 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16
34 H 0.16 0.37 8.14 -2.39 -0.02 0.35 16
Total: -1.00 -84.70 290.10 6.36 -78.34
By element:
Atomic # 1 Polarization: 2.52 SS G_CDS: 1.09 Total: 3.62 kcal
Atomic # 6 Polarization: 2.83 SS G_CDS: 4.94 Total: 7.77 kcal
Atomic # 7 Polarization: -102.14 SS G_CDS: -1.67 Total: -103.81 kcal
Atomic # 8 Polarization: -31.06 SS G_CDS: -0.04 Total: -31.10 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal
Total: -84.70 6.36 -78.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000590216500.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.412 kcal
(2) G-P(sol) polarization free energy of solvation -84.702 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.290 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.361 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.341 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.929 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds