Wall clock time and date at job start Mon Mar 30 2020 03:42:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46721 * 2 1
4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3
5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1
6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3
13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1
14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1
15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2
16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12
17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14
18 18 C 1.36346 * 125.63848 * 269.69324 * 17 16 15
19 19 C 1.34849 * 108.21706 * 179.83041 * 18 17 16
20 20 C 1.40888 * 107.42127 * 0.42171 * 19 18 17
21 21 C 1.34851 * 107.41763 * 359.73839 * 20 19 18
22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3
23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3
24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3
25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
26 26 H 0.97006 * 120.00251 * 0.02562 * 14 12 2
27 27 H 1.09002 * 109.47081 * 299.99975 * 15 14 12
28 28 H 1.09000 * 109.47237 * 60.00287 * 15 14 12
29 29 H 1.09002 * 109.46807 * 299.99867 * 16 15 14
30 30 H 1.08998 * 109.47285 * 60.00265 * 16 15 14
31 31 H 1.07995 * 125.88415 * 359.95797 * 18 17 16
32 32 H 1.08002 * 126.28953 * 180.16359 * 19 18 17
33 33 H 1.07995 * 126.29457 * 179.73385 * 20 19 18
34 34 H 1.07997 * 125.89562 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9427 0.8296 -2.6034
8 14 2.3226 -1.1197 -4.0078
9 1 1.8270 -0.4201 -5.2204
10 1 3.8076 -1.1190 -4.0076
11 1 1.8282 -2.5199 -4.0080
12 6 2.0323 -0.7103 1.2305
13 8 2.7296 -1.6963 1.1193
14 7 1.7067 -0.2498 2.4546
15 6 2.1946 -0.9406 3.6508
16 6 1.6842 -0.2197 4.9000
17 7 2.1715 -0.9108 6.0962
18 6 1.5281 -1.9211 6.7475
19 6 2.2886 -2.2992 7.7950
20 6 3.4393 -1.4862 7.7959
21 6 3.3409 -0.6462 6.7456
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 0.7088 1.1611 -3.4845
26 1 1.1487 0.5387 2.5436
27 1 1.8309 -1.9682 3.6507
28 1 3.2846 -0.9410 3.6510
29 1 2.0476 0.8080 4.9003
30 1 0.5942 -0.2197 4.8997
31 1 0.5748 -2.3466 6.4709
32 1 2.0562 -3.0788 8.5053
33 1 4.2510 -1.5280 8.5071
34 1 4.0638 0.1061 6.4665
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597311382.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:25
Heat of formation + Delta-G solvation = 6.235637 kcal
Electronic energy + Delta-G solvation = -16027.077092 eV
Core-core repulsion = 13346.749189 eV
Total energy + Delta-G solvation = -2680.327904 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.16612 -38.87217 -35.20144 -33.77522 -32.47514 -30.50789 -28.82363 -27.89028
-25.17127 -23.66889 -22.02438 -20.52037 -20.16322 -19.42601 -17.33433 -16.50766
-16.08223 -15.28361 -15.20095 -14.60238 -14.08640 -13.96983 -13.37963 -13.30456
-12.83771 -12.57487 -12.32619 -12.12922 -11.96303 -11.68183 -11.38957 -11.03298
-10.76930 -10.72433 -10.29699 -9.99420 -9.03032 -8.78550 -8.62991 -8.59833
-8.36230 -8.20724 -6.06276 -4.09617 2.21207 2.76405 3.01899 3.34842
3.37193 3.42969 3.65012 3.93990 4.45560 4.52432 4.69969 4.99114
5.07112 5.17637 5.27083 5.46392 5.57983 5.74291 5.79819 6.20042
6.23030 6.26520 6.55901 6.76920 6.85253 6.91890 6.94118 7.17893
7.31191 7.41993 7.71007 7.93439 8.08106 8.36940 8.99131 9.14845
9.56140 11.01326
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.060485 B = 0.004254 C = 0.004126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 462.812788 B = 6580.521281 C = 6784.241222
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.030 3.970
3 H 0.053 0.947
4 C -0.503 4.503
5 H 0.073 0.927
6 C 0.059 3.941
7 N -0.897 5.897
8 Si 0.901 3.099
9 H -0.288 1.288
10 H -0.276 1.276
11 H -0.276 1.276
12 C 0.521 3.479
13 O -0.542 6.542
14 N -0.747 5.747
15 C 0.107 3.893
16 C 0.095 3.905
17 N -0.444 5.444
18 C -0.014 4.014
19 C -0.205 4.205
20 C -0.205 4.205
21 C -0.014 4.014
22 H 0.031 0.969
23 H 0.012 0.988
24 H 0.094 0.906
25 H 0.262 0.738
26 H 0.397 0.603
27 H 0.066 0.934
28 H 0.066 0.934
29 H 0.095 0.905
30 H 0.095 0.905
31 H 0.160 0.840
32 H 0.133 0.867
33 H 0.133 0.867
34 H 0.160 0.840
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.823 0.624 16.557 16.589
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.009 3.991
3 H 0.071 0.929
4 C -0.541 4.541
5 H 0.092 0.908
6 C -0.142 4.142
7 N -0.537 5.537
8 Si 0.729 3.271
9 H -0.213 1.213
10 H -0.202 1.202
11 H -0.202 1.202
12 C 0.310 3.690
13 O -0.417 6.417
14 N -0.403 5.403
15 C -0.019 4.019
16 C -0.027 4.027
17 N -0.120 5.120
18 C -0.143 4.143
19 C -0.230 4.230
20 C -0.230 4.230
21 C -0.143 4.143
22 H 0.050 0.950
23 H 0.031 0.969
24 H 0.112 0.888
25 H 0.071 0.929
26 H 0.231 0.769
27 H 0.085 0.915
28 H 0.085 0.915
29 H 0.113 0.887
30 H 0.113 0.887
31 H 0.177 0.823
32 H 0.151 0.849
33 H 0.151 0.849
34 H 0.177 0.823
Dipole moment (debyes) X Y Z Total
from point charges -0.505 0.178 16.002 16.010
hybrid contribution 0.025 -0.050 -0.719 0.722
sum -0.480 0.128 15.282 15.290
Atomic orbital electron populations
1.21749 0.96472 0.99848 1.00956 1.18878 0.94184 0.96851 0.89159
0.92898 1.21105 1.31141 1.12897 0.89005 0.90839 1.24950 0.95060
0.95056 0.99130 1.69858 1.37016 1.23077 1.23701 0.86493 0.79312
0.79725 0.81546 1.21339 1.20158 1.20171 1.22047 0.78391 0.84287
0.84251 1.90548 1.37749 1.26820 1.86629 1.46189 1.55944 1.32845
1.05335 1.21452 0.99876 0.96813 0.83712 1.22008 1.00861 0.96770
0.83068 1.44017 1.17363 1.28778 1.21847 1.21873 1.00494 0.94914
0.97049 1.20886 0.96874 1.04095 1.01100 1.20886 1.00621 1.00420
1.01027 1.21875 0.90792 1.04687 0.96986 0.94979 0.96947 0.88765
0.92867 0.76941 0.91541 0.91518 0.88686 0.88687 0.82270 0.84892
0.84892 0.82265
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.95 8.87 37.16 0.33 -2.62 16
2 C 0.03 0.74 2.64 -92.93 -0.25 0.50 16
3 H 0.05 1.33 8.14 -51.92 -0.42 0.90 16
4 C -0.50 -14.21 8.37 -34.44 -0.29 -14.49 16
5 H 0.07 2.20 6.75 -52.49 -0.35 1.84 16
6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -24.93 11.32 55.43 0.63 -24.30 16
8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16
9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
12 C 0.52 11.64 7.15 -10.99 -0.08 11.56 16
13 O -0.54 -14.19 15.46 5.56 0.09 -14.10 16
14 N -0.75 -12.15 5.45 -60.30 -0.33 -12.48 16
15 C 0.11 1.51 6.00 -4.04 -0.02 1.48 16
16 C 0.10 0.96 6.20 -4.04 -0.03 0.94 16
17 N -0.44 -5.07 2.75 -117.13 -0.32 -5.39 16
18 C -0.01 -0.15 11.43 -16.75 -0.19 -0.35 16
19 C -0.20 -2.35 10.86 -39.78 -0.43 -2.78 16
20 C -0.20 -2.35 10.86 -39.78 -0.43 -2.78 16
21 C -0.01 -0.16 11.44 -16.74 -0.19 -0.35 16
22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16
23 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16
24 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16
25 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16
26 H 0.40 5.27 7.89 -40.82 -0.32 4.95 16
27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
28 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
29 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16
30 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
31 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16
32 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
33 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16
34 H 0.16 1.46 8.06 -52.49 -0.42 1.03 16
LS Contribution 292.62 15.07 4.41 4.41
Total: -1.00 -32.16 292.62 -6.97 -39.13
By element:
Atomic # 1 Polarization: 8.12 SS G_CDS: -4.75 Total: 3.37 kcal
Atomic # 6 Polarization: -5.70 SS G_CDS: -1.67 Total: -7.37 kcal
Atomic # 7 Polarization: -42.14 SS G_CDS: -0.02 Total: -42.17 kcal
Atomic # 8 Polarization: -14.19 SS G_CDS: 0.09 Total: -14.10 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -32.16 -6.97 -39.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597311382.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.364 kcal
(2) G-P(sol) polarization free energy of solvation -32.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.205 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.969 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.236 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds