Wall clock time and date at job start Mon Mar 30 2020 03:42:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09007 * 109.46721 * 2 1
4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3
5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1
6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1
7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2
8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2
9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4
10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4
11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4
12 12 C 1.50698 * 109.47177 * 119.99481 * 2 1 3
13 13 O 1.21280 * 119.99901 * 120.00184 * 12 2 1
14 14 N 1.34774 * 120.00338 * 300.00305 * 12 2 1
15 15 C 1.46497 * 120.00288 * 179.97438 * 14 12 2
16 16 C 1.53000 * 109.47302 * 180.02562 * 15 14 12
17 17 N 1.46497 * 109.47302 * 179.97438 * 16 15 14
18 18 C 1.36346 * 125.63848 * 269.69324 * 17 16 15
19 19 C 1.34849 * 108.21706 * 179.83041 * 18 17 16
20 20 C 1.40888 * 107.42127 * 0.42171 * 19 18 17
21 21 C 1.34851 * 107.41763 * 359.73839 * 20 19 18
22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3
23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3
24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3
25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4
26 26 H 0.97006 * 120.00251 * 0.02562 * 14 12 2
27 27 H 1.09002 * 109.47081 * 299.99975 * 15 14 12
28 28 H 1.09000 * 109.47237 * 60.00287 * 15 14 12
29 29 H 1.09002 * 109.46807 * 299.99867 * 16 15 14
30 30 H 1.08998 * 109.47285 * 60.00265 * 16 15 14
31 31 H 1.07995 * 125.88415 * 359.95797 * 18 17 16
32 32 H 1.08002 * 126.28953 * 180.16359 * 19 18 17
33 33 H 1.07995 * 126.29457 * 179.73385 * 20 19 18
34 34 H 1.07997 * 125.89562 * 180.02562 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9427 0.8296 -2.6034
8 14 2.3226 -1.1197 -4.0078
9 1 1.8270 -0.4201 -5.2204
10 1 3.8076 -1.1190 -4.0076
11 1 1.8282 -2.5199 -4.0080
12 6 2.0323 -0.7103 1.2305
13 8 2.7296 -1.6963 1.1193
14 7 1.7067 -0.2498 2.4546
15 6 2.1946 -0.9406 3.6508
16 6 1.6842 -0.2197 4.9000
17 7 2.1715 -0.9108 6.0962
18 6 1.5281 -1.9211 6.7475
19 6 2.2886 -2.2992 7.7950
20 6 3.4393 -1.4862 7.7959
21 6 3.3409 -0.6462 6.7456
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5139 0.8899
24 1 -0.3633 0.5138 -0.8900
25 1 0.7088 1.1611 -3.4845
26 1 1.1487 0.5387 2.5436
27 1 1.8309 -1.9682 3.6507
28 1 3.2846 -0.9410 3.6510
29 1 2.0476 0.8080 4.9003
30 1 0.5942 -0.2197 4.8997
31 1 0.5748 -2.3466 6.4709
32 1 2.0562 -3.0788 8.5053
33 1 4.2510 -1.5280 8.5071
34 1 4.0638 0.1061 6.4665
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597311382.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:24
Heat of formation + Delta-G solvation = -14.219548 kcal
Electronic energy + Delta-G solvation = -16027.964096 eV
Core-core repulsion = 13346.749189 eV
Total energy + Delta-G solvation = -2681.214907 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.00433 -40.57404 -36.53050 -35.77776 -33.71583 -32.35795 -29.64381 -29.04285
-27.19397 -25.01206 -23.56065 -21.40005 -21.35407 -20.68685 -18.40718 -18.33438
-17.74904 -16.78145 -16.52772 -16.38786 -15.41131 -15.19635 -14.61195 -14.58280
-14.25293 -14.08414 -13.49478 -13.21949 -13.02505 -12.96713 -12.88796 -12.71761
-12.59340 -12.47613 -12.18999 -12.01781 -11.05870 -10.64923 -10.37318 -10.09455
-9.54996 -9.04995 -8.16256 -6.26472 1.33972 1.41145 1.42046 1.50743
1.84038 1.87871 2.16852 2.41017 2.67495 3.13572 3.70908 3.72536
4.21631 4.23580 4.35893 4.40730 4.46658 4.74601 4.76616 4.80720
4.83647 4.94797 5.02985 5.41193 5.43951 5.46171 5.49773 5.74406
5.93655 6.10591 6.21118 6.34020 6.49440 6.69829 6.83720 7.38212
7.50030 8.89165
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.060485 B = 0.004254 C = 0.004126
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 462.812788 B = 6580.521281 C = 6784.241222
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C 0.024 3.976
3 H 0.046 0.954
4 C -0.533 4.533
5 H 0.046 0.954
6 C 0.022 3.978
7 N -0.909 5.909
8 Si 0.953 3.047
9 H -0.274 1.274
10 H -0.277 1.277
11 H -0.277 1.277
12 C 0.522 3.478
13 O -0.589 6.589
14 N -0.721 5.721
15 C 0.112 3.888
16 C 0.107 3.893
17 N -0.450 5.450
18 C -0.025 4.025
19 C -0.222 4.222
20 C -0.222 4.222
21 C -0.026 4.026
22 H 0.021 0.979
23 H 0.057 0.943
24 H 0.070 0.930
25 H 0.265 0.735
26 H 0.416 0.584
27 H 0.051 0.949
28 H 0.051 0.949
29 H 0.118 0.882
30 H 0.119 0.881
31 H 0.178 0.822
32 H 0.145 0.855
33 H 0.145 0.855
34 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.545 1.402 17.441 17.565
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.003 3.997
3 H 0.064 0.936
4 C -0.572 4.572
5 H 0.064 0.936
6 C -0.178 4.178
7 N -0.548 5.548
8 Si 0.779 3.221
9 H -0.198 1.198
10 H -0.203 1.203
11 H -0.203 1.203
12 C 0.311 3.689
13 O -0.468 6.468
14 N -0.376 5.376
15 C -0.013 4.013
16 C -0.016 4.016
17 N -0.127 5.127
18 C -0.155 4.155
19 C -0.247 4.247
20 C -0.246 4.246
21 C -0.155 4.155
22 H 0.040 0.960
23 H 0.076 0.924
24 H 0.089 0.911
25 H 0.075 0.925
26 H 0.253 0.747
27 H 0.069 0.931
28 H 0.069 0.931
29 H 0.137 0.863
30 H 0.137 0.863
31 H 0.195 0.805
32 H 0.163 0.837
33 H 0.163 0.837
34 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -1.259 1.001 16.930 17.006
hybrid contribution 0.265 -0.289 -0.926 1.005
sum -0.994 0.712 16.004 16.051
Atomic orbital electron populations
1.21567 0.94760 0.99449 1.02015 1.18822 0.95539 0.96051 0.89262
0.93617 1.21273 1.31767 1.12816 0.91296 0.93550 1.25559 0.95162
0.95732 1.01312 1.69928 1.37039 1.23465 1.24411 0.85687 0.78667
0.78754 0.78990 1.19832 1.20257 1.20270 1.21616 0.78068 0.83609
0.85597 1.90528 1.39949 1.28824 1.87516 1.45761 1.54719 1.32811
1.04287 1.21490 0.98980 0.96490 0.84390 1.21984 1.02141 0.96918
0.80508 1.44132 1.17508 1.29014 1.22002 1.22281 1.01254 0.94876
0.97046 1.21212 0.97126 1.04608 1.01719 1.21211 1.01156 1.00645
1.01638 1.22282 0.91126 1.05088 0.96993 0.95975 0.92392 0.91109
0.92537 0.74714 0.93092 0.93090 0.86350 0.86320 0.80489 0.83735
0.83738 0.80506
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.21 8.87 71.98 0.64 -4.57 16
2 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16
3 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16
4 C -0.53 -30.64 8.37 25.60 0.21 -30.42 16
5 H 0.05 2.87 6.75 -2.91 -0.02 2.85 16
6 C 0.02 1.21 5.30 84.66 0.45 1.65 16
7 N -0.91 -50.22 11.32 21.45 0.24 -49.98 16
8 Si 0.95 44.64 29.54 68.60 2.03 46.66 16
9 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
11 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
12 C 0.52 23.19 7.15 87.66 0.63 23.82 16
13 O -0.59 -31.40 15.46 -3.03 -0.05 -31.45 16
14 N -0.72 -22.03 5.45 -463.07 -2.52 -24.55 16
15 C 0.11 2.96 6.00 86.38 0.52 3.48 16
16 C 0.11 1.81 6.20 86.38 0.54 2.35 16
17 N -0.45 -9.24 2.75 -524.48 -1.44 -10.69 16
18 C -0.03 -0.52 11.43 83.21 0.95 0.43 16
19 C -0.22 -4.80 10.86 22.14 0.24 -4.56 16
20 C -0.22 -4.80 10.86 22.14 0.24 -4.56 16
21 C -0.03 -0.53 11.44 83.21 0.95 0.42 16
22 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16
23 H 0.06 1.93 7.56 -2.39 -0.02 1.91 16
24 H 0.07 3.44 6.07 -2.39 -0.01 3.43 16
25 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16
26 H 0.42 9.64 7.89 -92.70 -0.73 8.91 16
27 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16
28 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16
29 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16
30 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16
31 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16
32 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16
33 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16
34 H 0.18 2.86 8.06 -2.91 -0.02 2.83 16
Total: -1.00 -70.25 292.62 3.95 -66.30
By element:
Atomic # 1 Polarization: 14.15 SS G_CDS: 0.36 Total: 14.51 kcal
Atomic # 6 Polarization: -16.14 SS G_CDS: 5.33 Total: -10.81 kcal
Atomic # 7 Polarization: -81.50 SS G_CDS: -3.72 Total: -85.22 kcal
Atomic # 8 Polarization: -31.40 SS G_CDS: -0.05 Total: -31.45 kcal
Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal
Total: -70.25 3.95 -66.30 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597311382.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.082 kcal
(2) G-P(sol) polarization free energy of solvation -70.249 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.167 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.948 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.301 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.220 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds