Wall clock time and date at job start Mon Mar 30 2020 03:42:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.47173 * 2 1
4 4 C 1.50704 * 109.46785 * 240.00635 * 2 1 3
5 5 H 1.07998 * 119.99953 * 243.90794 * 4 2 1
6 6 C 1.37876 * 120.00290 * 63.91164 * 4 2 1
7 7 N 1.31510 * 120.00096 * 197.52322 * 6 4 2
8 8 Si 1.86804 * 119.99987 * 17.52159 * 6 4 2
9 9 H 1.48500 * 109.46891 * 94.39035 * 8 6 4
10 10 H 1.48494 * 109.47355 * 214.39527 * 8 6 4
11 11 H 1.48503 * 109.46871 * 334.39374 * 8 6 4
12 12 C 1.50698 * 109.47358 * 120.00702 * 2 1 3
13 13 O 1.21279 * 120.00112 * 94.55083 * 12 2 1
14 14 N 1.34778 * 119.99699 * 274.55559 * 12 2 1
15 15 C 1.46498 * 120.00211 * 354.41105 * 14 12 2
16 16 C 1.46499 * 120.00031 * 174.42191 * 14 12 2
17 17 C 1.50699 * 109.47504 * 89.99082 * 16 14 12
18 18 C 1.34847 * 125.89454 * 265.04733 * 17 16 14
19 19 C 1.40888 * 107.41891 * 179.73445 * 18 17 16
20 20 C 1.34851 * 107.41693 * 0.37551 * 19 18 17
21 21 N 1.36343 * 108.21938 * 359.62375 * 20 19 18
22 22 H 0.96998 * 125.64516 * 180.22032 * 21 20 19
23 23 H 1.08994 * 109.46734 * 299.93815 * 1 2 3
24 24 H 1.09004 * 109.46889 * 59.93112 * 1 2 3
25 25 H 1.09001 * 109.47226 * 179.97438 * 1 2 3
26 26 H 0.97006 * 119.99995 * 180.02562 * 7 6 4
27 27 H 1.08997 * 109.47383 * 268.73376 * 15 14 12
28 28 H 1.09008 * 109.46802 * 28.73091 * 15 14 12
29 29 H 1.09001 * 109.47223 * 148.72711 * 15 14 12
30 30 H 1.09006 * 109.46479 * 329.99539 * 16 14 12
31 31 H 1.08992 * 109.47196 * 210.00018 * 16 14 12
32 32 H 1.07997 * 126.28942 * 359.97438 * 18 17 16
33 33 H 1.08004 * 126.29252 * 180.23984 * 19 18 17
34 34 H 1.08002 * 125.89404 * 179.88736 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2306
5 1 2.6001 -1.6238 -1.1329
6 6 1.7670 -0.1940 -2.4812
7 7 1.8887 -0.9556 -3.5464
8 14 1.2346 1.5874 -2.6626
9 1 2.4231 2.4333 -2.9406
10 1 0.2703 1.7040 -3.7857
11 1 0.5874 2.0410 -1.4053
12 6 2.0324 -0.7105 1.2303
13 8 2.3131 -1.8892 1.1778
14 7 2.1696 -0.0361 2.3891
15 6 1.9485 1.4117 2.4247
16 6 2.5402 -0.7507 3.6131
17 6 4.0412 -0.7788 3.7437
18 6 4.8516 -1.7771 3.3374
19 6 6.1738 -1.3974 3.6416
20 6 6.1203 -0.1851 4.2298
21 7 4.8143 0.2012 4.2922
22 1 4.4887 1.0352 4.6655
23 1 -0.3632 0.5129 0.8905
24 1 -0.3633 0.5149 -0.8894
25 1 -0.3634 -1.0277 -0.0005
26 1 1.7025 -0.5922 -4.4263
27 1 2.8919 1.9278 2.2468
28 1 1.2314 1.6887 1.6519
29 1 1.5576 1.6956 3.4018
30 1 2.1603 -1.7714 3.5669
31 1 2.1099 -0.2417 4.4755
32 1 4.5440 -2.6969 2.8623
33 1 7.0660 -1.9725 3.4425
34 1 6.9665 0.3839 4.5858
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597338991.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:16
Heat of formation + Delta-G solvation = 17.549078 kcal
Electronic energy + Delta-G solvation = -16909.742969 eV
Core-core repulsion = 14229.905653 eV
Total energy + Delta-G solvation = -2679.837316 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.89605 -39.00098 -34.97730 -33.79868 -31.39965 -30.69912 -29.91585 -26.55176
-25.35583 -25.10418 -22.10317 -20.43512 -19.88296 -18.54039 -17.35555 -16.87952
-15.84110 -15.57045 -14.61931 -14.38326 -13.63761 -13.52226 -13.24832 -13.01643
-12.96134 -12.39758 -12.30994 -12.22973 -11.97870 -11.83724 -11.49010 -11.26691
-10.95262 -10.52445 -10.32647 -9.66484 -9.23249 -8.71282 -8.59745 -8.37627
-8.28666 -7.78379 -6.07306 -4.00600 2.37243 3.21112 3.24801 3.32802
3.35978 3.45315 3.64984 3.79182 4.41080 5.03250 5.19038 5.21946
5.30186 5.31787 5.64314 5.69098 5.77156 5.88488 5.91139 6.04983
6.24913 6.44055 6.46991 6.57328 6.65348 6.79825 7.01755 7.23495
7.25701 7.37545 7.61030 7.76496 8.00861 8.54711 9.10895 9.15503
9.55985 11.05824
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031804 B = 0.007087 C = 0.006774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.183524 B = 3949.782657 C = 4132.356363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.003 3.997
3 H 0.040 0.960
4 C -0.510 4.510
5 H 0.087 0.913
6 C 0.077 3.923
7 N -0.886 5.886
8 Si 0.860 3.140
9 H -0.280 1.280
10 H -0.286 1.286
11 H -0.256 1.256
12 C 0.532 3.468
13 O -0.523 6.523
14 N -0.631 5.631
15 C 0.081 3.919
16 C 0.186 3.814
17 C -0.002 4.002
18 C -0.168 4.168
19 C -0.203 4.203
20 C -0.021 4.021
21 N -0.557 5.557
22 H 0.407 0.593
23 H 0.026 0.974
24 H 0.055 0.945
25 H 0.055 0.945
26 H 0.264 0.736
27 H 0.046 0.954
28 H 0.080 0.920
29 H 0.059 0.941
30 H 0.101 0.899
31 H 0.072 0.928
32 H 0.137 0.863
33 H 0.132 0.868
34 H 0.159 0.841
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.914 6.904 16.489 17.978
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.019 4.019
3 H 0.057 0.943
4 C -0.548 4.548
5 H 0.105 0.895
6 C -0.126 4.126
7 N -0.523 5.523
8 Si 0.687 3.313
9 H -0.206 1.206
10 H -0.212 1.212
11 H -0.181 1.181
12 C 0.323 3.677
13 O -0.397 6.397
14 N -0.367 5.367
15 C -0.063 4.063
16 C 0.062 3.938
17 C -0.115 4.115
18 C -0.194 4.194
19 C -0.228 4.228
20 C -0.152 4.152
21 N -0.152 5.152
22 H 0.243 0.757
23 H 0.045 0.955
24 H 0.074 0.926
25 H 0.074 0.926
26 H 0.074 0.926
27 H 0.064 0.936
28 H 0.099 0.901
29 H 0.078 0.922
30 H 0.119 0.881
31 H 0.091 0.909
32 H 0.155 0.845
33 H 0.149 0.851
34 H 0.176 0.824
Dipole moment (debyes) X Y Z Total
from point charges 1.969 6.351 16.277 17.583
hybrid contribution -0.170 1.550 -0.143 1.566
sum 1.799 7.901 16.134 18.055
Atomic orbital electron populations
1.22066 0.96613 1.01356 0.99294 1.19223 0.93735 0.96680 0.92243
0.94252 1.20830 1.35567 1.10941 0.87432 0.89468 1.24911 0.94719
0.97178 0.95752 1.69998 1.48618 1.35017 0.98661 0.87222 0.78751
0.87044 0.78295 1.20644 1.21168 1.18073 1.21378 0.75408 0.87420
0.83515 1.90569 1.48374 1.16795 1.83941 1.48209 1.71508 1.08076
1.08931 1.21755 1.01208 0.81019 1.02277 1.19723 0.87293 0.99699
0.87065 1.20851 0.94246 0.90943 1.05476 1.20852 0.92458 1.00506
1.05543 1.20928 0.97597 0.97328 1.06961 1.21725 0.85957 0.98687
1.08822 1.41906 1.06592 1.17537 1.49213 0.75734 0.95456 0.92622
0.92615 0.92642 0.93587 0.90110 0.92215 0.88116 0.90921 0.84511
0.85052 0.82378
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.89 8.36 37.16 0.31 -2.58 16
2 C 0.00 0.07 1.34 -92.92 -0.12 -0.06 16
3 H 0.04 0.89 5.20 -51.93 -0.27 0.62 16
4 C -0.51 -14.90 8.78 -34.44 -0.30 -15.21 16
5 H 0.09 2.91 7.24 -52.49 -0.38 2.53 16
6 C 0.08 2.23 5.33 -17.82 -0.09 2.13 16
7 N -0.89 -27.42 13.96 55.43 0.77 -26.65 16
8 Si 0.86 20.66 25.84 -169.99 -4.39 16.27 16
9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.26 -5.56 5.52 56.52 0.31 -5.25 16
12 C 0.53 11.97 6.76 -10.99 -0.07 11.89 16
13 O -0.52 -13.60 15.44 5.56 0.09 -13.51 16
14 N -0.63 -10.78 2.86 -182.96 -0.52 -11.30 16
15 C 0.08 1.08 10.06 59.85 0.60 1.68 16
16 C 0.19 2.71 5.94 -5.19 -0.03 2.68 16
17 C 0.00 -0.03 6.75 -81.79 -0.55 -0.59 16
18 C -0.17 -2.89 10.76 -39.78 -0.43 -3.32 16
19 C -0.20 -3.03 10.86 -39.78 -0.43 -3.47 16
20 C -0.02 -0.26 11.94 -16.75 -0.20 -0.46 16
21 N -0.56 -6.83 6.08 -9.12 -0.06 -6.89 16
22 H 0.41 3.63 8.96 -40.82 -0.37 3.27 16
23 H 0.03 0.47 7.35 -51.93 -0.38 0.09 16
24 H 0.05 1.20 5.02 -51.93 -0.26 0.94 16
25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16
26 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
28 H 0.08 1.14 5.37 -51.92 -0.28 0.86 16
29 H 0.06 0.58 7.91 -51.93 -0.41 0.16 16
30 H 0.10 1.60 7.51 -51.93 -0.39 1.21 16
31 H 0.07 0.78 7.90 -51.93 -0.41 0.37 16
32 H 0.14 2.54 8.06 -52.49 -0.42 2.12 16
33 H 0.13 1.74 8.06 -52.48 -0.42 1.32 16
34 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16
LS Contribution 282.01 15.07 4.25 4.25
Total: -1.00 -34.74 282.01 -5.67 -40.41
By element:
Atomic # 1 Polarization: 9.19 SS G_CDS: -4.49 Total: 4.70 kcal
Atomic # 6 Polarization: -5.96 SS G_CDS: -1.33 Total: -7.28 kcal
Atomic # 7 Polarization: -45.03 SS G_CDS: 0.20 Total: -44.84 kcal
Atomic # 8 Polarization: -13.60 SS G_CDS: 0.09 Total: -13.51 kcal
Atomic # 14 Polarization: 20.66 SS G_CDS: -4.39 Total: 16.27 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -34.74 -5.67 -40.41 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597338991.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.962 kcal
(2) G-P(sol) polarization free energy of solvation -34.739 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.223 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.413 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds