Wall clock time and date at job start Mon Mar 30 2020 03:42:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08997 * 109.47173 * 2 1
4 4 C 1.50704 * 109.46785 * 240.00635 * 2 1 3
5 5 H 1.07998 * 119.99953 * 243.90794 * 4 2 1
6 6 C 1.37876 * 120.00290 * 63.91164 * 4 2 1
7 7 N 1.31510 * 120.00096 * 197.52322 * 6 4 2
8 8 Si 1.86804 * 119.99987 * 17.52159 * 6 4 2
9 9 H 1.48500 * 109.46891 * 94.39035 * 8 6 4
10 10 H 1.48494 * 109.47355 * 214.39527 * 8 6 4
11 11 H 1.48503 * 109.46871 * 334.39374 * 8 6 4
12 12 C 1.50698 * 109.47358 * 120.00702 * 2 1 3
13 13 O 1.21279 * 120.00112 * 94.55083 * 12 2 1
14 14 N 1.34778 * 119.99699 * 274.55559 * 12 2 1
15 15 C 1.46498 * 120.00211 * 354.41105 * 14 12 2
16 16 C 1.46499 * 120.00031 * 174.42191 * 14 12 2
17 17 C 1.50699 * 109.47504 * 89.99082 * 16 14 12
18 18 C 1.34847 * 125.89454 * 265.04733 * 17 16 14
19 19 C 1.40888 * 107.41891 * 179.73445 * 18 17 16
20 20 C 1.34851 * 107.41693 * 0.37551 * 19 18 17
21 21 N 1.36343 * 108.21938 * 359.62375 * 20 19 18
22 22 H 0.96998 * 125.64516 * 180.22032 * 21 20 19
23 23 H 1.08994 * 109.46734 * 299.93815 * 1 2 3
24 24 H 1.09004 * 109.46889 * 59.93112 * 1 2 3
25 25 H 1.09001 * 109.47226 * 179.97438 * 1 2 3
26 26 H 0.97006 * 119.99995 * 180.02562 * 7 6 4
27 27 H 1.08997 * 109.47383 * 268.73376 * 15 14 12
28 28 H 1.09008 * 109.46802 * 28.73091 * 15 14 12
29 29 H 1.09001 * 109.47223 * 148.72711 * 15 14 12
30 30 H 1.09006 * 109.46479 * 329.99539 * 16 14 12
31 31 H 1.08992 * 109.47196 * 210.00018 * 16 14 12
32 32 H 1.07997 * 126.28942 * 359.97438 * 18 17 16
33 33 H 1.08004 * 126.29252 * 180.23984 * 19 18 17
34 34 H 1.08002 * 125.89404 * 179.88736 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7103 -1.2306
5 1 2.6001 -1.6238 -1.1329
6 6 1.7670 -0.1940 -2.4812
7 7 1.8887 -0.9556 -3.5464
8 14 1.2346 1.5874 -2.6626
9 1 2.4231 2.4333 -2.9406
10 1 0.2703 1.7040 -3.7857
11 1 0.5874 2.0410 -1.4053
12 6 2.0324 -0.7105 1.2303
13 8 2.3131 -1.8892 1.1778
14 7 2.1696 -0.0361 2.3891
15 6 1.9485 1.4117 2.4247
16 6 2.5402 -0.7507 3.6131
17 6 4.0412 -0.7788 3.7437
18 6 4.8516 -1.7771 3.3374
19 6 6.1738 -1.3974 3.6416
20 6 6.1203 -0.1851 4.2298
21 7 4.8143 0.2012 4.2922
22 1 4.4887 1.0352 4.6655
23 1 -0.3632 0.5129 0.8905
24 1 -0.3633 0.5149 -0.8894
25 1 -0.3634 -1.0277 -0.0005
26 1 1.7025 -0.5922 -4.4263
27 1 2.8919 1.9278 2.2468
28 1 1.2314 1.6887 1.6519
29 1 1.5576 1.6956 3.4018
30 1 2.1603 -1.7714 3.5669
31 1 2.1099 -0.2417 4.4755
32 1 4.5440 -2.6969 2.8623
33 1 7.0660 -1.9725 3.4425
34 1 6.9665 0.3839 4.5858
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597338991.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:16
Heat of formation + Delta-G solvation = -8.353219 kcal
Electronic energy + Delta-G solvation = -16910.866177 eV
Core-core repulsion = 14229.905653 eV
Total energy + Delta-G solvation = -2680.960524 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.02692 -40.61130 -36.47605 -35.78185 -33.38724 -31.81952 -31.19075 -27.68674
-27.17889 -26.71061 -23.81171 -21.53364 -21.06803 -20.11989 -18.92639 -18.46484
-17.53454 -17.18794 -16.14426 -15.98655 -15.09671 -14.84822 -14.63597 -14.49500
-14.23254 -14.11462 -13.83322 -13.45857 -13.27748 -13.15091 -13.06803 -12.78904
-12.48709 -12.39309 -12.19065 -11.48306 -11.34019 -10.58678 -10.44199 -9.73722
-9.66656 -8.94916 -8.29796 -6.31212 1.22827 1.36401 1.40882 1.51444
1.88692 2.02028 2.37203 2.46317 2.51265 3.03342 3.86706 4.06795
4.27331 4.37491 4.45232 4.45352 4.56142 4.67003 4.68499 4.77654
4.81696 4.86092 4.94337 5.07910 5.34424 5.44069 5.49914 5.58564
5.70650 6.04382 6.18500 6.24644 6.54949 6.79639 6.87019 7.27410
7.48926 8.88662
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031804 B = 0.007087 C = 0.006774
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 880.183524 B = 3949.782657 C = 4132.356363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C 0.002 3.998
3 H 0.065 0.935
4 C -0.530 4.530
5 H 0.017 0.983
6 C 0.013 3.987
7 N -0.945 5.945
8 Si 0.940 3.060
9 H -0.275 1.275
10 H -0.283 1.283
11 H -0.208 1.208
12 C 0.524 3.476
13 O -0.580 6.580
14 N -0.619 5.619
15 C 0.068 3.932
16 C 0.185 3.815
17 C -0.007 4.007
18 C -0.214 4.214
19 C -0.237 4.237
20 C 0.005 3.995
21 N -0.538 5.538
22 H 0.429 0.571
23 H 0.076 0.924
24 H 0.056 0.944
25 H 0.032 0.968
26 H 0.267 0.733
27 H 0.054 0.946
28 H 0.078 0.922
29 H 0.110 0.890
30 H 0.076 0.924
31 H 0.127 0.873
32 H 0.100 0.900
33 H 0.137 0.863
34 H 0.204 0.796
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.087 11.707 19.236 22.545
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.020 4.020
3 H 0.083 0.917
4 C -0.568 4.568
5 H 0.035 0.965
6 C -0.184 4.184
7 N -0.584 5.584
8 Si 0.761 3.239
9 H -0.200 1.200
10 H -0.209 1.209
11 H -0.130 1.130
12 C 0.315 3.685
13 O -0.458 6.458
14 N -0.353 5.353
15 C -0.073 4.073
16 C 0.062 3.938
17 C -0.121 4.121
18 C -0.240 4.240
19 C -0.262 4.262
20 C -0.127 4.127
21 N -0.135 5.135
22 H 0.269 0.731
23 H 0.095 0.905
24 H 0.075 0.925
25 H 0.051 0.949
26 H 0.076 0.924
27 H 0.073 0.927
28 H 0.097 0.903
29 H 0.128 0.872
30 H 0.094 0.906
31 H 0.145 0.855
32 H 0.118 0.882
33 H 0.155 0.845
34 H 0.221 0.779
Dipole moment (debyes) X Y Z Total
from point charges 1.130 11.218 19.103 22.182
hybrid contribution 0.186 -0.055 -0.950 0.970
sum 1.316 11.163 18.153 21.351
Atomic orbital electron populations
1.21957 0.94393 1.00790 1.01656 1.19172 0.95393 0.96965 0.90442
0.91741 1.20984 1.35563 1.09438 0.90787 0.96484 1.26018 0.94616
1.03153 0.94658 1.70179 1.50607 1.38019 0.99585 0.85964 0.78752
0.78801 0.80342 1.20045 1.20897 1.13012 1.21254 0.75444 0.86831
0.85018 1.90558 1.50947 1.19226 1.85046 1.48112 1.69507 1.09853
1.07801 1.22135 1.02022 0.77876 1.05288 1.19904 0.87167 0.99211
0.87509 1.20743 0.94545 0.91216 1.05598 1.20878 0.94772 1.00685
1.07646 1.21157 0.96856 0.99252 1.08928 1.22310 0.86996 0.97444
1.05959 1.41836 1.06137 1.17549 1.47966 0.73137 0.90519 0.92538
0.94899 0.92377 0.92702 0.90327 0.87159 0.90568 0.85499 0.88193
0.84546 0.77942
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.25 8.36 71.98 0.60 -4.65 16
2 C 0.00 0.09 1.34 -12.28 -0.02 0.08 16
3 H 0.06 2.69 5.20 -2.39 -0.01 2.68 16
4 C -0.53 -32.46 8.78 25.60 0.22 -32.23 16
5 H 0.02 1.24 7.24 -2.91 -0.02 1.21 16
6 C 0.01 0.77 5.33 84.66 0.45 1.22 16
7 N -0.94 -61.29 13.96 21.45 0.30 -60.99 16
8 Si 0.94 41.79 25.84 68.60 1.77 43.56 16
9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16
11 H -0.21 -7.61 5.52 99.48 0.55 -7.06 16
12 C 0.52 23.81 6.76 87.66 0.59 24.40 16
13 O -0.58 -32.30 15.44 -3.03 -0.05 -32.34 16
14 N -0.62 -19.64 2.86 -851.14 -2.43 -22.07 16
15 C 0.07 1.44 10.06 127.77 1.29 2.72 16
16 C 0.19 5.03 5.94 85.63 0.51 5.54 16
17 C -0.01 -0.20 6.75 41.08 0.28 0.08 16
18 C -0.21 -7.75 10.76 22.14 0.24 -7.51 16
19 C -0.24 -7.09 10.86 22.14 0.24 -6.85 16
20 C 0.01 0.11 11.94 83.21 0.99 1.11 16
21 N -0.54 -11.18 6.08 -182.76 -1.11 -12.29 16
22 H 0.43 5.25 8.96 -92.71 -0.83 4.42 16
23 H 0.08 2.33 7.35 -2.39 -0.02 2.31 16
24 H 0.06 2.24 5.02 -2.38 -0.01 2.23 16
25 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16
26 H 0.27 15.97 8.31 -92.70 -0.77 15.20 16
27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16
28 H 0.08 1.73 5.37 -2.38 -0.01 1.72 16
29 H 0.11 1.28 7.91 -2.39 -0.02 1.26 16
30 H 0.08 2.47 7.51 -2.38 -0.02 2.45 16
31 H 0.13 2.08 7.90 -2.39 -0.02 2.06 16
32 H 0.10 4.23 8.06 -2.91 -0.02 4.20 16
33 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16
34 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16
Total: -1.00 -85.78 282.01 4.00 -81.78
By element:
Atomic # 1 Polarization: 18.34 SS G_CDS: 0.12 Total: 18.46 kcal
Atomic # 6 Polarization: -21.50 SS G_CDS: 5.40 Total: -16.10 kcal
Atomic # 7 Polarization: -92.11 SS G_CDS: -3.24 Total: -95.35 kcal
Atomic # 8 Polarization: -32.30 SS G_CDS: -0.05 Total: -32.34 kcal
Atomic # 14 Polarization: 41.79 SS G_CDS: 1.77 Total: 43.56 kcal
Total: -85.78 4.00 -81.78 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597338991.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.423 kcal
(2) G-P(sol) polarization free energy of solvation -85.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.354 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.001 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds