Wall clock time and date at job start Mon Mar 30 2020 03:42:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09007 * 109.47427 * 2 1
4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3
5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1
6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1
7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2
8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2
9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4
10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4
12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3
13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1
14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1
15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2
16 16 C 1.50700 * 109.47257 * 180.02562 * 15 14 12
17 17 C 1.40890 * 126.29025 * 90.02446 * 16 15 14
18 18 C 1.34853 * 107.41425 * 179.97438 * 17 16 15
19 19 N 1.36336 * 108.22161 * 359.97438 * 18 17 16
20 20 C 1.46492 * 125.63927 * 180.02562 * 19 18 17
21 21 C 1.34845 * 126.29047 * 269.71219 * 16 15 14
22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3
23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3
25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4
26 26 H 0.97002 * 120.00040 * 0.02562 * 14 12 2
27 27 H 1.09009 * 109.46700 * 300.00334 * 15 14 12
28 28 H 1.08998 * 109.47265 * 60.00066 * 15 14 12
29 29 H 1.08001 * 126.29397 * 359.94221 * 17 16 15
30 30 H 1.07999 * 125.88468 * 180.02562 * 18 17 16
31 31 H 1.09003 * 109.47151 * 90.02475 * 20 19 18
32 32 H 1.09001 * 109.47383 * 210.02484 * 20 19 18
33 33 H 1.08999 * 109.47261 * 330.02421 * 20 19 18
34 34 H 1.08004 * 125.89003 * 0.02562 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6532 -1.5886 1.1312
6 6 1.6946 -0.2428 2.4826
7 7 0.9386 0.8265 2.6034
8 14 2.3109 -1.1280 4.0077
9 1 3.7959 -1.1287 4.0136
10 1 1.8119 -0.4309 5.2203
11 1 1.8152 -2.5279 4.0019
12 6 2.0323 -0.7103 -1.2306
13 8 2.7295 -1.6965 -1.1194
14 7 1.7067 -0.2498 -2.4546
15 6 2.1945 -0.9406 -3.6509
16 6 1.6928 -0.2297 -4.8813
17 6 2.3431 0.8184 -5.5623
18 6 1.5620 1.1684 -6.6043
19 7 0.4536 0.3746 -6.5919
20 6 -0.6474 0.4308 -7.5566
21 6 0.5417 -0.4836 -5.5361
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 0.7006 1.1552 3.4844
26 1 1.1493 0.5391 -2.5435
27 1 3.2846 -0.9410 -3.6510
28 1 1.8308 -1.9681 -3.6508
29 1 3.2923 1.2605 -5.2980
30 1 1.7777 1.9434 -7.3249
31 1 -0.4362 -0.2412 -8.3885
32 1 -1.5734 0.1258 -7.0693
33 1 -0.7517 1.4496 -7.9299
34 1 -0.1860 -1.2358 -5.2691
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597340171.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:14
Heat of formation + Delta-G solvation = 6.674756 kcal
Electronic energy + Delta-G solvation = -16127.027269 eV
Core-core repulsion = 13446.718407 eV
Total energy + Delta-G solvation = -2680.308862 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-41.19110 -38.51185 -34.53580 -33.60332 -32.46881 -30.46578 -29.05192 -27.27444
-25.04656 -24.66510 -22.09229 -20.35740 -19.63250 -19.08754 -17.18809 -16.13508
-15.64850 -15.41050 -14.78335 -14.37186 -14.26754 -14.01485 -13.17869 -12.88445
-12.85270 -12.70234 -12.38910 -12.26246 -11.64474 -11.56471 -11.22869 -10.91549
-10.64667 -10.59220 -10.13870 -9.87212 -8.88247 -8.76134 -8.41015 -8.26911
-8.19238 -8.01666 -5.94021 -3.96636 2.19786 2.86252 2.91081 3.42564
3.44247 3.50577 3.92000 4.38151 4.53650 4.60180 4.88099 4.94198
5.11943 5.14500 5.37810 5.39218 5.52756 5.92485 6.07542 6.15822
6.48075 6.51711 6.73483 6.94716 6.97332 7.04878 7.18078 7.30730
7.32956 7.59915 7.86190 8.10355 8.29604 8.63885 9.12411 9.42840
9.68690 11.13597
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.053595 B = 0.004640 C = 0.004481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.313703 B = 6032.978310 C = 6247.443254
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.028 3.972
3 H 0.051 0.949
4 C -0.498 4.498
5 H 0.073 0.927
6 C 0.057 3.943
7 N -0.898 5.898
8 Si 0.900 3.100
9 H -0.277 1.277
10 H -0.289 1.289
11 H -0.277 1.277
12 C 0.517 3.483
13 O -0.551 6.551
14 N -0.741 5.741
15 C 0.193 3.807
16 C -0.177 4.177
17 C -0.182 4.182
18 C -0.023 4.023
19 N -0.455 5.455
20 C 0.075 3.925
21 C 0.002 3.998
22 H 0.011 0.989
23 H 0.030 0.970
24 H 0.092 0.908
25 H 0.260 0.740
26 H 0.396 0.604
27 H 0.064 0.936
28 H 0.060 0.940
29 H 0.136 0.864
30 H 0.160 0.840
31 H 0.070 0.930
32 H 0.082 0.918
33 H 0.081 0.919
34 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.098 2.175 -19.420 19.966
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.007 3.993
3 H 0.069 0.931
4 C -0.537 4.537
5 H 0.092 0.908
6 C -0.143 4.143
7 N -0.538 5.538
8 Si 0.728 3.272
9 H -0.202 1.202
10 H -0.215 1.215
11 H -0.203 1.203
12 C 0.307 3.693
13 O -0.428 6.428
14 N -0.395 5.395
15 C 0.069 3.931
16 C -0.185 4.185
17 C -0.207 4.207
18 C -0.152 4.152
19 N -0.131 5.131
20 C -0.067 4.067
21 C -0.129 4.129
22 H 0.030 0.970
23 H 0.049 0.951
24 H 0.110 0.890
25 H 0.070 0.930
26 H 0.229 0.771
27 H 0.082 0.918
28 H 0.079 0.921
29 H 0.154 0.846
30 H 0.177 0.823
31 H 0.088 0.912
32 H 0.101 0.899
33 H 0.100 0.900
34 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -3.946 1.573 -19.445 19.903
hybrid contribution -0.052 0.035 0.623 0.626
sum -3.998 1.608 -18.822 19.309
Atomic orbital electron populations
1.21726 0.96686 0.99675 1.00813 1.18860 0.94066 0.96835 0.89516
0.93099 1.21137 1.30682 1.12778 0.89076 0.90849 1.24949 0.95199
0.95111 0.99055 1.69868 1.37246 1.23237 1.23471 0.86519 0.79261
0.79716 0.81688 1.20216 1.21461 1.20250 1.21933 0.78538 0.84291
0.84569 1.90517 1.38268 1.27101 1.86891 1.46385 1.55247 1.32560
1.05272 1.19359 0.98321 0.94494 0.80915 1.19589 0.96947 1.01991
0.99925 1.20878 1.01389 1.00841 0.97584 1.21774 0.89231 1.00909
1.03302 1.43952 1.17436 1.28619 1.23141 1.21984 0.88938 1.03537
0.92239 1.21725 1.00713 0.99080 0.91371 0.96960 0.95114 0.88966
0.93028 0.77084 0.91818 0.92148 0.84594 0.82306 0.91185 0.89907
0.90014 0.82077
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.13 8.86 37.16 0.33 -2.80 16
2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16
3 H 0.05 1.37 8.14 -51.93 -0.42 0.95 16
4 C -0.50 -14.62 8.38 -34.44 -0.29 -14.91 16
5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16
6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -25.86 11.31 55.43 0.63 -25.24 16
8 Si 0.90 22.36 29.54 -169.99 -5.02 17.33 16
9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16
12 C 0.52 12.47 7.15 -10.98 -0.08 12.39 16
13 O -0.55 -15.11 15.46 5.56 0.09 -15.02 16
14 N -0.74 -14.09 5.44 -61.47 -0.33 -14.42 16
15 C 0.19 3.23 6.17 -5.19 -0.03 3.20 16
16 C -0.18 -2.49 5.50 -104.82 -0.58 -3.07 16
17 C -0.18 -2.34 10.81 -39.78 -0.43 -2.77 16
18 C -0.02 -0.25 11.43 -16.75 -0.19 -0.44 16
19 N -0.46 -4.64 3.15 -124.54 -0.39 -5.03 16
20 C 0.07 0.44 11.12 59.84 0.67 1.11 16
21 C 0.00 0.02 11.35 -16.75 -0.19 -0.17 16
22 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16
23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16
24 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16
25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16
26 H 0.40 6.85 7.88 -40.82 -0.32 6.53 16
27 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16
28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
29 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16
30 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16
31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16
32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16
34 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16
LS Contribution 292.66 15.07 4.41 4.41
Total: -1.00 -33.53 292.66 -6.50 -40.03
By element:
Atomic # 1 Polarization: 8.10 SS G_CDS: -4.75 Total: 3.36 kcal
Atomic # 6 Polarization: -4.29 SS G_CDS: -1.13 Total: -5.43 kcal
Atomic # 7 Polarization: -44.59 SS G_CDS: -0.10 Total: -44.69 kcal
Atomic # 8 Polarization: -15.11 SS G_CDS: 0.09 Total: -15.02 kcal
Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal
Total LS contribution 4.41 Total: 4.41 kcal
Total: -33.53 -6.50 -40.03 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597340171.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.709 kcal
(2) G-P(sol) polarization free energy of solvation -33.531 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.178 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.503 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.035 kcal
(6) G-S(sol) free energy of system = (1) + (5) 6.675 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds