Wall clock time and date at job start Mon Mar 30 2020 03:42:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.09007 * 109.47427 * 2 1
4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3
5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1
6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1
7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2
8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2
9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4
10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4
11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4
12 12 C 1.50703 * 109.47077 * 240.00529 * 2 1 3
13 13 O 1.21283 * 120.00011 * 240.00329 * 12 2 1
14 14 N 1.34775 * 120.00072 * 59.99775 * 12 2 1
15 15 C 1.46499 * 120.00181 * 180.02562 * 14 12 2
16 16 C 1.50700 * 109.47257 * 180.02562 * 15 14 12
17 17 C 1.40890 * 126.29025 * 90.02446 * 16 15 14
18 18 C 1.34853 * 107.41425 * 179.97438 * 17 16 15
19 19 N 1.36336 * 108.22161 * 359.97438 * 18 17 16
20 20 C 1.46492 * 125.63927 * 180.02562 * 19 18 17
21 21 C 1.34845 * 126.29047 * 269.71219 * 16 15 14
22 22 H 1.09005 * 109.46870 * 59.99511 * 1 2 3
23 23 H 1.08998 * 109.47156 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.46783 * 299.99852 * 1 2 3
25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4
26 26 H 0.97002 * 120.00040 * 0.02562 * 14 12 2
27 27 H 1.09009 * 109.46700 * 300.00334 * 15 14 12
28 28 H 1.08998 * 109.47265 * 60.00066 * 15 14 12
29 29 H 1.08001 * 126.29397 * 359.94221 * 17 16 15
30 30 H 1.07999 * 125.88468 * 180.02562 * 18 17 16
31 31 H 1.09003 * 109.47151 * 90.02475 * 20 19 18
32 32 H 1.09001 * 109.47383 * 210.02484 * 20 19 18
33 33 H 1.08999 * 109.47261 * 330.02421 * 20 19 18
34 34 H 1.08004 * 125.89003 * 0.02562 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6532 -1.5886 1.1312
6 6 1.6946 -0.2428 2.4826
7 7 0.9386 0.8265 2.6034
8 14 2.3109 -1.1280 4.0077
9 1 3.7959 -1.1287 4.0136
10 1 1.8119 -0.4309 5.2203
11 1 1.8152 -2.5279 4.0019
12 6 2.0323 -0.7103 -1.2306
13 8 2.7295 -1.6965 -1.1194
14 7 1.7067 -0.2498 -2.4546
15 6 2.1945 -0.9406 -3.6509
16 6 1.6928 -0.2297 -4.8813
17 6 2.3431 0.8184 -5.5623
18 6 1.5620 1.1684 -6.6043
19 7 0.4536 0.3746 -6.5919
20 6 -0.6474 0.4308 -7.5566
21 6 0.5417 -0.4836 -5.5361
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0276 -0.0005
24 1 -0.3633 0.5138 0.8900
25 1 0.7006 1.1552 3.4844
26 1 1.1493 0.5391 -2.5435
27 1 3.2846 -0.9410 -3.6510
28 1 1.8308 -1.9681 -3.6508
29 1 3.2923 1.2605 -5.2980
30 1 1.7777 1.9434 -7.3249
31 1 -0.4362 -0.2412 -8.3885
32 1 -1.5734 0.1258 -7.0693
33 1 -0.7517 1.4496 -7.9299
34 1 -0.1860 -1.2358 -5.2691
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597340171.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:14
Heat of formation + Delta-G solvation = -15.318149 kcal
Electronic energy + Delta-G solvation = -16127.980953 eV
Core-core repulsion = 13446.718407 eV
Total energy + Delta-G solvation = -2681.262546 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-42.07233 -40.38330 -36.02135 -35.69569 -33.58574 -32.40311 -30.15453 -28.21345
-27.17004 -25.80194 -23.96211 -21.19613 -21.09444 -20.48693 -18.42512 -18.12266
-17.28245 -16.78456 -16.19145 -16.02538 -15.86578 -14.82077 -14.68955 -14.61586
-14.25271 -13.71250 -13.43448 -13.40158 -13.09611 -12.94381 -12.73507 -12.68570
-12.55728 -12.49886 -12.15912 -11.97713 -11.02524 -10.61219 -10.34275 -9.88037
-9.40936 -9.04746 -8.12362 -6.23078 1.30960 1.42482 1.44679 1.53205
1.86197 1.98873 2.15901 2.44523 2.88591 3.16667 4.00029 4.19029
4.22015 4.33217 4.48834 4.50503 4.51614 4.76788 4.77093 4.82915
4.89902 4.98699 5.05138 5.24275 5.51614 5.53646 5.66061 5.77801
5.96956 6.01649 6.24443 6.27728 6.54615 6.79387 6.92091 7.42519
7.60189 8.93340
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.053595 B = 0.004640 C = 0.004481
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 522.313703 B = 6032.978310 C = 6247.443254
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.117 4.117
2 C 0.023 3.977
3 H 0.039 0.961
4 C -0.530 4.530
5 H 0.048 0.952
6 C 0.019 3.981
7 N -0.912 5.912
8 Si 0.957 3.043
9 H -0.277 1.277
10 H -0.273 1.273
11 H -0.276 1.276
12 C 0.518 3.482
13 O -0.592 6.592
14 N -0.718 5.718
15 C 0.198 3.802
16 C -0.205 4.205
17 C -0.212 4.212
18 C -0.011 4.011
19 N -0.451 5.451
20 C 0.067 3.933
21 C 0.003 3.997
22 H 0.049 0.951
23 H 0.023 0.977
24 H 0.071 0.929
25 H 0.265 0.735
26 H 0.406 0.594
27 H 0.050 0.950
28 H 0.056 0.944
29 H 0.133 0.867
30 H 0.192 0.808
31 H 0.084 0.916
32 H 0.093 0.907
33 H 0.101 0.899
34 H 0.176 0.824
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.347 2.855 -20.998 21.855
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.002 3.998
3 H 0.056 0.944
4 C -0.569 4.569
5 H 0.067 0.933
6 C -0.180 4.180
7 N -0.551 5.551
8 Si 0.783 3.217
9 H -0.202 1.202
10 H -0.198 1.198
11 H -0.201 1.201
12 C 0.307 3.693
13 O -0.472 6.472
14 N -0.371 5.371
15 C 0.075 3.925
16 C -0.212 4.212
17 C -0.236 4.236
18 C -0.141 4.141
19 N -0.126 5.126
20 C -0.073 4.073
21 C -0.129 4.129
22 H 0.068 0.932
23 H 0.042 0.958
24 H 0.090 0.910
25 H 0.074 0.926
26 H 0.242 0.758
27 H 0.069 0.931
28 H 0.074 0.926
29 H 0.151 0.849
30 H 0.209 0.791
31 H 0.103 0.897
32 H 0.112 0.888
33 H 0.120 0.880
34 H 0.193 0.807
Dipole moment (debyes) X Y Z Total
from point charges -5.234 2.293 -21.078 21.839
hybrid contribution 0.304 -0.127 0.996 1.049
sum -4.931 2.166 -20.082 20.791
Atomic orbital electron populations
1.21532 0.95013 0.99384 1.01569 1.18811 0.95412 0.95829 0.89732
0.94352 1.21278 1.31571 1.12830 0.91174 0.93346 1.25615 0.95167
0.95783 1.01439 1.69947 1.37186 1.23662 1.24341 0.85630 0.78644
0.78742 0.78720 1.20205 1.19822 1.20097 1.21581 0.78310 0.83748
0.85658 1.90491 1.40221 1.28867 1.87621 1.46178 1.53985 1.32302
1.04597 1.19338 0.97564 0.94503 0.81127 1.19370 0.98651 1.03457
0.99702 1.21007 1.02156 1.01469 0.98981 1.22223 0.88495 1.00701
1.02641 1.44266 1.18077 1.27351 1.22894 1.22321 0.87871 1.05362
0.91765 1.21907 1.00126 0.99321 0.91563 0.93233 0.95788 0.91040
0.92595 0.75814 0.93148 0.92565 0.84939 0.79085 0.89715 0.88810
0.87995 0.80670
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.56 8.86 71.98 0.64 -4.92 16
2 C 0.02 1.24 2.64 -12.29 -0.03 1.20 16
3 H 0.04 2.11 8.14 -2.38 -0.02 2.09 16
4 C -0.53 -31.88 8.38 25.60 0.21 -31.66 16
5 H 0.05 3.10 6.75 -2.91 -0.02 3.08 16
6 C 0.02 1.09 5.30 84.65 0.45 1.54 16
7 N -0.91 -52.47 11.31 21.45 0.24 -52.23 16
8 Si 0.96 46.01 29.54 68.60 2.03 48.03 16
9 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16
12 C 0.52 25.48 7.15 87.66 0.63 26.11 16
13 O -0.59 -33.51 15.46 -3.04 -0.05 -33.55 16
14 N -0.72 -27.32 5.44 -466.78 -2.54 -29.86 16
15 C 0.20 6.69 6.17 85.63 0.53 7.22 16
16 C -0.20 -5.56 5.50 -19.99 -0.11 -5.67 16
17 C -0.21 -5.20 10.81 22.14 0.24 -4.96 16
18 C -0.01 -0.20 11.43 83.22 0.95 0.75 16
19 N -0.45 -7.77 3.15 -547.92 -1.72 -9.50 16
20 C 0.07 0.53 11.12 127.77 1.42 1.95 16
21 C 0.00 0.07 11.35 83.21 0.94 1.02 16
22 H 0.05 1.92 7.56 -2.38 -0.02 1.90 16
23 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16
24 H 0.07 3.71 6.06 -2.38 -0.01 3.70 16
25 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16
26 H 0.41 13.70 7.88 -92.71 -0.73 12.97 16
27 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16
28 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16
29 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16
30 H 0.19 2.17 8.06 -2.91 -0.02 2.15 16
31 H 0.08 0.47 8.14 -2.39 -0.02 0.46 16
32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
33 H 0.10 0.43 8.14 -2.39 -0.02 0.42 16
34 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16
Total: -1.00 -73.14 292.66 4.19 -68.95
By element:
Atomic # 1 Polarization: 15.23 SS G_CDS: 0.36 Total: 15.59 kcal
Atomic # 6 Polarization: -13.30 SS G_CDS: 5.87 Total: -7.43 kcal
Atomic # 7 Polarization: -87.57 SS G_CDS: -4.02 Total: -91.59 kcal
Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.55 kcal
Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal
Total: -73.14 4.19 -68.95 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597340171.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.637 kcal
(2) G-P(sol) polarization free energy of solvation -73.142 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.955 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.318 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds