Wall clock time and date at job start Mon Mar 30 2020 03:41:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47131 * 2 1
4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3
5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1
6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1
7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2
8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2
9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4
10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4
12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3
13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1
14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1
15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2
16 16 C 1.47193 * 115.55142 * 34.33386 * 15 14 12
17 17 N 5.01217 * 127.32988 * 120.12305 * 2 1 3
18 18 C 1.53001 * 117.49881 * 248.62119 * 15 14 12
19 19 C 1.53004 * 117.49452 * 179.97438 * 15 14 12
20 20 C 1.53001 * 117.49727 * 214.98173 * 19 15 14
21 21 C 1.52998 * 117.50194 * 0.02562 * 19 15 14
22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3
23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3
24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3
25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4
26 26 H 0.96995 * 120.00581 * 0.02562 * 14 12 2
27 27 H 1.08997 * 117.49957 * 0.02562 * 18 15 14
28 28 H 1.09004 * 117.49464 * 145.02844 * 18 15 14
29 29 H 1.09000 * 109.47290 * 60.00219 * 20 19 15
30 30 H 1.08996 * 109.47120 * 180.02562 * 20 19 15
31 31 H 1.09004 * 109.47158 * 300.00502 * 20 19 15
32 32 H 1.09006 * 109.46872 * 60.00205 * 21 19 15
33 33 H 1.08998 * 109.47358 * 179.97438 * 21 19 15
34 34 H 1.08989 * 109.47315 * 300.00028 * 21 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6945 -0.2426 -2.4828
7 7 0.9385 0.8267 -2.6034
8 14 2.3109 -1.1277 -4.0079
9 1 1.8153 -2.5276 -4.0022
10 1 1.8119 -0.4304 -5.2204
11 1 3.7959 -1.1284 -4.0138
12 6 2.0324 -0.7104 1.2304
13 8 2.7296 -1.6965 1.1191
14 7 1.7068 -0.2500 2.4545
15 6 2.1947 -0.9409 3.6507
16 6 3.5346 -1.5394 3.5360
17 7 4.5694 -2.0001 3.4472
18 6 1.1647 -1.6735 4.5129
19 6 1.7909 -0.3688 5.0110
20 6 2.8103 -0.4635 6.1480
21 6 0.9080 0.8807 5.0181
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.7011 1.1560 -3.4844
26 1 1.1488 0.5384 2.5435
27 1 0.1241 -1.6417 4.1899
28 1 1.4792 -2.5990 4.9953
29 1 3.7175 0.0720 5.8682
30 1 2.3901 -0.0201 7.0507
31 1 3.0495 -1.5104 6.3353
32 1 -0.0301 0.6657 4.5061
33 1 0.7009 1.1735 6.0473
34 1 1.4236 1.6928 4.5057
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597672867.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:52
Heat of formation + Delta-G solvation = 8.672137 kcal
Electronic energy + Delta-G solvation = -16715.427818 eV
Core-core repulsion = 14035.205569 eV
Total energy + Delta-G solvation = -2680.222249 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.04464 -37.91833 -35.52633 -33.78781 -32.93164 -30.49305 -29.11143 -27.72445
-25.17221 -24.03644 -22.44372 -20.33013 -19.27838 -17.47507 -16.29124 -16.07782
-15.09555 -14.56535 -14.27711 -14.10939 -13.96642 -13.40590 -13.21842 -12.75032
-12.56361 -12.43241 -12.42476 -12.30664 -11.91420 -11.59933 -11.42642 -11.02432
-10.82186 -10.71666 -10.64504 -10.28720 -10.11052 -9.95767 -9.02894 -8.69231
-8.55354 -8.35730 -6.05894 -4.09040 2.69692 2.88133 3.36123 3.38145
3.43769 3.52496 3.53685 3.89809 3.97572 4.45168 4.54773 4.80261
4.82329 4.99600 5.27800 5.42986 5.54701 5.64572 5.68521 5.69130
5.75062 5.92346 6.07834 6.10988 6.55636 6.76309 6.79603 6.88366
7.41088 7.70333 7.85663 7.95169 8.07168 8.33870 8.99457 9.08474
9.56616 11.01614
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038362 B = 0.006487 C = 0.005814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 729.717661 B = 4315.175016 C = 4814.697505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.034 3.966
3 H 0.055 0.945
4 C -0.503 4.503
5 H 0.073 0.927
6 C 0.060 3.940
7 N -0.896 5.896
8 Si 0.901 3.099
9 H -0.276 1.276
10 H -0.287 1.287
11 H -0.277 1.277
12 C 0.518 3.482
13 O -0.528 6.528
14 N -0.707 5.707
15 C 0.194 3.806
16 C 0.253 3.747
17 N -0.415 5.415
18 C -0.154 4.154
19 C -0.100 4.100
20 C -0.120 4.120
21 C -0.123 4.123
22 H 0.013 0.987
23 H 0.095 0.905
24 H 0.033 0.967
25 H 0.262 0.738
26 H 0.408 0.592
27 H 0.116 0.884
28 H 0.105 0.895
29 H 0.063 0.937
30 H 0.071 0.929
31 H 0.061 0.939
32 H 0.068 0.932
33 H 0.071 0.929
34 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.233 2.173 15.937 16.633
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.013 3.987
3 H 0.073 0.927
4 C -0.541 4.541
5 H 0.091 0.909
6 C -0.141 4.141
7 N -0.536 5.536
8 Si 0.729 3.271
9 H -0.202 1.202
10 H -0.213 1.213
11 H -0.202 1.202
12 C 0.309 3.691
13 O -0.401 6.401
14 N -0.364 5.364
15 C 0.102 3.898
16 C -0.065 4.065
17 N -0.092 5.092
18 C -0.194 4.194
19 C -0.103 4.103
20 C -0.178 4.178
21 C -0.180 4.180
22 H 0.032 0.968
23 H 0.113 0.887
24 H 0.052 0.948
25 H 0.072 0.928
26 H 0.245 0.755
27 H 0.134 0.866
28 H 0.124 0.876
29 H 0.082 0.918
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.087 0.913
33 H 0.090 0.910
34 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -2.223 0.874 15.487 15.670
hybrid contribution -0.386 0.090 -0.925 1.006
sum -2.609 0.964 14.563 14.826
Atomic orbital electron populations
1.21761 0.96249 1.00005 1.01092 1.18878 0.94311 0.96833 0.88678
0.92738 1.21092 1.31120 1.12990 0.88940 0.90856 1.24927 0.95023
0.95057 0.99084 1.69852 1.36934 1.23045 1.23723 0.86499 0.79309
0.79751 0.81557 1.20167 1.21306 1.20206 1.22283 0.78346 0.84373
0.84145 1.90583 1.37200 1.26507 1.85848 1.45855 1.55144 1.32322
1.03054 1.16888 0.85821 1.01005 0.86088 1.27096 0.92781 0.93628
0.93010 1.81113 1.11742 1.08555 1.07808 1.23934 0.98950 0.95857
1.00652 1.22106 0.99879 0.96299 0.92018 1.21441 0.97635 1.02507
0.96189 1.21429 0.98542 0.94993 1.03068 0.96799 0.88669 0.94823
0.92848 0.75477 0.86618 0.87622 0.91779 0.91008 0.92044 0.91346
0.91020 0.91267
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.90 8.86 37.16 0.33 -2.57 16
2 C 0.03 0.83 2.64 -92.92 -0.25 0.58 16
3 H 0.05 1.36 8.14 -51.93 -0.42 0.94 16
4 C -0.50 -14.23 8.38 -34.44 -0.29 -14.52 16
5 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16
6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16
7 N -0.90 -24.80 11.31 55.43 0.63 -24.18 16
8 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16
9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
12 C 0.52 11.59 6.99 -10.99 -0.08 11.51 16
13 O -0.53 -13.86 13.62 5.56 0.08 -13.79 16
14 N -0.71 -11.69 5.39 -50.22 -0.27 -11.96 16
15 C 0.19 2.87 2.84 -134.60 -0.38 2.48 16
16 C 0.25 4.68 11.84 -20.76 -0.25 4.44 16
17 N -0.42 -8.59 18.54 42.16 0.78 -7.81 16
18 C -0.15 -1.69 9.43 -26.70 -0.25 -1.94 16
19 C -0.10 -1.00 2.70 -154.48 -0.42 -1.42 16
20 C -0.12 -1.07 8.86 37.16 0.33 -0.74 16
21 C -0.12 -0.94 8.63 37.16 0.32 -0.62 16
22 H 0.01 0.23 7.56 -51.93 -0.39 -0.16 16
23 H 0.09 2.31 6.06 -51.93 -0.31 2.00 16
24 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16
25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16
26 H 0.41 5.47 6.82 -40.82 -0.28 5.20 16
27 H 0.12 1.14 8.05 -51.93 -0.42 0.72 16
28 H 0.11 1.08 8.05 -51.93 -0.42 0.66 16
29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16
30 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16
31 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16
32 H 0.07 0.49 7.81 -51.93 -0.41 0.08 16
33 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16
34 H 0.07 0.54 8.05 -51.93 -0.42 0.12 16
LS Contribution 291.80 15.07 4.40 4.40
Total: -1.00 -32.94 291.80 -5.07 -38.01
By element:
Atomic # 1 Polarization: 4.27 SS G_CDS: -4.64 Total: -0.37 kcal
Atomic # 6 Polarization: -0.23 SS G_CDS: -1.02 Total: -1.25 kcal
Atomic # 7 Polarization: -45.08 SS G_CDS: 1.14 Total: -43.94 kcal
Atomic # 8 Polarization: -13.86 SS G_CDS: 0.08 Total: -13.79 kcal
Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -32.94 -5.07 -38.01 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597672867.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.679 kcal
(2) G-P(sol) polarization free energy of solvation -32.939 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.740 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.067 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.006 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.672 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds