Wall clock time and date at job start Mon Mar 30 2020 03:41:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09004 * 109.47131 * 2 1
4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3
5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1
6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1
7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2
8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2
9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4
10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4
11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4
12 12 C 1.50700 * 109.47313 * 120.00230 * 2 1 3
13 13 O 1.21277 * 120.00023 * 119.99783 * 12 2 1
14 14 N 1.34774 * 119.99464 * 300.00010 * 12 2 1
15 15 C 1.46505 * 119.99513 * 179.97438 * 14 12 2
16 16 C 1.47193 * 115.55142 * 34.33386 * 15 14 12
17 17 N 5.01217 * 127.32988 * 120.12305 * 2 1 3
18 18 C 1.53001 * 117.49881 * 248.62119 * 15 14 12
19 19 C 1.53004 * 117.49452 * 179.97438 * 15 14 12
20 20 C 1.53001 * 117.49727 * 214.98173 * 19 15 14
21 21 C 1.52998 * 117.50194 * 0.02562 * 19 15 14
22 22 H 1.08994 * 109.47175 * 300.00017 * 1 2 3
23 23 H 1.09001 * 109.47192 * 59.99988 * 1 2 3
24 24 H 1.09004 * 109.47084 * 179.97438 * 1 2 3
25 25 H 0.97005 * 119.99651 * 179.97438 * 7 6 4
26 26 H 0.96995 * 120.00581 * 0.02562 * 14 12 2
27 27 H 1.08997 * 117.49957 * 0.02562 * 18 15 14
28 28 H 1.09004 * 117.49464 * 145.02844 * 18 15 14
29 29 H 1.09000 * 109.47290 * 60.00219 * 20 19 15
30 30 H 1.08996 * 109.47120 * 180.02562 * 20 19 15
31 31 H 1.09004 * 109.47158 * 300.00502 * 20 19 15
32 32 H 1.09006 * 109.46872 * 60.00205 * 21 19 15
33 33 H 1.08998 * 109.47358 * 179.97438 * 21 19 15
34 34 H 1.08989 * 109.47315 * 300.00028 * 21 19 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2305
5 1 2.6532 -1.5885 -1.1314
6 6 1.6945 -0.2426 -2.4828
7 7 0.9385 0.8267 -2.6034
8 14 2.3109 -1.1277 -4.0079
9 1 1.8153 -2.5276 -4.0022
10 1 1.8119 -0.4304 -5.2204
11 1 3.7959 -1.1284 -4.0138
12 6 2.0324 -0.7104 1.2304
13 8 2.7296 -1.6965 1.1191
14 7 1.7068 -0.2500 2.4545
15 6 2.1947 -0.9409 3.6507
16 6 3.5346 -1.5394 3.5360
17 7 4.5694 -2.0001 3.4472
18 6 1.1647 -1.6735 4.5129
19 6 1.7909 -0.3688 5.0110
20 6 2.8103 -0.4635 6.1480
21 6 0.9080 0.8807 5.0181
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.7011 1.1560 -3.4844
26 1 1.1488 0.5384 2.5435
27 1 0.1241 -1.6417 4.1899
28 1 1.4792 -2.5990 4.9953
29 1 3.7175 0.0720 5.8682
30 1 2.3901 -0.0201 7.0507
31 1 3.0495 -1.5104 6.3353
32 1 -0.0301 0.6657 4.5061
33 1 0.7009 1.1735 6.0473
34 1 1.4236 1.6928 4.5057
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597672867.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:51
Heat of formation + Delta-G solvation = -13.923899 kcal
Electronic energy + Delta-G solvation = -16716.407656 eV
Core-core repulsion = 14035.205569 eV
Total energy + Delta-G solvation = -2681.202087 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.34136 -39.39273 -36.96422 -35.78746 -34.41946 -32.33409 -30.04827 -28.40834
-27.19396 -25.38699 -24.05448 -21.70642 -20.44208 -18.96361 -18.10036 -17.81899
-16.50547 -16.34357 -15.83801 -15.14363 -15.02892 -14.86752 -14.57189 -14.35929
-13.92852 -13.80903 -13.55374 -13.36800 -13.07463 -12.97936 -12.73938 -12.68437
-12.56513 -12.22003 -12.11484 -12.02699 -11.81285 -11.10128 -11.01840 -10.59918
-10.31585 -9.86235 -8.16882 -6.26426 1.38636 1.39679 1.41269 1.48703
1.52951 1.84407 2.24968 2.44271 2.72891 2.84235 3.12808 3.55987
3.78109 4.06816 4.08909 4.42946 4.78047 4.78507 4.80907 4.86832
4.97130 5.03407 5.05892 5.07314 5.09955 5.29778 5.44696 5.47821
5.51188 5.75014 5.95006 6.21717 6.47869 6.68941 6.82329 7.36931
7.47388 8.88365
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038362 B = 0.006487 C = 0.005814
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 729.717661 B = 4315.175016 C = 4814.697505
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.029 3.971
3 H 0.045 0.955
4 C -0.532 4.532
5 H 0.042 0.958
6 C 0.025 3.975
7 N -0.906 5.906
8 Si 0.950 3.050
9 H -0.277 1.277
10 H -0.270 1.270
11 H -0.282 1.282
12 C 0.520 3.480
13 O -0.577 6.577
14 N -0.682 5.682
15 C 0.140 3.860
16 C 0.265 3.735
17 N -0.472 5.472
18 C -0.137 4.137
19 C -0.061 4.061
20 C -0.125 4.125
21 C -0.128 4.128
22 H 0.062 0.938
23 H 0.071 0.929
24 H 0.024 0.976
25 H 0.266 0.734
26 H 0.425 0.575
27 H 0.136 0.864
28 H 0.113 0.887
29 H 0.052 0.948
30 H 0.105 0.895
31 H 0.055 0.945
32 H 0.079 0.921
33 H 0.099 0.901
34 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.135 3.209 17.783 19.083
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.008 3.992
3 H 0.063 0.937
4 C -0.571 4.571
5 H 0.060 0.940
6 C -0.175 4.175
7 N -0.545 5.545
8 Si 0.776 3.224
9 H -0.203 1.203
10 H -0.195 1.195
11 H -0.208 1.208
12 C 0.310 3.690
13 O -0.455 6.455
14 N -0.338 5.338
15 C 0.049 3.951
16 C -0.052 4.052
17 N -0.150 5.150
18 C -0.177 4.177
19 C -0.064 4.064
20 C -0.182 4.182
21 C -0.185 4.185
22 H 0.080 0.920
23 H 0.089 0.911
24 H 0.043 0.957
25 H 0.075 0.925
26 H 0.266 0.734
27 H 0.154 0.846
28 H 0.132 0.868
29 H 0.071 0.929
30 H 0.123 0.877
31 H 0.074 0.926
32 H 0.098 0.902
33 H 0.117 0.883
34 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges -4.163 1.956 17.378 17.977
hybrid contribution 0.197 -0.199 -1.414 1.442
sum -3.965 1.757 15.964 16.543
Atomic orbital electron populations
1.21568 0.94177 0.99747 1.02254 1.18803 0.95942 0.95814 0.88690
0.93712 1.21231 1.31681 1.12799 0.91374 0.93983 1.25492 0.95170
0.95757 1.01078 1.69914 1.36855 1.23288 1.24407 0.85748 0.78395
0.78904 0.79371 1.20276 1.19506 1.20836 1.21820 0.78004 0.83667
0.85529 1.90565 1.39467 1.28623 1.86839 1.45339 1.54086 1.32295
1.02102 1.17534 0.85289 1.05024 0.87245 1.27921 0.93366 0.92450
0.91497 1.81088 1.13685 1.10795 1.09409 1.24139 0.98596 0.96894
0.98051 1.22352 0.98827 0.96978 0.88209 1.21550 0.97158 1.02475
0.97044 1.21582 0.98301 0.93414 1.05164 0.91963 0.91051 0.95655
0.92476 0.73442 0.84637 0.86838 0.92888 0.87676 0.92558 0.90220
0.88259 0.91198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.08 8.86 71.98 0.64 -4.44 16
2 C 0.03 1.41 2.64 -12.29 -0.03 1.37 16
3 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16
4 C -0.53 -30.97 8.38 25.60 0.21 -30.75 16
5 H 0.04 2.66 6.75 -2.91 -0.02 2.64 16
6 C 0.02 1.38 5.30 84.66 0.45 1.83 16
7 N -0.91 -50.03 11.31 21.45 0.24 -49.78 16
8 Si 0.95 45.46 29.54 68.60 2.03 47.48 16
9 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16
10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16
12 C 0.52 23.40 6.99 87.66 0.61 24.01 16
13 O -0.58 -31.32 13.62 -3.02 -0.04 -31.36 16
14 N -0.68 -21.47 5.39 -431.20 -2.32 -23.79 16
15 C 0.14 3.91 2.84 1.80 0.01 3.92 16
16 C 0.26 9.89 11.84 89.44 1.06 10.95 16
17 N -0.47 -20.23 18.54 20.01 0.37 -19.86 16
18 C -0.14 -2.57 9.43 30.61 0.29 -2.28 16
19 C -0.06 -1.01 2.70 -52.16 -0.14 -1.15 16
20 C -0.13 -1.84 8.86 71.98 0.64 -1.20 16
21 C -0.13 -1.33 8.63 71.98 0.62 -0.71 16
22 H 0.06 1.98 7.56 -2.39 -0.02 1.96 16
23 H 0.07 3.41 6.06 -2.39 -0.01 3.39 16
24 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16
25 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16
26 H 0.42 10.16 6.82 -92.71 -0.63 9.53 16
27 H 0.14 2.06 8.05 -2.39 -0.02 2.04 16
28 H 0.11 1.99 8.05 -2.38 -0.02 1.97 16
29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
30 H 0.10 0.89 7.92 -2.39 -0.02 0.87 16
31 H 0.06 0.90 7.90 -2.38 -0.02 0.88 16
32 H 0.08 0.71 7.81 -2.38 -0.02 0.69 16
33 H 0.10 0.59 7.92 -2.39 -0.02 0.57 16
34 H 0.07 0.79 8.05 -2.39 -0.02 0.77 16
Total: -1.00 -75.10 291.80 5.10 -70.00
By element:
Atomic # 1 Polarization: 5.29 SS G_CDS: 0.47 Total: 5.77 kcal
Atomic # 6 Polarization: -2.81 SS G_CDS: 4.35 Total: 1.54 kcal
Atomic # 7 Polarization: -91.72 SS G_CDS: -1.71 Total: -93.43 kcal
Atomic # 8 Polarization: -31.32 SS G_CDS: -0.04 Total: -31.36 kcal
Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal
Total: -75.10 5.10 -70.00 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597672867.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.076 kcal
(2) G-P(sol) polarization free energy of solvation -75.101 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.024 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.000 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.924 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds