Wall clock time and date at job start Mon Mar 30 2020 03:41:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.47056 * 2 1
4 4 C 1.50702 * 109.47106 * 119.99842 * 2 1 3
5 5 H 1.08002 * 119.99947 * 119.99989 * 4 2 1
6 6 C 1.37874 * 120.00159 * 300.00026 * 4 2 1
7 7 N 1.31512 * 120.00347 * 180.02562 * 6 4 2
8 8 Si 1.86798 * 119.99717 * 359.97438 * 6 4 2
9 9 H 1.48500 * 109.47069 * 90.00189 * 8 6 4
10 10 H 1.48503 * 109.47139 * 209.99687 * 8 6 4
11 11 H 1.48494 * 109.47501 * 329.99694 * 8 6 4
12 12 C 1.50704 * 109.47402 * 239.99945 * 2 1 3
13 13 O 1.21276 * 119.99927 * 239.99970 * 12 2 1
14 14 N 1.34775 * 119.99633 * 59.99795 * 12 2 1
15 15 C 1.46501 * 119.99891 * 180.02562 * 14 12 2
16 16 C 1.47206 * 115.55017 * 34.41666 * 15 14 12
17 17 N 5.01266 * 99.98601 * 224.30873 * 2 1 3
18 18 C 1.53000 * 117.50145 * 248.74868 * 15 14 12
19 19 C 1.52999 * 60.00076 * 252.48669 * 18 15 14
20 20 C 1.53001 * 117.49692 * 252.51245 * 19 18 15
21 21 C 1.52999 * 117.50008 * 107.49041 * 19 18 15
22 22 H 1.08995 * 109.46997 * 180.02562 * 1 2 3
23 23 H 1.09000 * 109.46644 * 300.00449 * 1 2 3
24 24 H 1.08995 * 109.46895 * 59.99936 * 1 2 3
25 25 H 0.96996 * 120.00294 * 179.97438 * 7 6 4
26 26 H 0.97000 * 120.00669 * 0.02562 * 14 12 2
27 27 H 1.09004 * 117.49333 * 359.97438 * 18 15 14
28 28 H 1.08999 * 117.50124 * 144.99544 * 18 15 14
29 29 H 1.08992 * 109.47472 * 128.62100 * 20 19 18
30 30 H 1.09006 * 109.46746 * 248.62274 * 20 19 18
31 31 H 1.08997 * 109.46983 * 8.61551 * 20 19 18
32 32 H 1.09000 * 109.47104 * 351.37022 * 21 19 18
33 33 H 1.08994 * 109.47437 * 111.38130 * 21 19 18
34 34 H 1.09003 * 109.46603 * 231.37652 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6993 -0.2393 2.4827
7 7 2.1380 -0.8589 3.5566
8 14 0.6259 1.2799 2.6540
9 1 -0.8020 0.8745 2.6992
10 1 0.9772 1.9954 3.9070
11 1 0.8492 2.1774 1.4923
12 6 2.0324 -0.7104 -1.2305
13 8 2.7297 -1.6964 -1.1191
14 7 1.7068 -0.2499 -2.4545
15 6 2.1947 -0.9408 -3.6507
16 6 2.3094 -2.4040 -3.5364
17 7 2.3992 -3.5326 -3.4484
18 6 3.2312 -0.2162 -4.5118
19 6 1.7930 -0.3679 -5.0113
20 6 1.5412 -1.3595 -6.1489
21 6 0.9121 0.8831 -5.0189
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3632 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 1.9040 -0.5273 4.4375
26 1 1.1494 0.5389 -2.5436
27 1 3.5497 0.7749 -4.1885
28 1 3.9980 -0.8227 -4.9936
29 1 0.7319 -2.0343 -5.8703
30 1 1.2653 -0.8144 -7.0517
31 1 2.4472 -1.9361 -6.3354
32 1 1.4286 1.6943 -4.5058
33 1 0.7067 1.1766 -6.0483
34 1 -0.0267 0.6694 -4.5078
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597672868.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:53
Heat of formation + Delta-G solvation = 18.886854 kcal
Electronic energy + Delta-G solvation = -16778.731987 eV
Core-core repulsion = 14098.952681 eV
Total energy + Delta-G solvation = -2679.779306 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.15909 -38.07314 -35.58472 -33.89597 -33.03864 -31.18302 -29.28247 -27.79643
-25.18604 -24.27935 -22.59334 -20.40454 -19.32889 -17.56422 -16.76920 -16.19837
-15.18556 -14.81370 -14.35282 -14.15030 -14.05764 -13.67702 -13.22908 -12.82750
-12.82408 -12.51597 -12.50523 -12.38232 -12.30126 -11.98066 -11.67550 -11.47901
-11.10133 -10.76720 -10.61086 -10.38258 -10.11329 -9.67831 -9.14577 -8.82473
-8.66840 -8.58903 -6.07259 -4.08465 2.63690 2.80726 3.20876 3.26741
3.34217 3.39738 3.43177 3.83464 3.88054 4.34795 4.46970 4.72979
4.73920 4.91118 5.21600 5.36278 5.47690 5.58499 5.61454 5.62475
5.65545 5.77163 5.85858 6.01631 6.04831 6.22693 6.37256 6.63842
6.69017 7.10159 7.46948 7.81747 7.96851 8.50312 8.92517 9.12570
9.50374 11.05688
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036321 B = 0.006969 C = 0.006236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.716436 B = 4016.624117 C = 4489.227867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.001 3.999
3 H 0.056 0.944
4 C -0.508 4.508
5 H 0.093 0.907
6 C 0.071 3.929
7 N -0.894 5.894
8 Si 0.885 3.115
9 H -0.278 1.278
10 H -0.295 1.295
11 H -0.266 1.266
12 C 0.526 3.474
13 O -0.513 6.513
14 N -0.709 5.709
15 C 0.195 3.805
16 C 0.250 3.750
17 N -0.410 5.410
18 C -0.153 4.153
19 C -0.100 4.100
20 C -0.121 4.121
21 C -0.123 4.123
22 H 0.058 0.942
23 H 0.051 0.949
24 H 0.034 0.966
25 H 0.265 0.735
26 H 0.407 0.593
27 H 0.116 0.884
28 H 0.107 0.893
29 H 0.064 0.936
30 H 0.071 0.929
31 H 0.061 0.939
32 H 0.067 0.933
33 H 0.072 0.928
34 H 0.068 0.932
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.867 8.044 -18.914 20.914
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.021 4.021
3 H 0.074 0.926
4 C -0.546 4.546
5 H 0.111 0.889
6 C -0.131 4.131
7 N -0.532 5.532
8 Si 0.715 3.285
9 H -0.205 1.205
10 H -0.222 1.222
11 H -0.192 1.192
12 C 0.315 3.685
13 O -0.384 6.384
14 N -0.365 5.365
15 C 0.103 3.897
16 C -0.068 4.068
17 N -0.087 5.087
18 C -0.193 4.193
19 C -0.102 4.102
20 C -0.178 4.178
21 C -0.181 4.181
22 H 0.077 0.923
23 H 0.069 0.931
24 H 0.053 0.947
25 H 0.075 0.925
26 H 0.244 0.756
27 H 0.134 0.866
28 H 0.125 0.875
29 H 0.083 0.917
30 H 0.090 0.910
31 H 0.080 0.920
32 H 0.086 0.914
33 H 0.091 0.909
34 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -3.213 5.585 -18.402 19.497
hybrid contribution -0.895 1.598 0.386 1.872
sum -4.108 7.182 -18.015 19.825
Atomic orbital electron populations
1.22146 0.97181 1.01674 0.99400 1.19308 0.93263 0.97599 0.91929
0.92635 1.20922 1.32327 1.14222 0.87178 0.88883 1.24981 0.95804
0.96603 0.95712 1.69879 1.45274 1.40124 0.97899 0.86910 0.80697
0.83743 0.77176 1.20499 1.22242 1.19154 1.21561 0.78800 0.84459
0.83647 1.90637 1.36369 1.25813 1.85589 1.45774 1.55490 1.32105
1.03148 1.16863 1.05393 0.81582 0.85855 1.27047 0.93856 0.92696
0.93245 1.81112 1.07755 1.12319 1.07515 1.23936 0.92119 1.02711
1.00527 1.22105 0.97771 0.98414 0.91952 1.21445 1.02455 0.97773
0.96139 1.21433 0.99088 0.94379 1.03152 0.92315 0.93070 0.94713
0.92495 0.75604 0.86591 0.87474 0.91741 0.90983 0.91964 0.91395
0.90947 0.91312
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.91 8.57 37.16 0.32 -2.59 16
2 C 0.00 0.02 2.23 -92.92 -0.21 -0.19 16
3 H 0.06 1.19 7.20 -51.93 -0.37 0.82 16
4 C -0.51 -14.63 8.96 -34.44 -0.31 -14.94 16
5 H 0.09 3.09 7.00 -52.49 -0.37 2.72 16
6 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16
7 N -0.89 -27.66 13.96 55.43 0.77 -26.89 16
8 Si 0.88 20.91 24.37 -169.99 -4.14 16.77 16
9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16
10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
11 H -0.27 -5.74 6.53 56.52 0.37 -5.37 16
12 C 0.53 11.25 6.98 -10.98 -0.08 11.17 16
13 O -0.51 -13.30 13.63 5.56 0.08 -13.22 16
14 N -0.71 -10.88 5.39 -50.22 -0.27 -11.15 16
15 C 0.20 2.72 2.84 -134.60 -0.38 2.34 16
16 C 0.25 4.49 11.84 -20.77 -0.25 4.25 16
17 N -0.41 -8.36 18.54 42.14 0.78 -7.58 16
18 C -0.15 -1.56 9.43 -26.73 -0.25 -1.82 16
19 C -0.10 -0.92 2.70 -154.51 -0.42 -1.34 16
20 C -0.12 -1.01 8.86 37.16 0.33 -0.68 16
21 C -0.12 -0.83 8.63 37.16 0.32 -0.51 16
22 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
23 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16
24 H 0.03 0.52 7.56 -51.93 -0.39 0.13 16
25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16
26 H 0.41 4.80 6.82 -40.82 -0.28 4.53 16
27 H 0.12 1.03 8.05 -51.93 -0.42 0.61 16
28 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16
29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
30 H 0.07 0.44 7.92 -51.93 -0.41 0.02 16
31 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16
32 H 0.07 0.41 7.81 -51.93 -0.41 0.01 16
33 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16
34 H 0.07 0.46 8.05 -51.93 -0.42 0.05 16
LS Contribution 285.01 15.07 4.30 4.30
Total: -1.00 -35.42 285.01 -4.01 -39.43
By element:
Atomic # 1 Polarization: 5.20 SS G_CDS: -4.50 Total: 0.70 kcal
Atomic # 6 Polarization: -1.34 SS G_CDS: -1.02 Total: -2.36 kcal
Atomic # 7 Polarization: -46.90 SS G_CDS: 1.28 Total: -45.62 kcal
Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal
Atomic # 14 Polarization: 20.91 SS G_CDS: -4.14 Total: 16.77 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -35.42 -4.01 -39.43 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597672868.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.318 kcal
(2) G-P(sol) polarization free energy of solvation -35.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.894 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.431 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.887 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds