Wall clock time and date at job start Mon Mar 30 2020 03:41:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09007 * 109.47056 * 2 1
4 4 C 1.50702 * 109.47106 * 119.99842 * 2 1 3
5 5 H 1.08002 * 119.99947 * 119.99989 * 4 2 1
6 6 C 1.37874 * 120.00159 * 300.00026 * 4 2 1
7 7 N 1.31512 * 120.00347 * 180.02562 * 6 4 2
8 8 Si 1.86798 * 119.99717 * 359.97438 * 6 4 2
9 9 H 1.48500 * 109.47069 * 90.00189 * 8 6 4
10 10 H 1.48503 * 109.47139 * 209.99687 * 8 6 4
11 11 H 1.48494 * 109.47501 * 329.99694 * 8 6 4
12 12 C 1.50704 * 109.47402 * 239.99945 * 2 1 3
13 13 O 1.21276 * 119.99927 * 239.99970 * 12 2 1
14 14 N 1.34775 * 119.99633 * 59.99795 * 12 2 1
15 15 C 1.46501 * 119.99891 * 180.02562 * 14 12 2
16 16 C 1.47206 * 115.55017 * 34.41666 * 15 14 12
17 17 N 5.01266 * 99.98601 * 224.30873 * 2 1 3
18 18 C 1.53000 * 117.50145 * 248.74868 * 15 14 12
19 19 C 1.52999 * 60.00076 * 252.48669 * 18 15 14
20 20 C 1.53001 * 117.49692 * 252.51245 * 19 18 15
21 21 C 1.52999 * 117.50008 * 107.49041 * 19 18 15
22 22 H 1.08995 * 109.46997 * 180.02562 * 1 2 3
23 23 H 1.09000 * 109.46644 * 300.00449 * 1 2 3
24 24 H 1.08995 * 109.46895 * 59.99936 * 1 2 3
25 25 H 0.96996 * 120.00294 * 179.97438 * 7 6 4
26 26 H 0.97000 * 120.00669 * 0.02562 * 14 12 2
27 27 H 1.09004 * 117.49333 * 359.97438 * 18 15 14
28 28 H 1.08999 * 117.50124 * 144.99544 * 18 15 14
29 29 H 1.08992 * 109.47472 * 128.62100 * 20 19 18
30 30 H 1.09006 * 109.46746 * 248.62274 * 20 19 18
31 31 H 1.08997 * 109.46983 * 8.61551 * 20 19 18
32 32 H 1.09000 * 109.47104 * 351.37022 * 21 19 18
33 33 H 1.08994 * 109.47437 * 111.38130 * 21 19 18
34 34 H 1.09003 * 109.46603 * 231.37652 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6993 -0.2393 2.4827
7 7 2.1380 -0.8589 3.5566
8 14 0.6259 1.2799 2.6540
9 1 -0.8020 0.8745 2.6992
10 1 0.9772 1.9954 3.9070
11 1 0.8492 2.1774 1.4923
12 6 2.0324 -0.7104 -1.2305
13 8 2.7297 -1.6964 -1.1191
14 7 1.7068 -0.2499 -2.4545
15 6 2.1947 -0.9408 -3.6507
16 6 2.3094 -2.4040 -3.5364
17 7 2.3992 -3.5326 -3.4484
18 6 3.2312 -0.2162 -4.5118
19 6 1.7930 -0.3679 -5.0113
20 6 1.5412 -1.3595 -6.1489
21 6 0.9121 0.8831 -5.0189
22 1 -0.3633 -1.0276 0.0005
23 1 -0.3632 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8899
25 1 1.9040 -0.5273 4.4375
26 1 1.1494 0.5389 -2.5436
27 1 3.5497 0.7749 -4.1885
28 1 3.9980 -0.8227 -4.9936
29 1 0.7319 -2.0343 -5.8703
30 1 1.2653 -0.8144 -7.0517
31 1 2.4472 -1.9361 -6.3354
32 1 1.4286 1.6943 -4.5058
33 1 0.7067 1.1766 -6.0483
34 1 -0.0267 0.6694 -4.5078
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597672868.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:53
Heat of formation + Delta-G solvation = -8.897970 kcal
Electronic energy + Delta-G solvation = -16779.936827 eV
Core-core repulsion = 14098.952681 eV
Total energy + Delta-G solvation = -2680.984146 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.40209 -39.46586 -36.99122 -35.81827 -34.50647 -33.07887 -30.10308 -28.40654
-27.12208 -25.64117 -24.10239 -21.71191 -20.43179 -19.02835 -18.64489 -17.73090
-16.65359 -16.43068 -15.84316 -15.23381 -15.05564 -14.95995 -14.67820 -14.42453
-14.12479 -13.90151 -13.82555 -13.47290 -13.41475 -13.05887 -12.84180 -12.68110
-12.53425 -12.16272 -12.09548 -11.83282 -11.44429 -11.23885 -11.07273 -10.76986
-10.46163 -9.89285 -8.26780 -6.36079 1.35011 1.39376 1.42461 1.52166
1.54131 1.78659 2.22263 2.36036 2.70026 2.84100 3.07108 3.55225
3.76436 4.00377 4.07597 4.26237 4.42067 4.59700 4.76817 4.79219
4.81702 4.86536 5.01263 5.05122 5.09294 5.11362 5.30469 5.40292
5.45825 5.49566 5.52231 6.23209 6.47623 6.64871 6.81961 7.24906
7.41918 8.91450
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036321 B = 0.006969 C = 0.006236
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 770.716436 B = 4016.624117 C = 4489.227867
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.003 4.003
3 H 0.083 0.917
4 C -0.525 4.525
5 H 0.022 0.978
6 C 0.002 3.998
7 N -0.957 5.957
8 Si 0.964 3.036
9 H -0.262 1.262
10 H -0.301 1.301
11 H -0.218 1.218
12 C 0.525 3.475
13 O -0.575 6.575
14 N -0.678 5.678
15 C 0.141 3.859
16 C 0.263 3.737
17 N -0.475 5.475
18 C -0.139 4.139
19 C -0.058 4.058
20 C -0.127 4.127
21 C -0.128 4.128
22 H 0.038 0.962
23 H 0.048 0.952
24 H 0.095 0.905
25 H 0.267 0.733
26 H 0.428 0.572
27 H 0.139 0.861
28 H 0.110 0.890
29 H 0.053 0.947
30 H 0.105 0.895
31 H 0.053 0.947
32 H 0.082 0.918
33 H 0.097 0.903
34 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.037 12.408 -21.907 25.891
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.025 4.025
3 H 0.101 0.899
4 C -0.563 4.563
5 H 0.040 0.960
6 C -0.194 4.194
7 N -0.597 5.597
8 Si 0.788 3.212
9 H -0.188 1.188
10 H -0.229 1.229
11 H -0.140 1.140
12 C 0.314 3.686
13 O -0.451 6.451
14 N -0.335 5.335
15 C 0.050 3.950
16 C -0.054 4.054
17 N -0.152 5.152
18 C -0.178 4.178
19 C -0.060 4.060
20 C -0.184 4.184
21 C -0.185 4.185
22 H 0.057 0.943
23 H 0.067 0.933
24 H 0.113 0.887
25 H 0.076 0.924
26 H 0.270 0.730
27 H 0.157 0.843
28 H 0.129 0.871
29 H 0.072 0.928
30 H 0.124 0.876
31 H 0.072 0.928
32 H 0.101 0.899
33 H 0.116 0.884
34 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -5.411 9.991 -21.485 24.305
hybrid contribution -0.126 0.144 1.237 1.251
sum -5.538 10.135 -20.249 23.311
Atomic orbital electron populations
1.22062 0.94278 1.01434 1.02168 1.19264 0.95441 0.97869 0.89886
0.89919 1.21107 1.31753 1.12774 0.90688 0.96006 1.26143 0.97526
1.01108 0.94638 1.70100 1.47733 1.43025 0.98815 0.85656 0.78380
0.78703 0.78496 1.18831 1.22941 1.14013 1.21349 0.78281 0.83679
0.85316 1.90633 1.39307 1.28502 1.86697 1.45229 1.54431 1.32054
1.01800 1.17531 1.10789 0.79467 0.87258 1.27973 0.92026 0.93889
0.91513 1.81086 1.10275 1.14491 1.09372 1.24152 0.92780 1.02846
0.98072 1.22354 0.97233 0.98539 0.87916 1.21559 1.01807 0.97852
0.97163 1.21602 0.98676 0.92934 1.05267 0.94311 0.93301 0.88655
0.92436 0.73011 0.84331 0.87128 0.92835 0.87643 0.92798 0.89942
0.88400 0.90750
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.14 8.57 71.98 0.62 -4.53 16
2 C 0.00 -0.13 2.23 -12.28 -0.03 -0.16 16
3 H 0.08 3.21 7.20 -2.38 -0.02 3.19 16
4 C -0.52 -31.51 8.96 25.60 0.23 -31.28 16
5 H 0.02 1.57 7.00 -2.91 -0.02 1.55 16
6 C 0.00 0.11 5.45 84.65 0.46 0.57 16
7 N -0.96 -62.24 13.96 21.45 0.30 -61.94 16
8 Si 0.96 41.98 24.37 68.60 1.67 43.66 16
9 H -0.26 -10.75 6.87 99.48 0.68 -10.07 16
10 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16
11 H -0.22 -7.76 6.53 99.48 0.65 -7.11 16
12 C 0.52 22.29 6.98 87.66 0.61 22.91 16
13 O -0.57 -31.41 13.63 -3.02 -0.04 -31.45 16
14 N -0.68 -18.96 5.39 -431.20 -2.32 -21.28 16
15 C 0.14 3.65 2.84 1.80 0.01 3.66 16
16 C 0.26 9.65 11.84 89.45 1.06 10.71 16
17 N -0.47 -20.40 18.54 20.00 0.37 -20.03 16
18 C -0.14 -2.37 9.43 30.59 0.29 -2.08 16
19 C -0.06 -0.83 2.70 -52.18 -0.14 -0.97 16
20 C -0.13 -1.70 8.86 71.98 0.64 -1.06 16
21 C -0.13 -0.94 8.63 71.98 0.62 -0.32 16
22 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16
23 H 0.05 1.80 3.27 -2.39 -0.01 1.79 16
24 H 0.09 2.28 7.56 -2.39 -0.02 2.27 16
25 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16
26 H 0.43 7.91 6.82 -92.71 -0.63 7.28 16
27 H 0.14 1.79 8.05 -2.39 -0.02 1.77 16
28 H 0.11 1.85 8.05 -2.39 -0.02 1.83 16
29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.10 0.76 7.92 -2.38 -0.02 0.74 16
31 H 0.05 0.82 7.90 -2.39 -0.02 0.81 16
32 H 0.08 0.43 7.81 -2.39 -0.02 0.41 16
33 H 0.10 0.33 7.92 -2.39 -0.02 0.31 16
34 H 0.07 0.54 8.05 -2.39 -0.02 0.53 16
Total: -1.00 -88.08 285.01 4.74 -83.34
By element:
Atomic # 1 Polarization: 9.87 SS G_CDS: 0.40 Total: 10.27 kcal
Atomic # 6 Polarization: -6.92 SS G_CDS: 4.36 Total: -2.56 kcal
Atomic # 7 Polarization: -101.60 SS G_CDS: -1.65 Total: -103.25 kcal
Atomic # 8 Polarization: -31.41 SS G_CDS: -0.04 Total: -31.45 kcal
Atomic # 14 Polarization: 41.98 SS G_CDS: 1.67 Total: 43.66 kcal
Total: -88.08 4.74 -83.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597672868.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.441 kcal
(2) G-P(sol) polarization free energy of solvation -88.080 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.639 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.339 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.898 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds