Wall clock time and date at job start Mon Mar 30 2020 03:42:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3
5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1
6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1
7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2
8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.46954 * 60.00173 * 8 6 4
10 10 H 1.48503 * 109.47431 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47490 * 300.00258 * 8 6 4
12 12 C 1.50699 * 109.46866 * 119.99952 * 2 1 3
13 13 O 1.21278 * 120.00240 * 120.00385 * 12 2 1
14 14 N 1.34780 * 120.00249 * 300.00184 * 12 2 1
15 15 C 1.46500 * 120.00188 * 180.02562 * 14 12 2
16 16 C 1.53008 * 109.46913 * 179.97438 * 15 14 12
17 17 C 1.47195 * 112.84982 * 48.80198 * 16 15 14
18 18 N 5.38728 * 63.48034 * 86.79708 * 2 1 3
19 19 C 1.53778 * 113.61222 * 277.49516 * 16 15 14
20 20 C 1.53775 * 87.08095 * 220.01970 * 19 16 15
21 21 C 1.53774 * 113.60953 * 180.02562 * 16 15 14
22 22 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
23 23 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
25 25 H 0.96999 * 120.00239 * 180.02562 * 7 6 4
26 26 H 0.96998 * 119.99818 * 359.97438 * 14 12 2
27 27 H 1.09000 * 109.47175 * 299.99877 * 15 14 12
28 28 H 1.09002 * 109.47092 * 59.99835 * 15 14 12
29 29 H 1.09005 * 113.62066 * 334.56906 * 19 16 15
30 30 H 1.09005 * 113.61642 * 105.47148 * 19 16 15
31 31 H 1.08996 * 113.61711 * 270.88375 * 20 19 16
32 32 H 1.09005 * 113.61511 * 139.98074 * 20 19 16
33 33 H 1.08999 * 113.61412 * 254.52291 * 21 16 15
34 34 H 1.08999 * 113.62181 * 25.42928 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9436 0.8302 -2.6034
8 14 2.3226 -1.1196 -4.0078
9 1 1.8281 -2.5198 -4.0080
10 1 1.8280 -0.4193 -5.2204
11 1 3.8076 -1.1191 -4.0077
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6964 1.1193
14 7 1.7067 -0.2500 2.4546
15 6 2.1954 -0.9403 3.6508
16 6 1.6857 -0.2187 4.9001
17 6 0.2407 0.0571 4.8513
18 7 -0.8754 0.2693 4.8129
19 6 2.5345 1.0009 5.2963
20 6 2.3469 0.5582 6.7569
21 6 2.1456 -0.8669 6.2165
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.7090 1.1614 -3.4844
26 1 1.1493 0.5389 2.5436
27 1 1.8325 -1.9681 3.6510
28 1 3.2854 -0.9398 3.6507
29 1 3.5673 0.9447 4.9522
30 1 2.0618 1.9556 5.0652
31 1 1.4578 0.9761 7.2291
32 1 3.2437 0.6713 7.3661
33 1 1.3588 -1.4208 6.7286
34 1 3.0720 -1.4337 6.1239
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597784527.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:06
Heat of formation + Delta-G solvation = -0.075467 kcal
Electronic energy + Delta-G solvation = -16441.717273 eV
Core-core repulsion = 13761.115699 eV
Total energy + Delta-G solvation = -2680.601574 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.24203 -38.46926 -35.86445 -33.90684 -33.69908 -30.60362 -28.36385 -26.07878
-25.11113 -24.05913 -22.21603 -21.22879 -19.35721 -17.08154 -16.35490 -16.15745
-15.28819 -15.15286 -14.63542 -14.52144 -14.03237 -13.87768 -13.17007 -12.93807
-12.91076 -12.58137 -12.45623 -12.05426 -11.75653 -11.43956 -11.13429 -10.98627
-10.79470 -10.68485 -10.66309 -10.54884 -10.23090 -9.94001 -8.96680 -8.62201
-8.50475 -8.30820 -6.00710 -4.04144 2.55491 2.65106 3.37898 3.40364
3.45383 3.59399 3.72414 3.81588 4.20863 4.35596 4.48936 4.53836
4.57614 5.08232 5.32280 5.39237 5.41819 5.53437 5.61141 5.65558
5.76652 5.86087 5.98667 6.25611 6.64676 6.85408 6.93684 7.01506
7.45234 7.49527 7.77407 7.99497 8.14406 8.42927 9.04306 9.21586
9.61216 11.06879
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.045495 B = 0.005434 C = 0.005137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.307859 B = 5151.253581 C = 5448.816001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C 0.029 3.971
3 H 0.053 0.947
4 C -0.501 4.501
5 H 0.074 0.926
6 C 0.058 3.942
7 N -0.897 5.897
8 Si 0.901 3.099
9 H -0.277 1.277
10 H -0.288 1.288
11 H -0.276 1.276
12 C 0.522 3.478
13 O -0.544 6.544
14 N -0.749 5.749
15 C 0.141 3.859
16 C -0.010 4.010
17 C 0.227 3.773
18 N -0.420 5.420
19 C -0.118 4.118
20 C -0.144 4.144
21 C -0.114 4.114
22 H 0.010 0.990
23 H 0.093 0.907
24 H 0.030 0.970
25 H 0.261 0.739
26 H 0.395 0.605
27 H 0.070 0.930
28 H 0.083 0.917
29 H 0.106 0.894
30 H 0.077 0.923
31 H 0.081 0.919
32 H 0.079 0.921
33 H 0.077 0.923
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.275 0.891 17.152 17.485
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.008 3.992
3 H 0.070 0.930
4 C -0.539 4.539
5 H 0.092 0.908
6 C -0.143 4.143
7 N -0.536 5.536
8 Si 0.729 3.271
9 H -0.202 1.202
10 H -0.214 1.214
11 H -0.202 1.202
12 C 0.311 3.689
13 O -0.420 6.420
14 N -0.404 5.404
15 C 0.015 3.985
16 C -0.014 4.014
17 C -0.091 4.091
18 N -0.094 5.094
19 C -0.157 4.157
20 C -0.182 4.182
21 C -0.153 4.153
22 H 0.029 0.971
23 H 0.112 0.888
24 H 0.050 0.950
25 H 0.071 0.929
26 H 0.228 0.772
27 H 0.088 0.912
28 H 0.101 0.899
29 H 0.124 0.876
30 H 0.096 0.904
31 H 0.099 0.901
32 H 0.098 0.902
33 H 0.096 0.904
34 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 2.004 0.591 16.844 16.973
hybrid contribution 0.285 -0.110 -0.791 0.848
sum 2.289 0.481 16.053 16.222
Atomic orbital electron populations
1.21740 0.96600 0.99791 1.00861 1.18873 0.94073 0.96874 0.89360
0.92973 1.21096 1.31046 1.12827 0.88977 0.90799 1.24959 0.95119
0.95067 0.99127 1.69867 1.37061 1.23072 1.23628 0.86499 0.79254
0.79703 0.81622 1.20217 1.21409 1.20177 1.21975 0.78316 0.84227
0.84335 1.90529 1.37955 1.26780 1.86736 1.46329 1.55742 1.32764
1.05599 1.21192 0.99524 0.95995 0.81784 1.19552 0.83230 1.00532
0.98094 1.28216 0.93940 0.93568 0.93384 1.81282 1.12056 1.08168
1.07943 1.23076 1.00429 0.96393 0.95757 1.22918 1.02682 0.95957
0.96598 1.22966 1.02599 0.97332 0.92363 0.97145 0.88813 0.95034
0.92918 0.77174 0.91187 0.89891 0.87609 0.90411 0.90080 0.90219
0.90435 0.87597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.15 8.87 37.16 0.33 -2.82 16
2 C 0.03 0.74 2.64 -92.92 -0.25 0.49 16
3 H 0.05 1.35 8.14 -51.93 -0.42 0.93 16
4 C -0.50 -14.29 8.37 -34.44 -0.29 -14.58 16
5 H 0.07 2.21 6.75 -52.49 -0.35 1.85 16
6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16
7 N -0.90 -25.45 11.32 55.43 0.63 -24.83 16
8 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16
9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16
12 C 0.52 11.76 7.15 -10.98 -0.08 11.68 16
13 O -0.54 -13.88 15.46 5.56 0.09 -13.79 16
14 N -0.75 -12.76 5.20 -60.29 -0.31 -13.07 16
15 C 0.14 1.83 5.13 -4.04 -0.02 1.81 16
16 C -0.01 -0.10 1.03 -156.49 -0.16 -0.26 16
17 C 0.23 2.92 13.03 -20.74 -0.27 2.65 16
18 N -0.42 -6.52 18.54 42.18 0.78 -5.74 16
19 C -0.12 -0.91 7.20 -25.92 -0.19 -1.10 16
20 C -0.14 -0.91 7.79 -25.94 -0.20 -1.11 16
21 C -0.11 -0.79 7.21 -25.94 -0.19 -0.97 16
22 H 0.01 0.20 7.56 -51.93 -0.39 -0.19 16
23 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16
24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
25 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16
26 H 0.39 6.28 7.11 -40.82 -0.29 5.99 16
27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16
28 H 0.08 1.01 7.94 -51.93 -0.41 0.60 16
29 H 0.11 0.72 7.96 -51.93 -0.41 0.31 16
30 H 0.08 0.63 8.09 -51.93 -0.42 0.21 16
31 H 0.08 0.55 8.13 -51.93 -0.42 0.13 16
32 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16
33 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16
34 H 0.11 0.57 8.10 -51.93 -0.42 0.15 16
LS Contribution 291.77 15.07 4.40 4.40
Total: -1.00 -32.51 291.77 -5.53 -38.04
By element:
Atomic # 1 Polarization: 5.44 SS G_CDS: -4.69 Total: 0.75 kcal
Atomic # 6 Polarization: -1.28 SS G_CDS: -1.40 Total: -2.68 kcal
Atomic # 7 Polarization: -44.73 SS G_CDS: 1.10 Total: -43.64 kcal
Atomic # 8 Polarization: -13.88 SS G_CDS: 0.09 Total: -13.79 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -32.51 -5.53 -38.04 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597784527.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.965 kcal
(2) G-P(sol) polarization free energy of solvation -32.508 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.457 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.533 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.040 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.075 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds