Wall clock time and date at job start Mon Mar 30 2020 03:42:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.09000 * 109.47050 * 2 1
4 4 C 1.50697 * 109.47239 * 239.99664 * 2 1 3
5 5 H 1.07994 * 120.00496 * 239.99942 * 4 2 1
6 6 C 1.37878 * 119.99687 * 60.00100 * 4 2 1
7 7 N 1.31518 * 120.00216 * 0.02562 * 6 4 2
8 8 Si 1.86797 * 120.00016 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.46954 * 60.00173 * 8 6 4
10 10 H 1.48503 * 109.47431 * 180.02562 * 8 6 4
11 11 H 1.48506 * 109.47490 * 300.00258 * 8 6 4
12 12 C 1.50699 * 109.46866 * 119.99952 * 2 1 3
13 13 O 1.21278 * 120.00240 * 120.00385 * 12 2 1
14 14 N 1.34780 * 120.00249 * 300.00184 * 12 2 1
15 15 C 1.46500 * 120.00188 * 180.02562 * 14 12 2
16 16 C 1.53008 * 109.46913 * 179.97438 * 15 14 12
17 17 C 1.47195 * 112.84982 * 48.80198 * 16 15 14
18 18 N 5.38728 * 63.48034 * 86.79708 * 2 1 3
19 19 C 1.53778 * 113.61222 * 277.49516 * 16 15 14
20 20 C 1.53775 * 87.08095 * 220.01970 * 19 16 15
21 21 C 1.53774 * 113.60953 * 180.02562 * 16 15 14
22 22 H 1.09001 * 109.46801 * 300.00112 * 1 2 3
23 23 H 1.09001 * 109.46998 * 59.99708 * 1 2 3
24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3
25 25 H 0.96999 * 120.00239 * 180.02562 * 7 6 4
26 26 H 0.96998 * 119.99818 * 359.97438 * 14 12 2
27 27 H 1.09000 * 109.47175 * 299.99877 * 15 14 12
28 28 H 1.09002 * 109.47092 * 59.99835 * 15 14 12
29 29 H 1.09005 * 113.62066 * 334.56906 * 19 16 15
30 30 H 1.09005 * 113.61642 * 105.47148 * 19 16 15
31 31 H 1.08996 * 113.61711 * 270.88375 * 20 19 16
32 32 H 1.09005 * 113.61511 * 139.98074 * 20 19 16
33 33 H 1.08999 * 113.61412 * 254.52291 * 21 16 15
34 34 H 1.08999 * 113.62181 * 25.42928 * 21 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7105 -1.2304
5 1 2.6533 -1.5885 -1.1313
6 6 1.6993 -0.2394 -2.4827
7 7 0.9436 0.8302 -2.6034
8 14 2.3226 -1.1196 -4.0078
9 1 1.8281 -2.5198 -4.0080
10 1 1.8280 -0.4193 -5.2204
11 1 3.8076 -1.1191 -4.0077
12 6 2.0323 -0.7104 1.2305
13 8 2.7296 -1.6964 1.1193
14 7 1.7067 -0.2500 2.4546
15 6 2.1954 -0.9403 3.6508
16 6 1.6857 -0.2187 4.9001
17 6 0.2407 0.0571 4.8513
18 7 -0.8754 0.2693 4.8129
19 6 2.5345 1.0009 5.2963
20 6 2.3469 0.5582 6.7569
21 6 2.1456 -0.8669 6.2165
22 1 -0.3633 0.5139 0.8900
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 0.7090 1.1614 -3.4844
26 1 1.1493 0.5389 2.5436
27 1 1.8325 -1.9681 3.6510
28 1 3.2854 -0.9398 3.6507
29 1 3.5673 0.9447 4.9522
30 1 2.0618 1.9556 5.0652
31 1 1.4578 0.9761 7.2291
32 1 3.2437 0.6713 7.3661
33 1 1.3588 -1.4208 6.7286
34 1 3.0720 -1.4337 6.1239
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000597784527.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:05
Heat of formation + Delta-G solvation = -21.486089 kcal
Electronic energy + Delta-G solvation = -16442.645707 eV
Core-core repulsion = 13761.115699 eV
Total energy + Delta-G solvation = -2681.530008 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-41.20819 -40.02247 -36.91240 -35.79134 -35.34376 -32.57856 -29.50812 -27.22112
-26.65702 -25.28206 -23.85577 -21.99822 -21.01307 -18.50395 -18.08963 -17.44611
-16.79104 -16.45573 -16.14118 -15.73445 -15.30182 -15.02759 -14.65551 -14.55236
-14.11693 -13.92157 -13.46867 -13.24929 -13.09038 -12.97787 -12.71517 -12.62824
-12.53558 -12.21478 -12.00493 -11.68335 -11.42732 -11.27670 -11.06347 -10.60226
-10.30213 -9.98384 -8.14592 -6.25540 1.42458 1.44208 1.52544 1.57383
1.62180 1.92611 2.33390 2.51318 2.75179 3.15178 3.53499 3.61866
3.70149 3.92257 4.32165 4.47430 4.61960 4.68844 4.77998 4.87529
4.88817 4.91277 4.97669 5.09511 5.13043 5.19253 5.45635 5.47403
5.55565 5.72155 5.90092 6.18203 6.44833 6.66848 6.84693 7.39538
7.51614 8.91273
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.045495 B = 0.005434 C = 0.005137
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 615.307859 B = 5151.253581 C = 5448.816001
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C 0.022 3.978
3 H 0.042 0.958
4 C -0.528 4.528
5 H 0.053 0.947
6 C 0.017 3.983
7 N -0.914 5.914
8 Si 0.958 3.042
9 H -0.277 1.277
10 H -0.277 1.277
11 H -0.273 1.273
12 C 0.525 3.475
13 O -0.579 6.579
14 N -0.732 5.732
15 C 0.137 3.863
16 C -0.015 4.015
17 C 0.245 3.755
18 N -0.471 5.471
19 C -0.116 4.116
20 C -0.135 4.135
21 C -0.103 4.103
22 H 0.038 0.962
23 H 0.071 0.929
24 H 0.021 0.979
25 H 0.264 0.736
26 H 0.401 0.599
27 H 0.063 0.937
28 H 0.100 0.900
29 H 0.121 0.879
30 H 0.072 0.928
31 H 0.075 0.925
32 H 0.103 0.897
33 H 0.079 0.921
34 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.283 0.909 18.480 18.992
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.176 4.176
2 C 0.001 3.999
3 H 0.060 0.940
4 C -0.566 4.566
5 H 0.071 0.929
6 C -0.182 4.182
7 N -0.553 5.553
8 Si 0.784 3.216
9 H -0.202 1.202
10 H -0.202 1.202
11 H -0.198 1.198
12 C 0.314 3.686
13 O -0.458 6.458
14 N -0.385 5.385
15 C 0.013 3.987
16 C -0.019 4.019
17 C -0.072 4.072
18 N -0.147 5.147
19 C -0.154 4.154
20 C -0.172 4.172
21 C -0.142 4.142
22 H 0.057 0.943
23 H 0.090 0.910
24 H 0.040 0.960
25 H 0.073 0.927
26 H 0.236 0.764
27 H 0.082 0.918
28 H 0.118 0.882
29 H 0.139 0.861
30 H 0.091 0.909
31 H 0.093 0.907
32 H 0.121 0.879
33 H 0.097 0.903
34 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges 2.994 0.637 18.218 18.473
hybrid contribution -0.028 -0.091 -1.155 1.159
sum 2.965 0.546 17.063 17.327
Atomic orbital electron populations
1.21542 0.95855 0.99113 1.01116 1.18811 0.94668 0.96231 0.90216
0.94008 1.21261 1.31605 1.12797 0.90923 0.92884 1.25650 0.95178
0.95737 1.01619 1.69956 1.37283 1.23705 1.24359 0.85609 0.78823
0.78600 0.78595 1.20209 1.20173 1.19793 1.21376 0.78215 0.83676
0.85359 1.90507 1.39678 1.28167 1.87438 1.46084 1.54537 1.32503
1.05359 1.21471 1.00552 0.95642 0.81001 1.19812 0.81622 1.02520
0.97988 1.28785 0.94434 0.92055 0.91908 1.81299 1.13713 1.10078
1.09577 1.23176 1.00541 0.94947 0.96737 1.22878 1.03521 0.94953
0.95848 1.23065 1.03474 0.97987 0.89677 0.94309 0.91025 0.96017
0.92651 0.76405 0.91845 0.88188 0.86056 0.90890 0.90668 0.87895
0.90256 0.85316
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.68 8.87 71.98 0.64 -5.05 16
2 C 0.02 1.12 2.64 -12.29 -0.03 1.08 16
3 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16
4 C -0.53 -30.62 8.37 25.60 0.21 -30.41 16
5 H 0.05 3.25 6.75 -2.91 -0.02 3.23 16
6 C 0.02 0.96 5.30 84.65 0.45 1.41 16
7 N -0.91 -52.07 11.32 21.45 0.24 -51.83 16
8 Si 0.96 45.05 29.54 68.60 2.03 47.08 16
9 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16
10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
11 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16
12 C 0.52 23.66 7.15 87.66 0.63 24.28 16
13 O -0.58 -29.69 15.46 -3.02 -0.05 -29.73 16
14 N -0.73 -24.15 5.20 -463.04 -2.41 -26.55 16
15 C 0.14 3.32 5.13 86.38 0.44 3.76 16
16 C -0.02 -0.27 1.03 -53.46 -0.05 -0.32 16
17 C 0.25 6.01 13.03 89.43 1.17 7.18 16
18 N -0.47 -14.40 18.54 20.01 0.37 -14.03 16
19 C -0.12 -1.44 7.20 31.12 0.22 -1.22 16
20 C -0.13 -1.23 7.79 31.11 0.24 -0.99 16
21 C -0.10 -1.08 7.21 31.11 0.22 -0.85 16
22 H 0.04 1.58 7.56 -2.39 -0.02 1.57 16
23 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16
24 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16
25 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16
26 H 0.40 12.30 7.11 -92.71 -0.66 11.64 16
27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.10 2.16 7.94 -2.39 -0.02 2.14 16
29 H 0.12 1.20 7.96 -2.38 -0.02 1.18 16
30 H 0.07 1.01 8.09 -2.38 -0.02 0.99 16
31 H 0.07 0.81 8.13 -2.39 -0.02 0.79 16
32 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16
33 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16
34 H 0.13 0.82 8.10 -2.39 -0.02 0.80 16
Total: -1.00 -70.93 291.77 4.77 -66.16
By element:
Atomic # 1 Polarization: 9.58 SS G_CDS: 0.45 Total: 10.03 kcal
Atomic # 6 Polarization: -5.26 SS G_CDS: 4.14 Total: -1.12 kcal
Atomic # 7 Polarization: -90.62 SS G_CDS: -1.79 Total: -92.41 kcal
Atomic # 8 Polarization: -29.69 SS G_CDS: -0.05 Total: -29.73 kcal
Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal
Total: -70.93 4.77 -66.16 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597784527.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.671 kcal
(2) G-P(sol) polarization free energy of solvation -70.932 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.260 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.774 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.157 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.486 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds