Wall clock time and date at job start Mon Mar 30 2020 03:18:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.47206 * 109.47080 * 120.00097 * 2 1 3
5 5 N 2.60798 * 109.47138 * 119.99971 * 2 1 3
6 6 C 1.53002 * 109.47415 * 240.00127 * 2 1 3
7 7 C 1.50696 * 109.47306 * 59.99566 * 6 2 1
8 8 O 1.21279 * 119.99693 * 0.02562 * 7 6 2
9 9 N 1.34777 * 120.00144 * 179.97438 * 7 6 2
10 10 C 1.47067 * 136.05761 * 359.63845 * 9 7 6
11 11 C 1.53756 * 87.88796 * 152.95785 * 10 9 7
12 12 C 1.50695 * 114.26466 * 139.78950 * 11 10 9
13 13 H 1.08001 * 120.00165 * 266.47539 * 12 11 10
14 14 C 1.37878 * 120.00231 * 86.47786 * 12 11 10
15 15 N 1.31517 * 119.99463 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 120.00589 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.46993 * 89.99562 * 16 14 12
18 18 H 1.48501 * 109.47389 * 210.00113 * 16 14 12
19 19 H 1.48510 * 109.46717 * 330.00084 * 16 14 12
20 20 C 1.47067 * 136.05475 * 180.02562 * 9 7 6
21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3
22 22 H 1.09002 * 109.47045 * 59.99942 * 1 2 3
23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1
25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1
26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1
27 27 H 1.08996 * 109.47407 * 180.02562 * 6 2 1
28 28 H 1.09004 * 109.46733 * 299.99664 * 6 2 1
29 29 H 1.08995 * 113.46483 * 267.69097 * 10 9 7
30 30 H 1.09001 * 113.46751 * 38.12481 * 10 9 7
31 31 H 1.08993 * 114.39365 * 272.67629 * 11 10 9
32 32 H 0.97001 * 119.99810 * 180.02562 * 15 14 12
33 33 H 1.08998 * 113.46736 * 321.86652 * 20 9 7
34 34 H 1.09004 * 113.46495 * 92.25557 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0206 -0.6940 1.2019
5 7 2.3993 -1.2294 2.1294
6 6 2.0401 -0.7212 -1.2493
7 6 1.5377 -0.0109 -2.4797
8 8 0.8407 0.9754 -2.3684
9 7 1.8638 -0.4711 -3.7038
10 6 2.6606 -1.5855 -4.2385
11 6 1.7698 -1.5466 -5.4911
12 6 2.5135 -1.7469 -6.7864
13 1 2.8637 -0.8919 -7.3458
14 6 2.7468 -3.0215 -7.2576
15 7 2.3207 -4.0625 -6.5762
16 14 3.6680 -3.2697 -8.8635
17 1 5.1236 -3.3727 -8.5883
18 1 3.1980 -4.5182 -9.5160
19 1 3.4147 -2.1155 -9.7629
20 6 1.5849 -0.0756 -5.0926
21 1 -0.3634 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9563 0.8900
27 1 3.1300 -0.7216 -1.2490
28 1 1.6767 -1.7489 -1.2492
29 1 3.6993 -1.3207 -4.4362
30 1 2.5620 -2.5054 -3.6622
31 1 0.8632 -2.1472 -5.4176
32 1 2.4851 -4.9593 -6.9074
33 1 0.5696 0.2909 -5.2440
34 1 2.3398 0.5876 -5.5150
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598022623.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:38
Heat of formation + Delta-G solvation = 18.300046 kcal
Electronic energy + Delta-G solvation = -16414.330850 eV
Core-core repulsion = 13734.526098 eV
Total energy + Delta-G solvation = -2679.804752 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.01952 -38.25324 -36.75193 -34.53043 -32.75964 -30.06633 -27.63892 -27.33215
-25.05408 -24.95904 -22.90478 -20.42492 -18.14711 -17.28434 -16.77696 -15.84072
-15.38529 -15.20211 -14.63934 -14.40881 -14.25808 -13.69980 -13.40914 -12.83276
-12.58571 -12.35548 -12.13086 -11.91476 -11.64490 -11.62118 -11.59069 -11.13743
-11.01022 -10.98910 -10.92195 -10.80053 -10.38546 -9.60720 -9.26973 -8.99790
-8.63330 -7.94765 -6.23571 -4.29422 2.65647 2.73345 3.01446 3.20580
3.28771 3.30714 3.40852 3.95872 4.29496 4.62968 4.79161 4.90599
5.03700 5.11455 5.53975 5.57304 5.67935 5.83479 5.90412 5.92122
5.98109 6.08030 6.17775 6.35393 6.38163 6.39963 6.51223 6.57597
6.73267 7.49376 7.49459 7.74201 8.11847 8.42455 8.63061 8.74983
9.38040 10.86122
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.043966 B = 0.005093 C = 0.004813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 636.695829 B = 5496.135987 C = 5816.113992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.053 3.947
3 C -0.152 4.152
4 C 0.221 3.779
5 N -0.443 5.443
6 C -0.127 4.127
7 C 0.539 3.461
8 O -0.556 6.556
9 N -0.640 5.640
10 C 0.095 3.905
11 C 0.035 3.965
12 C -0.519 4.519
13 H 0.064 0.936
14 C 0.069 3.931
15 N -0.886 5.886
16 Si 0.895 3.105
17 H -0.279 1.279
18 H -0.285 1.285
19 H -0.272 1.272
20 C 0.101 3.899
21 H 0.058 0.942
22 H 0.107 0.893
23 H 0.056 0.944
24 H 0.055 0.945
25 H 0.107 0.893
26 H 0.059 0.941
27 H 0.097 0.903
28 H 0.099 0.901
29 H 0.076 0.924
30 H 0.061 0.939
31 H 0.069 0.931
32 H 0.264 0.736
33 H 0.058 0.942
34 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.768 6.304 7.436 9.779
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C 0.049 3.951
3 C -0.210 4.210
4 C -0.098 4.098
5 N -0.117 5.117
6 C -0.168 4.168
7 C 0.329 3.671
8 O -0.438 6.438
9 N -0.373 5.373
10 C -0.028 4.028
11 C 0.016 3.984
12 C -0.557 4.557
13 H 0.082 0.918
14 C -0.135 4.135
15 N -0.522 5.522
16 Si 0.723 3.277
17 H -0.205 1.205
18 H -0.211 1.211
19 H -0.196 1.196
20 C -0.021 4.021
21 H 0.077 0.923
22 H 0.126 0.874
23 H 0.075 0.925
24 H 0.074 0.926
25 H 0.125 0.875
26 H 0.078 0.922
27 H 0.116 0.884
28 H 0.118 0.882
29 H 0.094 0.906
30 H 0.079 0.921
31 H 0.087 0.913
32 H 0.074 0.926
33 H 0.077 0.923
34 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -0.610 5.857 9.116 10.853
hybrid contribution 0.613 -0.264 -1.025 1.223
sum 0.004 5.593 8.091 9.836
Atomic orbital electron populations
1.22158 0.90841 1.02956 1.05095 1.17975 0.97543 0.94767 0.84811
1.22153 1.00896 0.92834 1.05095 1.29285 0.92881 0.93149 0.94439
1.81175 1.09333 1.09513 1.11689 1.21618 1.02956 1.00947 0.91321
1.19659 0.80756 0.83766 0.82969 1.90510 1.40291 1.27226 1.85786
1.50032 1.50528 1.32088 1.04652 1.23729 0.96684 0.86806 0.95563
1.20392 0.96085 0.89420 0.92547 1.20906 1.36541 0.92471 1.05748
0.91801 1.25026 0.95229 0.96024 0.97193 1.69945 1.45102 0.98458
1.38730 0.86538 0.79958 0.77840 0.83385 1.20504 1.21119 1.19647
1.23360 0.99911 1.01094 0.77772 0.92257 0.87417 0.92461 0.92593
0.87468 0.92238 0.88439 0.88238 0.90619 0.92088 0.91278 0.92580
0.92300 0.90803
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.76 8.13 37.16 0.30 -1.46 16
2 C 0.05 0.63 0.69 -157.29 -0.11 0.53 16
3 C -0.15 -1.71 8.13 37.16 0.30 -1.40 16
4 C 0.22 2.91 13.86 -20.76 -0.29 2.63 16
5 N -0.44 -6.77 18.54 42.15 0.78 -5.99 16
6 C -0.13 -1.65 4.55 -27.88 -0.13 -1.78 16
7 C 0.54 8.77 7.49 -10.99 -0.08 8.69 16
8 O -0.56 -9.77 12.12 5.56 0.07 -9.71 16
9 N -0.64 -11.56 3.69 -185.03 -0.68 -12.25 16
10 C 0.09 1.82 8.00 -8.36 -0.07 1.76 16
11 C 0.03 0.76 3.79 -91.11 -0.35 0.42 16
12 C -0.52 -12.59 8.83 -34.44 -0.30 -12.90 16
13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16
14 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16
15 N -0.89 -23.35 13.26 55.43 0.74 -22.61 16
16 Si 0.90 19.44 29.54 -169.99 -5.02 14.42 16
17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16
18 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16
19 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16
20 C 0.10 1.92 8.17 -8.49 -0.07 1.85 16
21 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
22 H 0.11 1.43 5.51 -51.93 -0.29 1.15 16
23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
25 H 0.11 1.39 5.51 -51.93 -0.29 1.10 16
26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
27 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16
28 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16
29 H 0.08 1.44 8.10 -51.93 -0.42 1.02 16
30 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16
31 H 0.07 1.67 8.11 -51.93 -0.42 1.25 16
32 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16
33 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16
34 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16
LS Contribution 292.17 15.07 4.40 4.40
Total: -1.00 -26.74 292.17 -5.36 -32.11
By element:
Atomic # 1 Polarization: 4.44 SS G_CDS: -4.76 Total: -0.32 kcal
Atomic # 6 Polarization: 0.84 SS G_CDS: -0.88 Total: -0.05 kcal
Atomic # 7 Polarization: -41.68 SS G_CDS: 0.83 Total: -40.85 kcal
Atomic # 8 Polarization: -9.77 SS G_CDS: 0.07 Total: -9.71 kcal
Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -26.74 -5.36 -32.11 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598022623.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.407 kcal
(2) G-P(sol) polarization free energy of solvation -26.744 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.663 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.363 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.107 kcal
(6) G-S(sol) free energy of system = (1) + (5) 18.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds