Wall clock time and date at job start Mon Mar 30 2020 03:18:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52997 * 109.47232 * 2 1
4 4 C 1.47206 * 109.47080 * 120.00097 * 2 1 3
5 5 N 2.60798 * 109.47138 * 119.99971 * 2 1 3
6 6 C 1.53002 * 109.47415 * 240.00127 * 2 1 3
7 7 C 1.50696 * 109.47306 * 59.99566 * 6 2 1
8 8 O 1.21279 * 119.99693 * 0.02562 * 7 6 2
9 9 N 1.34777 * 120.00144 * 179.97438 * 7 6 2
10 10 C 1.47067 * 136.05761 * 359.63845 * 9 7 6
11 11 C 1.53756 * 87.88796 * 152.95785 * 10 9 7
12 12 C 1.50695 * 114.26466 * 139.78950 * 11 10 9
13 13 H 1.08001 * 120.00165 * 266.47539 * 12 11 10
14 14 C 1.37878 * 120.00231 * 86.47786 * 12 11 10
15 15 N 1.31517 * 119.99463 * 359.97438 * 14 12 11
16 16 Si 1.86798 * 120.00589 * 179.97438 * 14 12 11
17 17 H 1.48498 * 109.46993 * 89.99562 * 16 14 12
18 18 H 1.48501 * 109.47389 * 210.00113 * 16 14 12
19 19 H 1.48510 * 109.46717 * 330.00084 * 16 14 12
20 20 C 1.47067 * 136.05475 * 180.02562 * 9 7 6
21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3
22 22 H 1.09002 * 109.47045 * 59.99942 * 1 2 3
23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1
25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1
26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1
27 27 H 1.08996 * 109.47407 * 180.02562 * 6 2 1
28 28 H 1.09004 * 109.46733 * 299.99664 * 6 2 1
29 29 H 1.08995 * 113.46483 * 267.69097 * 10 9 7
30 30 H 1.09001 * 113.46751 * 38.12481 * 10 9 7
31 31 H 1.08993 * 114.39365 * 272.67629 * 11 10 9
32 32 H 0.97001 * 119.99810 * 180.02562 * 15 14 12
33 33 H 1.08998 * 113.46736 * 321.86652 * 20 9 7
34 34 H 1.09004 * 113.46495 * 92.25557 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0206 -0.6940 1.2019
5 7 2.3993 -1.2294 2.1294
6 6 2.0401 -0.7212 -1.2493
7 6 1.5377 -0.0109 -2.4797
8 8 0.8407 0.9754 -2.3684
9 7 1.8638 -0.4711 -3.7038
10 6 2.6606 -1.5855 -4.2385
11 6 1.7698 -1.5466 -5.4911
12 6 2.5135 -1.7469 -6.7864
13 1 2.8637 -0.8919 -7.3458
14 6 2.7468 -3.0215 -7.2576
15 7 2.3207 -4.0625 -6.5762
16 14 3.6680 -3.2697 -8.8635
17 1 5.1236 -3.3727 -8.5883
18 1 3.1980 -4.5182 -9.5160
19 1 3.4147 -2.1155 -9.7629
20 6 1.5849 -0.0756 -5.0926
21 1 -0.3634 0.5138 0.8900
22 1 -0.3633 0.5139 -0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 3.1300 1.4425 0.0005
25 1 1.6767 1.9563 -0.8900
26 1 1.6767 1.9563 0.8900
27 1 3.1300 -0.7216 -1.2490
28 1 1.6767 -1.7489 -1.2492
29 1 3.6993 -1.3207 -4.4362
30 1 2.5620 -2.5054 -3.6622
31 1 0.8632 -2.1472 -5.4176
32 1 2.4851 -4.9593 -6.9074
33 1 0.5696 0.2909 -5.2440
34 1 2.3398 0.5876 -5.5150
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598022623.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:18:37
Heat of formation + Delta-G solvation = 3.851300 kcal
Electronic energy + Delta-G solvation = -16414.957395 eV
Core-core repulsion = 13734.526098 eV
Total energy + Delta-G solvation = -2680.431296 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.35431 -39.59951 -38.01612 -35.64591 -34.60410 -31.50033 -28.99316 -28.24361
-26.71732 -26.49165 -24.02205 -22.02936 -19.58992 -18.71750 -18.24633 -17.15827
-16.74640 -16.53024 -16.27301 -15.62619 -15.34538 -15.14264 -14.59010 -14.06332
-13.87164 -13.72578 -13.52853 -13.22295 -13.17744 -12.80744 -12.75000 -12.67833
-12.46817 -12.32341 -12.08197 -11.96207 -11.89524 -11.27020 -10.98088 -10.55952
-10.38410 -9.43049 -8.13326 -6.23424 1.49450 1.52414 1.56508 1.61016
1.65756 1.73448 2.09306 2.49182 2.83129 3.17964 3.59521 3.70960
3.82294 4.05068 4.35006 4.46226 4.55237 4.59229 4.66077 4.81836
4.82343 4.89325 4.92889 4.97786 5.01511 5.08006 5.15561 5.43111
5.44913 5.66000 5.87010 6.28870 6.44660 6.85931 7.02013 7.26253
7.46952 8.96421
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.043966 B = 0.005093 C = 0.004813
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 636.695829 B = 5496.135987 C = 5816.113992
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.059 3.941
3 C -0.149 4.149
4 C 0.244 3.756
5 N -0.477 5.477
6 C -0.123 4.123
7 C 0.540 3.460
8 O -0.566 6.566
9 N -0.644 5.644
10 C 0.110 3.890
11 C 0.018 3.982
12 C -0.526 4.526
13 H 0.066 0.934
14 C 0.022 3.978
15 N -0.919 5.919
16 Si 0.954 3.046
17 H -0.274 1.274
18 H -0.290 1.290
19 H -0.266 1.266
20 C 0.109 3.891
21 H 0.074 0.926
22 H 0.091 0.909
23 H 0.060 0.940
24 H 0.064 0.936
25 H 0.092 0.908
26 H 0.073 0.927
27 H 0.114 0.886
28 H 0.107 0.893
29 H 0.081 0.919
30 H 0.060 0.940
31 H 0.039 0.961
32 H 0.263 0.737
33 H 0.059 0.941
34 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.131 7.069 7.915 10.613
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C 0.055 3.945
3 C -0.207 4.207
4 C -0.073 4.073
5 N -0.152 5.152
6 C -0.164 4.164
7 C 0.331 3.669
8 O -0.448 6.448
9 N -0.377 5.377
10 C -0.012 4.012
11 C -0.001 4.001
12 C -0.564 4.564
13 H 0.085 0.915
14 C -0.178 4.178
15 N -0.558 5.558
16 Si 0.780 3.220
17 H -0.200 1.200
18 H -0.216 1.216
19 H -0.191 1.191
20 C -0.014 4.014
21 H 0.093 0.907
22 H 0.110 0.890
23 H 0.079 0.921
24 H 0.083 0.917
25 H 0.110 0.890
26 H 0.092 0.908
27 H 0.132 0.868
28 H 0.125 0.875
29 H 0.099 0.901
30 H 0.079 0.921
31 H 0.058 0.942
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.101 0.899
Dipole moment (debyes) X Y Z Total
from point charges 0.023 6.648 9.609 11.685
hybrid contribution 0.344 -0.434 -1.154 1.280
sum 0.368 6.214 8.455 10.500
Atomic orbital electron populations
1.22120 0.90443 1.03247 1.05057 1.17981 0.97768 0.94978 0.83755
1.22111 1.01493 0.92027 1.05048 1.29299 0.91846 0.92212 0.93988
1.81213 1.10522 1.10623 1.12807 1.21634 1.03933 1.00922 0.89910
1.20159 0.80074 0.83617 0.83054 1.90529 1.40547 1.27814 1.85896
1.49976 1.50900 1.31919 1.04929 1.23395 0.96412 0.87288 0.94138
1.20295 0.95481 0.91206 0.93155 1.21244 1.35999 0.92514 1.06634
0.91544 1.25715 0.96165 0.95939 0.99983 1.70051 1.46734 0.98702
1.40277 0.85614 0.78872 0.77490 0.80029 1.20009 1.21551 1.19072
1.23174 1.00316 0.99239 0.78626 0.90668 0.89023 0.92067 0.91694
0.88988 0.90752 0.86827 0.87476 0.90069 0.92122 0.94241 0.92778
0.92220 0.89859
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.18 8.13 71.98 0.59 -2.59 16
2 C 0.06 1.28 0.69 -53.99 -0.04 1.24 16
3 C -0.15 -2.98 8.13 71.98 0.59 -2.39 16
4 C 0.24 5.89 13.86 89.44 1.24 7.13 16
5 N -0.48 -13.74 18.54 20.01 0.37 -13.36 16
6 C -0.12 -2.92 4.55 29.85 0.14 -2.79 16
7 C 0.54 16.67 7.49 87.66 0.66 17.33 16
8 O -0.57 -19.05 12.12 -3.03 -0.04 -19.08 16
9 N -0.64 -22.48 3.69 -857.69 -3.16 -25.64 16
10 C 0.11 4.17 8.00 83.27 0.67 4.84 16
11 C 0.02 0.79 3.79 -11.11 -0.04 0.75 16
12 C -0.53 -25.42 8.83 25.60 0.23 -25.20 16
13 H 0.07 3.11 7.81 -2.91 -0.02 3.08 16
14 C 0.02 1.11 5.46 84.65 0.46 1.57 16
15 N -0.92 -48.92 13.26 21.45 0.28 -48.63 16
16 Si 0.95 39.62 29.54 68.60 2.03 41.65 16
17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
18 H -0.29 -12.12 7.11 99.48 0.71 -11.42 16
19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16
20 C 0.11 4.07 8.17 83.19 0.68 4.75 16
21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
22 H 0.09 2.30 5.51 -2.39 -0.01 2.28 16
23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
24 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16
25 H 0.09 2.20 5.51 -2.39 -0.01 2.18 16
26 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
27 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16
28 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16
29 H 0.08 2.98 8.10 -2.39 -0.02 2.96 16
30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16
31 H 0.04 1.96 8.11 -2.39 -0.02 1.94 16
32 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16
33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16
34 H 0.08 2.95 8.10 -2.38 -0.02 2.93 16
Total: -1.00 -55.82 292.17 5.73 -50.09
By element:
Atomic # 1 Polarization: 9.26 SS G_CDS: 1.09 Total: 10.35 kcal
Atomic # 6 Polarization: -0.52 SS G_CDS: 5.16 Total: 4.63 kcal
Atomic # 7 Polarization: -85.13 SS G_CDS: -2.51 Total: -87.64 kcal
Atomic # 8 Polarization: -19.05 SS G_CDS: -0.04 Total: -19.08 kcal
Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal
Total: -55.82 5.73 -50.09 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598022623.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 53.939 kcal
(2) G-P(sol) polarization free energy of solvation -55.816 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.877 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.728 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.088 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.851 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds