Wall clock time and date at job start Mon Mar 30 2020 03:15:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.46997 * 2 1
4 4 C 1.53000 * 109.46767 * 59.99825 * 3 2 1
5 5 C 1.47200 * 109.46766 * 300.00230 * 3 2 1
6 6 N 3.43553 * 83.99440 * 321.44655 * 2 1 3
7 7 C 1.50698 * 109.46913 * 180.02562 * 3 2 1
8 8 O 1.21284 * 119.99480 * 243.21153 * 7 3 2
9 9 N 1.34776 * 120.00116 * 63.21051 * 7 3 2
10 10 C 1.47061 * 136.05904 * 4.42577 * 9 7 3
11 11 C 1.53751 * 87.89019 * 152.95848 * 10 9 7
12 12 C 1.50704 * 114.26916 * 139.79044 * 11 10 9
13 13 H 1.07993 * 119.99616 * 266.48167 * 12 11 10
14 14 C 1.37875 * 119.99753 * 86.47190 * 12 11 10
15 15 N 1.31509 * 120.00389 * 0.02562 * 14 12 11
16 16 Si 1.86802 * 119.99624 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47068 * 0.02562 * 16 14 12
18 18 H 1.48506 * 109.47161 * 120.00241 * 16 14 12
19 19 H 1.48498 * 109.47409 * 240.00184 * 16 14 12
20 20 C 1.47063 * 136.05683 * 184.78792 * 9 7 3
21 21 H 1.08998 * 109.47128 * 180.02562 * 1 2 3
22 22 H 1.09002 * 109.47295 * 60.00047 * 1 2 3
23 23 H 1.09005 * 109.47274 * 299.99906 * 1 2 3
24 24 H 1.08994 * 109.47012 * 119.99996 * 2 1 3
25 25 H 1.08995 * 109.47232 * 240.00117 * 2 1 3
26 26 H 1.08996 * 109.46907 * 53.85774 * 4 3 2
27 27 H 1.09004 * 109.46968 * 173.85132 * 4 3 2
28 28 H 1.08994 * 109.47339 * 293.85342 * 4 3 2
29 29 H 1.09005 * 113.46227 * 267.69427 * 10 9 7
30 30 H 1.09007 * 113.46728 * 38.12719 * 10 9 7
31 31 H 1.09004 * 114.39265 * 272.67078 * 11 10 9
32 32 H 0.97001 * 119.99871 * 180.02562 * 15 14 12
33 33 H 1.09005 * 113.46953 * 321.86659 * 20 9 7
34 34 H 1.09002 * 113.46825 * 92.24966 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.5299 2.1638 1.2492
5 6 1.5492 2.1364 -1.2019
6 7 1.1705 2.6719 -2.1294
7 6 3.5469 1.4426 -0.0006
8 8 4.1537 1.9158 0.9369
9 7 4.2204 0.9166 -1.0429
10 6 3.8682 0.3445 -2.3511
11 6 5.2539 0.7833 -2.8524
12 6 5.9334 -0.2182 -3.7504
13 1 6.6180 -0.9411 -3.3322
14 6 5.6809 -0.2114 -5.1058
15 7 4.8476 0.6692 -5.6152
16 14 6.5227 -1.4533 -6.2188
17 1 7.4056 -2.3279 -5.4059
18 1 5.4966 -2.2827 -6.9003
19 1 7.3348 -0.7368 -7.2349
20 6 5.6304 0.6565 -1.3698
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 0.5138 0.8900
24 1 1.8933 -0.5138 0.8899
25 1 1.8933 -0.5138 -0.8899
26 1 1.8006 1.5903 2.1358
27 1 1.9803 3.1548 1.3060
28 1 0.4455 2.2600 1.1959
29 1 3.7366 -0.7374 -2.3304
30 1 3.0435 0.8607 -2.8428
31 1 5.2913 1.8024 -3.2376
32 1 4.6697 0.6737 -6.5687
33 1 6.3073 1.4385 -1.0255
34 1 5.9638 -0.3427 -1.0896
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598025638.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:59
Heat of formation + Delta-G solvation = 16.774722 kcal
Electronic energy + Delta-G solvation = -16873.535919 eV
Core-core repulsion = 14193.665024 eV
Total energy + Delta-G solvation = -2679.870895 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.20131 -37.86304 -36.68026 -34.70295 -32.73627 -30.04975 -29.35201 -26.15381
-25.09556 -24.49631 -22.32974 -20.85796 -19.06017 -17.33748 -16.73551 -16.01070
-15.63717 -14.76430 -14.62559 -14.34979 -13.97958 -13.39158 -13.04031 -12.83184
-12.49737 -12.41608 -12.35371 -12.17568 -11.78369 -11.59306 -11.56902 -11.37687
-11.09955 -10.99745 -10.91195 -10.72526 -10.38164 -9.67792 -9.29043 -9.05601
-8.62840 -8.00841 -6.20586 -4.27746 2.63969 2.89408 2.97064 3.20985
3.30040 3.32789 3.47544 3.97400 4.30548 4.60922 4.67512 4.86041
5.07894 5.16086 5.30112 5.50368 5.64234 5.76723 5.83076 5.90073
5.97603 6.04563 6.07501 6.16120 6.21996 6.37191 6.44823 6.54918
6.73074 7.50521 7.65492 7.75970 8.12561 8.31362 8.52889 8.77084
9.39752 10.88801
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032652 B = 0.006771 C = 0.006328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 857.311263 B = 4134.164225 C = 4424.061545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.111 4.111
3 C 0.026 3.974
4 C -0.126 4.126
5 C 0.212 3.788
6 N -0.409 5.409
7 C 0.544 3.456
8 O -0.547 6.547
9 N -0.636 5.636
10 C 0.093 3.907
11 C 0.036 3.964
12 C -0.519 4.519
13 H 0.066 0.934
14 C 0.068 3.932
15 N -0.883 5.883
16 Si 0.896 3.104
17 H -0.270 1.270
18 H -0.283 1.283
19 H -0.282 1.282
20 C 0.101 3.899
21 H 0.064 0.936
22 H 0.054 0.946
23 H 0.063 0.937
24 H 0.087 0.913
25 H 0.081 0.919
26 H 0.082 0.918
27 H 0.071 0.929
28 H 0.070 0.930
29 H 0.078 0.922
30 H 0.059 0.941
31 H 0.068 0.932
32 H 0.264 0.736
33 H 0.060 0.940
34 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.840 -2.569 10.347 12.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.150 4.150
3 C 0.019 3.981
4 C -0.184 4.184
5 C -0.106 4.106
6 N -0.084 5.084
7 C 0.330 3.670
8 O -0.426 6.426
9 N -0.369 5.369
10 C -0.030 4.030
11 C 0.017 3.983
12 C -0.557 4.557
13 H 0.084 0.916
14 C -0.136 4.136
15 N -0.519 5.519
16 Si 0.723 3.277
17 H -0.195 1.195
18 H -0.209 1.209
19 H -0.208 1.208
20 C -0.021 4.021
21 H 0.083 0.917
22 H 0.074 0.926
23 H 0.082 0.918
24 H 0.106 0.894
25 H 0.099 0.901
26 H 0.101 0.899
27 H 0.090 0.910
28 H 0.088 0.912
29 H 0.096 0.904
30 H 0.077 0.923
31 H 0.086 0.914
32 H 0.074 0.926
33 H 0.078 0.922
34 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -7.285 -1.348 9.422 11.986
hybrid contribution 0.431 -0.885 -0.457 1.086
sum -6.854 -2.233 8.965 11.504
Atomic orbital electron populations
1.21873 0.94490 1.02514 1.02355 1.21623 0.97027 0.91736 1.04582
1.18544 0.93420 0.96702 0.89442 1.21726 1.00893 1.01424 0.94372
1.28436 0.94090 0.94068 0.94039 1.81228 1.08596 1.08754 1.09774
1.19368 0.87350 0.79056 0.81204 1.90670 1.69210 1.47670 1.35068
1.50038 1.11749 1.57890 1.17184 1.23808 1.02955 0.97787 0.78408
1.20378 0.90101 0.98908 0.88899 1.20918 1.26921 1.16154 0.91721
0.91618 1.25055 0.94732 0.95566 0.98220 1.69973 1.34282 1.34548
1.13086 0.86476 0.79448 0.81156 0.80603 1.19485 1.20891 1.20835
1.23404 0.81400 0.99885 0.97379 0.91683 0.92649 0.91783 0.89405
0.90077 0.89937 0.90987 0.91161 0.90358 0.92259 0.91398 0.92596
0.92159 0.90383
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.51 9.31 37.16 0.35 -1.17 16
2 C -0.11 -1.32 4.87 -26.73 -0.13 -1.45 16
3 C 0.03 0.37 0.53 -158.44 -0.08 0.29 16
4 C -0.13 -1.46 7.24 37.16 0.27 -1.20 16
5 C 0.21 3.60 10.76 -20.76 -0.22 3.37 16
6 N -0.41 -7.86 18.51 42.15 0.78 -7.08 16
7 C 0.54 9.98 6.70 -10.99 -0.07 9.91 16
8 O -0.55 -11.21 16.71 5.55 0.09 -11.12 16
9 N -0.64 -12.47 3.59 -185.10 -0.66 -13.14 16
10 C 0.09 1.94 6.30 -8.39 -0.05 1.88 16
11 C 0.04 0.85 3.79 -91.12 -0.35 0.51 16
12 C -0.52 -13.06 8.83 -34.44 -0.30 -13.37 16
13 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16
14 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16
15 N -0.88 -24.42 13.26 55.43 0.74 -23.69 16
16 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16
17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16
18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
20 C 0.10 2.03 8.17 -8.52 -0.07 1.96 16
21 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
22 H 0.05 0.62 7.23 -51.93 -0.38 0.25 16
23 H 0.06 0.52 6.57 -51.93 -0.34 0.18 16
24 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
25 H 0.08 1.07 6.80 -51.93 -0.35 0.71 16
26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16
27 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16
28 H 0.07 0.65 6.77 -51.93 -0.35 0.30 16
29 H 0.08 1.55 8.06 -51.93 -0.42 1.13 16
30 H 0.06 1.32 6.90 -51.92 -0.36 0.96 16
31 H 0.07 1.78 8.11 -51.93 -0.42 1.36 16
32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
34 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16
LS Contribution 290.09 15.07 4.37 4.37
Total: -1.00 -29.37 290.09 -5.16 -34.53
By element:
Atomic # 1 Polarization: 3.42 SS G_CDS: -4.69 Total: -1.27 kcal
Atomic # 6 Polarization: 3.19 SS G_CDS: -0.77 Total: 2.42 kcal
Atomic # 7 Polarization: -44.76 SS G_CDS: 0.85 Total: -43.90 kcal
Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.12 kcal
Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal
Total LS contribution 4.37 Total: 4.37 kcal
Total: -29.37 -5.16 -34.53 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598025638.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.308 kcal
(2) G-P(sol) polarization free energy of solvation -29.373 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.935 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.775 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds