Wall clock time and date at job start Mon Mar 30 2020 03:15:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53008 * 109.46997 * 2 1
4 4 C 1.53000 * 109.46767 * 59.99825 * 3 2 1
5 5 C 1.47200 * 109.46766 * 300.00230 * 3 2 1
6 6 N 3.43553 * 83.99440 * 321.44655 * 2 1 3
7 7 C 1.50698 * 109.46913 * 180.02562 * 3 2 1
8 8 O 1.21284 * 119.99480 * 243.21153 * 7 3 2
9 9 N 1.34776 * 120.00116 * 63.21051 * 7 3 2
10 10 C 1.47061 * 136.05904 * 4.42577 * 9 7 3
11 11 C 1.53751 * 87.89019 * 152.95848 * 10 9 7
12 12 C 1.50704 * 114.26916 * 139.79044 * 11 10 9
13 13 H 1.07993 * 119.99616 * 266.48167 * 12 11 10
14 14 C 1.37875 * 119.99753 * 86.47190 * 12 11 10
15 15 N 1.31509 * 120.00389 * 0.02562 * 14 12 11
16 16 Si 1.86802 * 119.99624 * 180.02562 * 14 12 11
17 17 H 1.48498 * 109.47068 * 0.02562 * 16 14 12
18 18 H 1.48506 * 109.47161 * 120.00241 * 16 14 12
19 19 H 1.48498 * 109.47409 * 240.00184 * 16 14 12
20 20 C 1.47063 * 136.05683 * 184.78792 * 9 7 3
21 21 H 1.08998 * 109.47128 * 180.02562 * 1 2 3
22 22 H 1.09002 * 109.47295 * 60.00047 * 1 2 3
23 23 H 1.09005 * 109.47274 * 299.99906 * 1 2 3
24 24 H 1.08994 * 109.47012 * 119.99996 * 2 1 3
25 25 H 1.08995 * 109.47232 * 240.00117 * 2 1 3
26 26 H 1.08996 * 109.46907 * 53.85774 * 4 3 2
27 27 H 1.09004 * 109.46968 * 173.85132 * 4 3 2
28 28 H 1.08994 * 109.47339 * 293.85342 * 4 3 2
29 29 H 1.09005 * 113.46227 * 267.69427 * 10 9 7
30 30 H 1.09007 * 113.46728 * 38.12719 * 10 9 7
31 31 H 1.09004 * 114.39265 * 272.67078 * 11 10 9
32 32 H 0.97001 * 119.99871 * 180.02562 * 15 14 12
33 33 H 1.09005 * 113.46953 * 321.86659 * 20 9 7
34 34 H 1.09002 * 113.46825 * 92.24966 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.5299 2.1638 1.2492
5 6 1.5492 2.1364 -1.2019
6 7 1.1705 2.6719 -2.1294
7 6 3.5469 1.4426 -0.0006
8 8 4.1537 1.9158 0.9369
9 7 4.2204 0.9166 -1.0429
10 6 3.8682 0.3445 -2.3511
11 6 5.2539 0.7833 -2.8524
12 6 5.9334 -0.2182 -3.7504
13 1 6.6180 -0.9411 -3.3322
14 6 5.6809 -0.2114 -5.1058
15 7 4.8476 0.6692 -5.6152
16 14 6.5227 -1.4533 -6.2188
17 1 7.4056 -2.3279 -5.4059
18 1 5.4966 -2.2827 -6.9003
19 1 7.3348 -0.7368 -7.2349
20 6 5.6304 0.6565 -1.3698
21 1 -0.3633 -1.0276 0.0005
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3634 0.5138 0.8900
24 1 1.8933 -0.5138 0.8899
25 1 1.8933 -0.5138 -0.8899
26 1 1.8006 1.5903 2.1358
27 1 1.9803 3.1548 1.3060
28 1 0.4455 2.2600 1.1959
29 1 3.7366 -0.7374 -2.3304
30 1 3.0435 0.8607 -2.8428
31 1 5.2913 1.8024 -3.2376
32 1 4.6697 0.6737 -6.5687
33 1 6.3073 1.4385 -1.0255
34 1 5.9638 -0.3427 -1.0896
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598025638.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:58
Heat of formation + Delta-G solvation = -1.314485 kcal
Electronic energy + Delta-G solvation = -16874.320326 eV
Core-core repulsion = 14193.665024 eV
Total energy + Delta-G solvation = -2680.655301 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.68834 -39.40042 -38.14594 -35.95747 -34.68349 -31.31604 -30.70586 -27.66642
-26.82870 -25.88297 -23.38733 -22.50659 -20.63230 -18.98623 -18.48124 -17.24166
-17.17413 -16.56008 -16.14717 -15.60307 -15.26723 -14.84825 -14.55791 -14.22944
-14.01986 -13.69291 -13.54427 -13.32147 -13.25185 -13.11570 -12.87269 -12.79133
-12.62553 -12.57472 -12.20768 -12.06415 -11.70943 -11.38976 -11.09970 -10.76829
-10.56157 -9.65078 -8.18932 -6.31599 1.20518 1.45083 1.48231 1.53215
1.56945 1.59507 1.98257 2.44219 2.70232 3.10933 3.27064 3.63292
3.74559 4.16237 4.30583 4.32950 4.40115 4.50481 4.66013 4.69663
4.70998 4.80817 4.86427 4.90930 4.99029 5.04439 5.09606 5.22169
5.40419 5.55640 5.77453 6.18402 6.30635 6.75320 6.79462 6.97962
7.39669 8.91127
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032652 B = 0.006771 C = 0.006328
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 857.311263 B = 4134.164225 C = 4424.061545
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.109 4.109
3 C 0.030 3.970
4 C -0.124 4.124
5 C 0.230 3.770
6 N -0.455 5.455
7 C 0.542 3.458
8 O -0.566 6.566
9 N -0.639 5.639
10 C 0.113 3.887
11 C 0.018 3.982
12 C -0.523 4.523
13 H 0.075 0.925
14 C 0.016 3.984
15 N -0.924 5.924
16 Si 0.962 3.038
17 H -0.257 1.257
18 H -0.282 1.282
19 H -0.286 1.286
20 C 0.110 3.890
21 H 0.082 0.918
22 H 0.035 0.965
23 H 0.086 0.914
24 H 0.112 0.888
25 H 0.065 0.935
26 H 0.102 0.898
27 H 0.057 0.943
28 H 0.098 0.902
29 H 0.093 0.907
30 H 0.040 0.960
31 H 0.028 0.972
32 H 0.263 0.737
33 H 0.060 0.940
34 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.259 -4.243 11.995 14.648
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.148 4.148
3 C 0.023 3.977
4 C -0.182 4.182
5 C -0.088 4.088
6 N -0.131 5.131
7 C 0.330 3.670
8 O -0.446 6.446
9 N -0.372 5.372
10 C -0.010 4.010
11 C -0.001 4.001
12 C -0.561 4.561
13 H 0.093 0.907
14 C -0.184 4.184
15 N -0.562 5.562
16 Si 0.787 3.213
17 H -0.181 1.181
18 H -0.208 1.208
19 H -0.212 1.212
20 C -0.011 4.011
21 H 0.101 0.899
22 H 0.054 0.946
23 H 0.105 0.895
24 H 0.130 0.870
25 H 0.083 0.917
26 H 0.121 0.879
27 H 0.077 0.923
28 H 0.116 0.884
29 H 0.111 0.889
30 H 0.059 0.941
31 H 0.046 0.954
32 H 0.072 0.928
33 H 0.079 0.921
34 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -7.703 -3.025 11.095 13.842
hybrid contribution 0.596 -0.314 -0.906 1.129
sum -7.107 -3.339 10.189 12.864
Atomic orbital electron populations
1.21874 0.92606 1.03833 1.02497 1.21715 0.98595 0.89447 1.05001
1.18829 0.90448 0.98828 0.89593 1.21827 1.02513 1.00552 0.93297
1.28949 0.93008 0.93006 0.93870 1.81238 1.10153 1.10511 1.11187
1.19995 0.88926 0.77779 0.80298 1.90662 1.70164 1.48104 1.35650
1.50005 1.11433 1.58444 1.17275 1.23465 1.00537 0.98286 0.78714
1.20270 0.92436 0.96629 0.90806 1.21267 1.26596 1.16113 0.92149
0.90661 1.25858 0.95368 0.97285 0.99839 1.70112 1.36234 1.36640
1.13209 0.85447 0.78407 0.78882 0.78582 1.18055 1.20752 1.21226
1.23268 0.81976 1.01058 0.94840 0.89862 0.94578 0.89519 0.86985
0.91672 0.87945 0.92339 0.88355 0.88863 0.94128 0.95398 0.92842
0.92149 0.88282
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.48 9.31 71.98 0.67 -1.81 16
2 C -0.11 -2.29 4.87 30.60 0.15 -2.14 16
3 C 0.03 0.81 0.53 -54.73 -0.03 0.78 16
4 C -0.12 -2.53 7.24 71.98 0.52 -2.01 16
5 C 0.23 7.69 10.76 89.44 0.96 8.66 16
6 N -0.46 -17.80 18.51 20.01 0.37 -17.43 16
7 C 0.54 19.19 6.70 87.66 0.59 19.78 16
8 O -0.57 -22.35 16.71 -3.04 -0.05 -22.40 16
9 N -0.64 -24.64 3.59 -857.91 -3.08 -27.72 16
10 C 0.11 4.71 6.30 83.26 0.52 5.24 16
11 C 0.02 0.85 3.79 -11.12 -0.04 0.81 16
12 C -0.52 -26.27 8.83 25.60 0.23 -26.04 16
13 H 0.08 3.56 7.81 -2.91 -0.02 3.54 16
14 C 0.02 0.85 5.46 84.65 0.46 1.31 16
15 N -0.92 -52.37 13.26 21.45 0.28 -52.09 16
16 Si 0.96 40.89 29.54 68.60 2.03 42.92 16
17 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16
18 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16
19 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16
20 C 0.11 4.37 8.17 83.17 0.68 5.05 16
21 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16
22 H 0.04 0.74 7.23 -2.39 -0.02 0.72 16
23 H 0.09 1.04 6.57 -2.38 -0.02 1.02 16
24 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16
25 H 0.06 1.59 6.80 -2.39 -0.02 1.58 16
26 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.06 1.37 7.97 -2.38 -0.02 1.35 16
28 H 0.10 1.47 6.77 -2.39 -0.02 1.45 16
29 H 0.09 3.61 8.06 -2.38 -0.02 3.59 16
30 H 0.04 1.84 6.90 -2.38 -0.02 1.83 16
31 H 0.03 1.54 8.11 -2.39 -0.02 1.52 16
32 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16
33 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16
34 H 0.10 3.52 8.10 -2.39 -0.02 3.50 16
Total: -1.00 -64.15 290.09 5.36 -58.79
By element:
Atomic # 1 Polarization: 7.21 SS G_CDS: 1.09 Total: 8.30 kcal
Atomic # 6 Polarization: 4.92 SS G_CDS: 4.71 Total: 9.63 kcal
Atomic # 7 Polarization: -94.81 SS G_CDS: -2.42 Total: -97.23 kcal
Atomic # 8 Polarization: -22.35 SS G_CDS: -0.05 Total: -22.40 kcal
Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal
Total: -64.15 5.36 -58.79 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598025638.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.475 kcal
(2) G-P(sol) polarization free energy of solvation -64.146 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.671 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.356 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.314 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds