Wall clock time and date at job start Mon Mar 30 2020 03:16:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52992 * 109.47224 * 2 1
4 4 C 1.52997 * 109.47482 * 300.00294 * 3 2 1
5 5 C 1.47203 * 109.46792 * 60.00456 * 3 2 1
6 6 N 3.43550 * 83.99781 * 38.55684 * 2 1 3
7 7 C 1.50706 * 109.47161 * 179.97438 * 3 2 1
8 8 O 1.21282 * 119.99865 * 0.02562 * 7 3 2
9 9 N 1.34774 * 120.00164 * 180.02562 * 7 3 2
10 10 C 1.47071 * 136.05624 * 359.63181 * 9 7 3
11 11 C 1.53748 * 87.88521 * 152.96379 * 10 9 7
12 12 C 1.50704 * 114.08774 * 139.77949 * 11 10 9
13 13 H 1.07998 * 120.00435 * 266.56316 * 12 11 10
14 14 C 1.37885 * 119.99813 * 86.55747 * 12 11 10
15 15 N 1.31518 * 120.00032 * 180.02562 * 14 12 11
16 16 Si 1.86801 * 119.99982 * 0.02562 * 14 12 11
17 17 H 1.48500 * 109.47099 * 90.00201 * 16 14 12
18 18 H 1.48499 * 109.47027 * 209.99708 * 16 14 12
19 19 H 1.48495 * 109.47069 * 330.00056 * 16 14 12
20 20 C 1.47062 * 136.06004 * 180.02562 * 9 7 3
21 21 H 1.09004 * 109.47298 * 179.97438 * 1 2 3
22 22 H 1.09001 * 109.46993 * 299.99360 * 1 2 3
23 23 H 1.09004 * 109.47552 * 59.99646 * 1 2 3
24 24 H 1.09001 * 109.46997 * 240.00082 * 2 1 3
25 25 H 1.08996 * 109.47134 * 120.00834 * 2 1 3
26 26 H 1.09002 * 109.47153 * 59.99783 * 4 3 2
27 27 H 1.09001 * 109.46832 * 299.99974 * 4 3 2
28 28 H 1.09004 * 109.47261 * 179.97438 * 4 3 2
29 29 H 1.09005 * 113.46542 * 267.69606 * 10 9 7
30 30 H 1.09002 * 113.46576 * 38.13329 * 10 9 7
31 31 H 1.09002 * 114.57880 * 272.65785 * 11 10 9
32 32 H 0.96993 * 119.99974 * 179.97438 * 15 14 12
33 33 H 1.09002 * 113.46946 * 321.86676 * 20 9 7
34 34 H 1.09003 * 113.46712 * 92.29969 * 20 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 1.5300 2.1638 -1.2492
5 6 1.5494 2.1362 1.2020
6 7 1.1707 2.6718 2.1296
7 6 3.5470 1.4424 0.0006
8 8 4.1534 0.3920 0.0006
9 7 4.2209 2.6096 0.0013
10 6 3.8666 4.0369 -0.0050
11 6 5.2043 4.3136 0.7006
12 6 5.9166 5.5466 0.2070
13 1 6.6577 5.4657 -0.5745
14 6 5.6220 6.7780 0.7529
15 7 6.2433 7.8540 0.3218
16 14 4.3406 6.9179 2.1049
17 1 4.9981 6.7658 3.4277
18 1 3.6837 8.2475 2.0286
19 1 3.3215 5.8516 1.9332
20 6 5.6342 3.0163 0.0015
21 1 -0.3634 -1.0277 -0.0005
22 1 -0.3633 0.5137 0.8901
23 1 -0.3634 0.5139 -0.8900
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8899
26 1 0.4400 2.1638 -1.2491
27 1 1.8933 1.6499 -2.1392
28 1 1.8930 3.1916 -1.2489
29 1 3.8070 4.4650 -1.0057
30 1 2.9951 4.2705 0.6065
31 1 5.1663 4.2444 1.7877
32 1 6.0358 8.7203 0.7056
33 1 6.2689 2.3803 0.6186
34 1 6.0403 3.1755 -0.9974
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598025639.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:16:00
Heat of formation + Delta-G solvation = 1.175800 kcal
Electronic energy + Delta-G solvation = -16920.763844 eV
Core-core repulsion = 14240.216529 eV
Total energy + Delta-G solvation = -2680.547315 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.76253 -39.54251 -38.14834 -35.94243 -34.71736 -32.03089 -30.43516 -27.49944
-26.86233 -26.46569 -23.21336 -22.31636 -20.57822 -19.23082 -18.70469 -17.39361
-17.23412 -16.58765 -16.00284 -15.60199 -15.13509 -15.07876 -14.89966 -14.53219
-14.11054 -13.77684 -13.74470 -13.50825 -13.37297 -13.06637 -12.82501 -12.74062
-12.69969 -12.51251 -12.05248 -11.95379 -11.75102 -11.60419 -11.26549 -10.86298
-10.66802 -9.73112 -8.32483 -6.37725 1.16188 1.31368 1.38046 1.44196
1.48138 1.51274 1.92901 2.30727 2.66840 2.98978 3.21899 3.60755
3.72580 3.94345 4.21077 4.33537 4.37235 4.46224 4.54518 4.58923
4.63354 4.73783 4.76410 4.86058 4.90690 5.03188 5.12404 5.19176
5.31943 5.42782 5.56417 6.24706 6.25184 6.67213 6.72105 6.93206
7.29446 8.82732
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033147 B = 0.007596 C = 0.006764
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 844.523345 B = 3685.040410 C = 4138.308095
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.094 4.094
3 C 0.029 3.971
4 C -0.145 4.145
5 C 0.232 3.768
6 N -0.455 5.455
7 C 0.545 3.455
8 O -0.563 6.563
9 N -0.639 5.639
10 C 0.098 3.902
11 C -0.020 4.020
12 C -0.506 4.506
13 H 0.054 0.946
14 C 0.032 3.968
15 N -0.936 5.936
16 Si 0.925 3.075
17 H -0.277 1.277
18 H -0.284 1.284
19 H -0.248 1.248
20 C 0.120 3.880
21 H 0.082 0.918
22 H 0.037 0.963
23 H 0.084 0.916
24 H 0.106 0.894
25 H 0.063 0.937
26 H 0.105 0.895
27 H 0.104 0.896
28 H 0.063 0.937
29 H 0.103 0.897
30 H 0.056 0.944
31 H 0.054 0.946
32 H 0.268 0.732
33 H 0.068 0.932
34 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.178 -12.859 -4.080 18.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.133 4.133
3 C 0.023 3.977
4 C -0.203 4.203
5 C -0.086 4.086
6 N -0.130 5.130
7 C 0.333 3.667
8 O -0.443 6.443
9 N -0.372 5.372
10 C -0.025 4.025
11 C -0.040 4.040
12 C -0.544 4.544
13 H 0.072 0.928
14 C -0.168 4.168
15 N -0.575 5.575
16 Si 0.750 3.250
17 H -0.203 1.203
18 H -0.210 1.210
19 H -0.172 1.172
20 C -0.001 4.001
21 H 0.101 0.899
22 H 0.056 0.944
23 H 0.102 0.898
24 H 0.124 0.876
25 H 0.082 0.918
26 H 0.123 0.877
27 H 0.122 0.878
28 H 0.082 0.918
29 H 0.121 0.879
30 H 0.074 0.926
31 H 0.072 0.928
32 H 0.077 0.923
33 H 0.087 0.913
34 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -12.531 -12.605 -2.648 17.970
hybrid contribution 0.109 0.530 0.541 0.765
sum -12.422 -12.075 -2.107 17.451
Atomic orbital electron populations
1.21922 0.92924 1.03758 1.02482 1.21492 0.97462 0.89274 1.05043
1.18784 0.90452 0.98888 0.89625 1.22104 1.04209 1.00483 0.93521
1.28895 0.92944 0.92739 0.93992 1.81226 1.09992 1.10016 1.11806
1.19951 0.88835 0.81734 0.76159 1.90681 1.70177 1.30952 1.52443
1.49922 1.10934 1.05912 1.70394 1.23808 0.99610 0.77021 1.02030
1.20738 0.93694 0.93723 0.95836 1.20902 1.22351 0.90265 1.20849
0.92796 1.25636 0.97383 0.95517 0.98226 1.69995 1.43665 0.99594
1.44250 0.86088 0.80578 0.78187 0.80112 1.20311 1.21021 1.17188
1.23042 0.82310 0.93426 1.01370 0.89934 0.94359 0.89765 0.87584
0.91790 0.87670 0.87774 0.91775 0.87862 0.92580 0.92839 0.92262
0.91320 0.88836
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.15 9.31 71.98 0.67 -1.48 16
2 C -0.09 -1.79 4.25 30.59 0.13 -1.66 16
3 C 0.03 0.71 0.53 -54.73 -0.03 0.68 16
4 C -0.15 -2.56 7.96 71.98 0.57 -1.99 16
5 C 0.23 6.86 11.18 89.44 1.00 7.86 16
6 N -0.45 -15.67 18.54 20.01 0.37 -15.30 16
7 C 0.55 17.51 6.70 87.66 0.59 18.10 16
8 O -0.56 -20.72 16.76 -3.04 -0.05 -20.78 16
9 N -0.64 -22.11 3.58 -857.83 -3.07 -25.18 16
10 C 0.10 3.55 5.41 83.26 0.45 4.00 16
11 C -0.02 -0.86 2.98 -11.12 -0.03 -0.89 16
12 C -0.51 -25.83 9.37 25.60 0.24 -25.59 16
13 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16
14 C 0.03 1.71 5.47 84.66 0.46 2.17 16
15 N -0.94 -54.46 13.96 21.45 0.30 -54.16 16
16 Si 0.93 42.10 27.15 68.60 1.86 43.97 16
17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16
18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16
19 H -0.25 -10.65 5.73 99.48 0.57 -10.08 16
20 C 0.12 4.43 8.17 83.18 0.68 5.11 16
21 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16
22 H 0.04 0.66 7.23 -2.39 -0.02 0.64 16
23 H 0.08 0.86 6.43 -2.39 -0.02 0.84 16
24 H 0.11 1.76 8.10 -2.39 -0.02 1.74 16
25 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16
26 H 0.10 1.33 6.43 -2.39 -0.02 1.31 16
27 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16
28 H 0.06 1.31 6.33 -2.38 -0.02 1.29 16
29 H 0.10 3.51 8.06 -2.38 -0.02 3.49 16
30 H 0.06 2.06 6.19 -2.39 -0.01 2.04 16
31 H 0.05 2.35 7.03 -2.39 -0.02 2.33 16
32 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16
33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
34 H 0.09 3.29 8.10 -2.39 -0.02 3.27 16
Total: -1.00 -64.37 284.03 5.10 -59.26
By element:
Atomic # 1 Polarization: 4.92 SS G_CDS: 0.96 Total: 5.88 kcal
Atomic # 6 Polarization: 1.57 SS G_CDS: 4.73 Total: 6.30 kcal
Atomic # 7 Polarization: -92.23 SS G_CDS: -2.40 Total: -94.63 kcal
Atomic # 8 Polarization: -20.72 SS G_CDS: -0.05 Total: -20.78 kcal
Atomic # 14 Polarization: 42.10 SS G_CDS: 1.86 Total: 43.97 kcal
Total: -64.37 5.10 -59.26 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598025639.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 60.440 kcal
(2) G-P(sol) polarization free energy of solvation -64.368 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.928 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds