Wall clock time and date at job start Mon Mar 30 2020 03:41:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47674 * 2 1
4 4 C 1.47205 * 109.47395 * 240.00061 * 2 1 3
5 5 N 2.60803 * 109.47071 * 240.00093 * 2 1 3
6 6 N 1.46505 * 109.47225 * 120.00071 * 2 1 3
7 7 C 1.34772 * 119.99786 * 236.89445 * 6 2 1
8 8 O 1.21287 * 119.99785 * 185.02529 * 7 6 2
9 9 C 1.50698 * 120.00409 * 5.03295 * 7 6 2
10 10 H 1.09005 * 109.46806 * 302.66060 * 9 7 6
11 11 C 1.53001 * 109.47501 * 62.65844 * 9 7 6
12 12 C 1.50698 * 109.47387 * 182.65875 * 9 7 6
13 13 H 1.08001 * 119.99942 * 359.97438 * 12 9 7
14 14 C 1.37878 * 120.00254 * 179.97438 * 12 9 7
15 15 N 1.31516 * 119.99831 * 0.02562 * 14 12 9
16 16 Si 1.86793 * 120.00190 * 180.02562 * 14 12 9
17 17 H 1.48508 * 109.47364 * 90.00125 * 16 14 12
18 18 H 1.48508 * 109.47380 * 210.00067 * 16 14 12
19 19 H 1.48504 * 109.47420 * 330.00085 * 16 14 12
20 20 C 1.46500 * 119.99963 * 56.90078 * 6 2 1
21 21 C 1.52999 * 117.49738 * 196.19888 * 20 6 2
22 22 C 1.52994 * 117.50036 * 127.57222 * 20 6 2
23 23 H 1.09006 * 109.47002 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47348 * 300.00047 * 1 2 3
25 25 H 1.09001 * 109.47133 * 60.00065 * 1 2 3
26 26 H 1.08996 * 109.47398 * 185.66656 * 11 9 7
27 27 H 1.09004 * 109.46692 * 305.66603 * 11 9 7
28 28 H 1.09001 * 109.46998 * 65.65603 * 11 9 7
29 29 H 0.97003 * 119.99983 * 180.02562 * 15 14 12
30 30 H 1.08998 * 115.54671 * 341.89655 * 20 6 2
31 31 H 1.08997 * 117.49738 * 359.97438 * 21 20 6
32 32 H 1.08997 * 117.50307 * 145.01732 * 21 20 6
33 33 H 1.08998 * 117.49903 * 214.97520 * 22 20 6
34 34 H 1.09003 * 117.50288 * 359.97438 * 22 20 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0207 -0.6939 -1.2019
5 7 2.3992 -1.2294 -2.1295
6 7 2.0183 -0.6906 1.1962
7 6 2.8439 -0.0553 2.0512
8 8 3.3208 -0.6545 2.9918
9 6 3.1746 1.3995 1.8387
10 1 3.6105 1.5321 0.8485
11 6 1.8972 2.2344 1.9496
12 6 4.1607 1.8488 2.8860
13 1 4.5125 1.1507 3.6312
14 6 4.6138 3.1509 2.8928
15 7 4.1851 4.0011 1.9856
16 14 5.8367 3.7076 4.1905
17 1 7.2192 3.4912 3.6932
18 1 5.6334 5.1508 4.4756
19 1 5.6298 2.9233 5.4345
20 6 1.6093 -2.0719 1.4628
21 6 1.8247 -2.6117 2.8781
22 6 2.7134 -3.0964 1.7308
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 2.1179 3.2715 1.6971
27 1 1.1475 1.8445 1.2610
28 1 1.5161 2.1817 2.9694
29 1 4.5041 4.9172 1.9902
30 1 0.7262 -2.4132 0.9227
31 1 2.2712 -1.9393 3.6107
32 1 1.0834 -3.3084 3.2694
33 1 2.5567 -4.1120 1.3673
34 1 3.7443 -2.7430 1.7083
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000598137780.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:57
Heat of formation + Delta-G solvation = 35.434141 kcal
Electronic energy + Delta-G solvation = -17207.052323 eV
Core-core repulsion = 14527.990561 eV
Total energy + Delta-G solvation = -2679.061761 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.10728 -36.93206 -35.99874 -34.79378 -33.44139 -30.55049 -29.93934 -25.27744
-24.38292 -23.59924 -22.04779 -21.38444 -18.98040 -17.70294 -16.60767 -16.09418
-15.25846 -14.76816 -14.51522 -14.05514 -13.89708 -13.31633 -13.22705 -13.14344
-12.65298 -12.36063 -11.96998 -11.86126 -11.64888 -11.21273 -11.12601 -10.97760
-10.90261 -10.68769 -10.57066 -10.26918 -10.07588 -10.00013 -9.06122 -8.54661
-8.35817 -8.12727 -6.10013 -4.12666 2.55298 2.87673 3.30531 3.35971
3.37524 3.43238 3.58806 3.95751 4.30002 4.41783 4.99635 5.03738
5.11583 5.19454 5.24711 5.38880 5.48398 5.72666 5.79567 5.94030
5.99348 6.10246 6.32987 6.51173 6.65047 6.71218 6.80704 7.09419
7.33733 7.61069 7.63182 7.83310 7.97518 8.24111 8.94690 9.02066
9.53142 10.98133
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026642 B = 0.008340 C = 0.007227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1050.727984 B = 3356.369744 C = 3873.569785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.229 3.771
3 H 0.153 0.847
4 C 0.202 3.798
5 N -0.429 5.429
6 N -0.592 5.592
7 C 0.526 3.474
8 O -0.521 6.521
9 C 0.026 3.974
10 H 0.052 0.948
11 C -0.142 4.142
12 C -0.502 4.502
13 H 0.075 0.925
14 C 0.060 3.940
15 N -0.895 5.895
16 Si 0.900 3.100
17 H -0.281 1.281
18 H -0.287 1.287
19 H -0.272 1.272
20 C 0.066 3.934
21 C -0.188 4.188
22 C -0.191 4.191
23 H 0.064 0.936
24 H 0.087 0.913
25 H 0.076 0.924
26 H 0.093 0.907
27 H 0.022 0.978
28 H 0.038 0.962
29 H 0.262 0.738
30 H 0.120 0.880
31 H 0.142 0.858
32 H 0.083 0.917
33 H 0.088 0.912
34 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.042 -6.216 -2.516 11.258
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.121 3.879
3 H 0.170 0.830
4 C -0.117 4.117
5 N -0.106 5.106
6 N -0.327 5.327
7 C 0.319 3.681
8 O -0.396 6.396
9 C 0.005 3.995
10 H 0.070 0.930
11 C -0.200 4.200
12 C -0.541 4.541
13 H 0.093 0.907
14 C -0.141 4.141
15 N -0.534 5.534
16 Si 0.728 3.272
17 H -0.207 1.207
18 H -0.213 1.213
19 H -0.197 1.197
20 C -0.039 4.039
21 C -0.225 4.225
22 C -0.230 4.230
23 H 0.083 0.917
24 H 0.105 0.895
25 H 0.095 0.905
26 H 0.111 0.889
27 H 0.041 0.959
28 H 0.057 0.943
29 H 0.071 0.929
30 H 0.138 0.862
31 H 0.160 0.840
32 H 0.101 0.899
33 H 0.106 0.894
34 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges -8.168 -7.125 -3.415 11.364
hybrid contribution 0.534 0.443 0.804 1.062
sum -7.634 -6.682 -2.611 10.476
Atomic orbital electron populations
1.22173 0.91833 1.03375 1.04278 1.18854 0.95368 0.96892 0.76797
0.83006 1.29854 0.93319 0.93814 0.94748 1.81114 1.08598 1.08938
1.11970 1.47709 1.49903 1.12365 1.22693 1.22174 0.74804 0.90960
0.80152 1.90382 1.50155 1.67887 1.31149 1.18963 0.96122 0.84434
0.99970 0.93039 1.22004 0.94776 1.03979 0.99257 1.21083 1.23773
0.95937 1.13287 0.90686 1.24925 0.96571 0.96506 0.96054 1.69860
1.44089 1.04933 1.34546 0.86453 0.81252 0.77548 0.81977 1.20708
1.21259 1.19717 1.21570 0.98840 0.82316 1.01157 1.23861 1.02128
1.03253 0.93276 1.23210 0.97711 0.98033 1.04068 0.91716 0.89456
0.90516 0.88872 0.95887 0.94260 0.92861 0.86204 0.84028 0.89874
0.89400 0.88524
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.57 8.68 37.15 0.32 -1.25 16
2 C 0.23 3.16 2.14 -70.72 -0.15 3.01 16
3 H 0.15 2.21 4.41 -51.93 -0.23 1.98 16
4 C 0.20 3.08 14.52 -20.76 -0.30 2.78 16
5 N -0.43 -7.34 18.54 42.15 0.78 -6.56 16
6 N -0.59 -9.80 2.70 -161.77 -0.44 -10.24 16
7 C 0.53 11.04 6.81 -10.99 -0.07 10.96 16
8 O -0.52 -12.24 11.22 5.55 0.06 -12.17 16
9 C 0.03 0.60 1.79 -92.92 -0.17 0.43 16
10 H 0.05 1.23 7.49 -51.93 -0.39 0.84 16
11 C -0.14 -2.89 8.38 37.16 0.31 -2.58 16
12 C -0.50 -13.46 8.37 -34.44 -0.29 -13.75 16
13 H 0.08 2.13 6.76 -52.49 -0.35 1.77 16
14 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16
15 N -0.90 -23.89 11.38 55.43 0.63 -23.26 16
16 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16
17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16
20 C 0.07 0.97 5.82 -67.93 -0.40 0.58 16
21 C -0.19 -2.90 9.63 -26.73 -0.26 -3.16 16
22 C -0.19 -2.97 9.88 -26.73 -0.26 -3.23 16
23 H 0.06 0.58 6.78 -51.93 -0.35 0.23 16
24 H 0.09 0.86 7.32 -51.93 -0.38 0.48 16
25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
26 H 0.09 2.11 6.24 -51.93 -0.32 1.78 16
27 H 0.02 0.36 4.21 -51.93 -0.22 0.14 16
28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16
29 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16
30 H 0.12 1.43 6.81 -51.93 -0.35 1.08 16
31 H 0.14 2.68 5.17 -52.28 -0.27 2.41 16
32 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16
33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16
34 H 0.10 1.77 7.64 -51.93 -0.40 1.37 16
LS Contribution 279.72 15.07 4.22 4.22
Total: -1.00 -29.42 279.72 -5.22 -34.64
By element:
Atomic # 1 Polarization: 6.06 SS G_CDS: -4.09 Total: 1.97 kcal
Atomic # 6 Polarization: -3.34 SS G_CDS: -1.36 Total: -4.70 kcal
Atomic # 7 Polarization: -41.04 SS G_CDS: 0.98 Total: -40.06 kcal
Atomic # 8 Polarization: -12.24 SS G_CDS: 0.06 Total: -12.17 kcal
Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal
Total LS contribution 4.22 Total: 4.22 kcal
Total: -29.42 -5.22 -34.64 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598137780.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.070 kcal
(2) G-P(sol) polarization free energy of solvation -29.416 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.220 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.636 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.434 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds