Wall clock time and date at job start Mon Mar 30 2020 03:41:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 H 1.09001 * 109.47674 * 2 1
4 4 C 1.47205 * 109.47395 * 240.00061 * 2 1 3
5 5 N 2.60803 * 109.47071 * 240.00093 * 2 1 3
6 6 N 1.46505 * 109.47225 * 120.00071 * 2 1 3
7 7 C 1.34772 * 119.99786 * 236.89445 * 6 2 1
8 8 O 1.21287 * 119.99785 * 185.02529 * 7 6 2
9 9 C 1.50698 * 120.00409 * 5.03295 * 7 6 2
10 10 H 1.09005 * 109.46806 * 302.66060 * 9 7 6
11 11 C 1.53001 * 109.47501 * 62.65844 * 9 7 6
12 12 C 1.50698 * 109.47387 * 182.65875 * 9 7 6
13 13 H 1.08001 * 119.99942 * 359.97438 * 12 9 7
14 14 C 1.37878 * 120.00254 * 179.97438 * 12 9 7
15 15 N 1.31516 * 119.99831 * 0.02562 * 14 12 9
16 16 Si 1.86793 * 120.00190 * 180.02562 * 14 12 9
17 17 H 1.48508 * 109.47364 * 90.00125 * 16 14 12
18 18 H 1.48508 * 109.47380 * 210.00067 * 16 14 12
19 19 H 1.48504 * 109.47420 * 330.00085 * 16 14 12
20 20 C 1.46500 * 119.99963 * 56.90078 * 6 2 1
21 21 C 1.52999 * 117.49738 * 196.19888 * 20 6 2
22 22 C 1.52994 * 117.50036 * 127.57222 * 20 6 2
23 23 H 1.09006 * 109.47002 * 180.02562 * 1 2 3
24 24 H 1.09002 * 109.47348 * 300.00047 * 1 2 3
25 25 H 1.09001 * 109.47133 * 60.00065 * 1 2 3
26 26 H 1.08996 * 109.47398 * 185.66656 * 11 9 7
27 27 H 1.09004 * 109.46692 * 305.66603 * 11 9 7
28 28 H 1.09001 * 109.46998 * 65.65603 * 11 9 7
29 29 H 0.97003 * 119.99983 * 180.02562 * 15 14 12
30 30 H 1.08998 * 115.54671 * 341.89655 * 20 6 2
31 31 H 1.08997 * 117.49738 * 359.97438 * 21 20 6
32 32 H 1.08997 * 117.50307 * 145.01732 * 21 20 6
33 33 H 1.08998 * 117.49903 * 214.97520 * 22 20 6
34 34 H 1.09003 * 117.50288 * 359.97438 * 22 20 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0207 -0.6939 -1.2019
5 7 2.3992 -1.2294 -2.1295
6 7 2.0183 -0.6906 1.1962
7 6 2.8439 -0.0553 2.0512
8 8 3.3208 -0.6545 2.9918
9 6 3.1746 1.3995 1.8387
10 1 3.6105 1.5321 0.8485
11 6 1.8972 2.2344 1.9496
12 6 4.1607 1.8488 2.8860
13 1 4.5125 1.1507 3.6312
14 6 4.6138 3.1509 2.8928
15 7 4.1851 4.0011 1.9856
16 14 5.8367 3.7076 4.1905
17 1 7.2192 3.4912 3.6932
18 1 5.6334 5.1508 4.4756
19 1 5.6298 2.9233 5.4345
20 6 1.6093 -2.0719 1.4628
21 6 1.8247 -2.6117 2.8781
22 6 2.7134 -3.0964 1.7308
23 1 -0.3633 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8900
25 1 -0.3633 0.5138 -0.8900
26 1 2.1179 3.2715 1.6971
27 1 1.1475 1.8445 1.2610
28 1 1.5161 2.1817 2.9694
29 1 4.5041 4.9172 1.9902
30 1 0.7262 -2.4132 0.9227
31 1 2.2712 -1.9393 3.6107
32 1 1.0834 -3.3084 3.2694
33 1 2.5567 -4.1120 1.3673
34 1 3.7443 -2.7430 1.7083
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000598137780.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:41:57
Heat of formation + Delta-G solvation = 17.914950 kcal
Electronic energy + Delta-G solvation = -17207.812012 eV
Core-core repulsion = 14527.990561 eV
Total energy + Delta-G solvation = -2679.821451 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-41.56492 -38.29504 -37.38025 -36.25042 -35.17371 -32.29632 -31.21361 -27.21837
-25.43453 -25.13081 -23.30197 -22.90367 -20.41938 -19.11303 -18.31713 -17.62583
-16.69483 -16.62528 -16.01179 -15.42269 -15.15971 -14.82759 -14.63408 -14.47268
-14.02150 -13.75428 -13.36967 -13.13402 -12.97596 -12.84465 -12.72074 -12.45138
-12.42540 -12.17614 -12.03401 -11.97426 -11.82460 -11.26221 -10.99768 -10.51032
-10.00995 -9.52373 -8.13366 -6.21701 1.26408 1.41368 1.43655 1.54278
1.66648 1.78063 2.27558 2.47623 2.76303 3.07316 3.18120 3.76351
3.96322 4.00329 4.09968 4.20334 4.29284 4.61392 4.79158 4.81558
4.88626 4.93518 4.98786 5.07076 5.12974 5.35488 5.40443 5.54007
5.78239 5.79570 5.97820 6.21772 6.39121 6.49489 6.85379 7.39064
7.48087 8.92636
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.026642 B = 0.008340 C = 0.007227
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1050.727984 B = 3356.369744 C = 3873.569785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C 0.225 3.775
3 H 0.145 0.855
4 C 0.221 3.779
5 N -0.461 5.461
6 N -0.586 5.586
7 C 0.526 3.474
8 O -0.555 6.555
9 C 0.022 3.978
10 H 0.039 0.961
11 C -0.128 4.128
12 C -0.527 4.527
13 H 0.048 0.952
14 C 0.024 3.976
15 N -0.907 5.907
16 Si 0.949 3.051
17 H -0.280 1.280
18 H -0.275 1.275
19 H -0.279 1.279
20 C 0.069 3.931
21 C -0.189 4.189
22 C -0.198 4.198
23 H 0.082 0.918
24 H 0.093 0.907
25 H 0.102 0.898
26 H 0.071 0.929
27 H 0.070 0.930
28 H 0.027 0.973
29 H 0.265 0.735
30 H 0.164 0.836
31 H 0.104 0.896
32 H 0.118 0.882
33 H 0.117 0.883
34 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.064 -6.756 -3.233 13.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C 0.119 3.881
3 H 0.162 0.838
4 C -0.099 4.099
5 N -0.138 5.138
6 N -0.318 5.318
7 C 0.317 3.683
8 O -0.432 6.432
9 C 0.001 3.999
10 H 0.057 0.943
11 C -0.186 4.186
12 C -0.566 4.566
13 H 0.067 0.933
14 C -0.176 4.176
15 N -0.546 5.546
16 Si 0.775 3.225
17 H -0.206 1.206
18 H -0.200 1.200
19 H -0.204 1.204
20 C -0.035 4.035
21 C -0.226 4.226
22 C -0.237 4.237
23 H 0.101 0.899
24 H 0.112 0.888
25 H 0.120 0.880
26 H 0.089 0.911
27 H 0.088 0.912
28 H 0.046 0.954
29 H 0.074 0.926
30 H 0.181 0.819
31 H 0.122 0.878
32 H 0.136 0.864
33 H 0.136 0.864
34 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -10.215 -7.664 -4.166 13.433
hybrid contribution 1.192 0.582 1.007 1.666
sum -9.023 -7.082 -3.159 11.897
Atomic orbital electron populations
1.22235 0.87875 1.05171 1.05865 1.19175 0.98156 0.95781 0.75022
0.83811 1.29985 0.92353 0.93050 0.94481 1.81144 1.09607 1.09981
1.13066 1.47564 1.48518 1.13283 1.22470 1.21736 0.75546 0.90397
0.80574 1.90406 1.51650 1.68327 1.32851 1.18883 0.96517 0.86606
0.97923 0.94319 1.21817 0.94680 1.02329 0.99734 1.21249 1.25353
0.95953 1.14008 0.93329 1.25488 0.97880 0.96555 0.97648 1.69928
1.44477 1.05050 1.35139 0.85699 0.79474 0.77527 0.79785 1.20603
1.19976 1.20377 1.21993 0.99642 0.80729 1.01116 1.23720 1.02755
1.03377 0.92734 1.23192 0.95918 0.99687 1.04883 0.89911 0.88810
0.87964 0.91069 0.91158 0.95412 0.92621 0.81928 0.87809 0.86428
0.86446 0.92308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.36 8.68 71.98 0.62 -1.74 16
2 C 0.23 5.66 2.14 43.18 0.09 5.75 16
3 H 0.14 3.91 4.41 -2.39 -0.01 3.90 16
4 C 0.22 6.24 14.52 89.44 1.30 7.53 16
5 N -0.46 -14.98 18.54 20.01 0.37 -14.61 16
6 N -0.59 -18.48 2.70 -784.12 -2.12 -20.60 16
7 C 0.53 22.27 6.81 87.66 0.60 22.87 16
8 O -0.55 -27.04 11.22 -3.05 -0.03 -27.07 16
9 C 0.02 1.01 1.79 -12.29 -0.02 0.99 16
10 H 0.04 1.89 7.49 -2.38 -0.02 1.87 16
11 C -0.13 -5.13 8.38 71.98 0.60 -4.53 16
12 C -0.53 -29.14 8.37 25.60 0.21 -28.92 16
13 H 0.05 2.89 6.76 -2.91 -0.02 2.87 16
14 C 0.02 1.29 5.30 84.65 0.45 1.74 16
15 N -0.91 -48.66 11.38 21.45 0.24 -48.42 16
16 Si 0.95 43.87 29.54 68.60 2.03 45.90 16
17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16
18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16
19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16
20 C 0.07 1.85 5.82 44.99 0.26 2.11 16
21 C -0.19 -5.52 9.63 30.60 0.29 -5.23 16
22 C -0.20 -5.89 9.88 30.59 0.30 -5.59 16
23 H 0.08 1.04 6.78 -2.38 -0.02 1.02 16
24 H 0.09 1.41 7.32 -2.39 -0.02 1.39 16
25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16
26 H 0.07 3.20 6.24 -2.39 -0.01 3.18 16
27 H 0.07 2.08 4.21 -2.39 -0.01 2.07 16
28 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.26 13.54 8.31 -92.71 -0.77 12.76 16
30 H 0.16 3.04 6.81 -2.39 -0.02 3.02 16
31 H 0.10 3.99 5.17 -7.92 -0.04 3.95 16
32 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16
33 H 0.12 2.76 8.14 -2.39 -0.02 2.74 16
34 H 0.06 2.20 7.64 -2.39 -0.02 2.19 16
Total: -1.00 -66.18 279.72 6.29 -59.88
By element:
Atomic # 1 Polarization: 8.84 SS G_CDS: 1.09 Total: 9.93 kcal
Atomic # 6 Polarization: -9.73 SS G_CDS: 4.72 Total: -5.01 kcal
Atomic # 7 Polarization: -82.12 SS G_CDS: -1.50 Total: -83.63 kcal
Atomic # 8 Polarization: -27.04 SS G_CDS: -0.03 Total: -27.07 kcal
Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal
Total: -66.18 6.29 -59.88 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000598137780.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.797 kcal
(2) G-P(sol) polarization free energy of solvation -66.177 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.620 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.915 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds