Wall clock time and date at job start Mon Mar 30 2020 03:04:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30995 * 1
3 3 C 1.50707 * 119.99951 * 2 1
4 4 N 1.46893 * 109.47300 * 124.99441 * 3 2 1
5 5 C 1.46904 * 110.99907 * 288.40128 * 4 3 2
6 6 C 1.50700 * 109.46861 * 160.65116 * 5 4 3
7 7 H 1.08006 * 120.00226 * 4.53726 * 6 5 4
8 8 C 1.37881 * 119.99785 * 184.53724 * 6 5 4
9 9 N 1.31516 * 119.99511 * 179.97438 * 8 6 5
10 10 Si 1.86798 * 120.00169 * 359.97438 * 8 6 5
11 11 H 1.48508 * 109.46973 * 89.99908 * 10 8 6
12 12 H 1.48494 * 109.47290 * 210.00250 * 10 8 6
13 13 H 1.48500 * 109.47147 * 330.00236 * 10 8 6
14 14 C 1.46904 * 110.99722 * 164.45081 * 4 3 2
15 15 C 1.50694 * 109.47131 * 293.95227 * 14 4 3
16 16 C 1.34326 * 126.44495 * 90.02449 * 15 14 4
17 17 N 1.34476 * 107.67251 * 179.97438 * 16 15 14
18 18 C 1.30256 * 108.69832 * 359.97438 * 17 16 15
19 19 C 1.50703 * 125.61821 * 179.97438 * 18 17 16
20 20 O 1.33968 * 108.76278 * 0.02562 * 18 17 16
21 21 H 1.07999 * 119.99828 * 180.02562 * 1 2 3
22 22 H 1.08002 * 120.00274 * 0.02562 * 1 2 3
23 23 H 1.08002 * 120.00274 * 179.97438 * 2 1 3
24 24 H 1.09002 * 109.46726 * 4.98873 * 3 2 1
25 25 H 1.09005 * 109.46573 * 244.99794 * 3 2 1
26 26 H 1.09000 * 109.47076 * 280.65115 * 5 4 3
27 27 H 1.08998 * 109.46963 * 40.65307 * 5 4 3
28 28 H 0.97007 * 119.99219 * 179.97438 * 9 8 6
29 29 H 1.09004 * 109.46825 * 173.95201 * 14 4 3
30 30 H 1.09004 * 109.47183 * 53.95253 * 14 4 3
31 31 H 1.07999 * 126.16764 * 359.95780 * 16 15 14
32 32 H 1.08993 * 109.47459 * 270.02556 * 19 18 17
33 33 H 1.08999 * 109.47347 * 30.03402 * 19 18 17
34 34 H 1.09008 * 109.46646 * 150.02745 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.0635 1.3052 0.0000
4 7 2.9961 1.3321 1.1345
5 6 2.2747 1.4800 2.4057
6 6 3.1613 1.0368 3.5408
7 1 4.1846 0.7505 3.3469
8 6 2.6663 0.9968 4.8271
9 7 3.4399 0.6096 5.8176
10 14 0.8968 1.4926 5.1627
11 1 0.0192 0.2996 5.0531
12 1 0.7927 2.0598 6.5311
13 1 0.4718 2.5125 4.1705
14 6 3.9953 2.3963 0.9694
15 6 4.8762 2.0794 -0.2115
16 6 4.6653 2.4475 -1.4860
17 7 5.6812 1.9656 -2.2236
18 6 6.4973 1.3208 -1.4395
19 6 7.7642 0.6276 -1.8703
20 8 6.0243 1.3743 -0.1872
21 1 -0.5400 -0.9353 0.0004
22 1 -0.5401 0.9353 -0.0004
23 1 1.8500 -0.9353 0.0004
24 1 1.3585 2.1317 0.0894
25 1 2.6213 1.4026 -0.9314
26 1 1.9982 2.5248 2.5471
27 1 1.3748 0.8653 2.3863
28 1 3.0916 0.5818 6.7226
29 1 4.6055 2.4647 1.8700
30 1 3.4892 3.3469 0.8004
31 1 3.8301 3.0260 -1.8524
32 1 7.5407 -0.4055 -2.1364
33 1 8.1845 1.1426 -2.7341
34 1 8.4839 0.6444 -1.0517
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000600161536.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:01
Heat of formation + Delta-G solvation = 50.931210 kcal
Electronic energy + Delta-G solvation = -16542.252091 eV
Core-core repulsion = 13863.862333 eV
Total energy + Delta-G solvation = -2678.389758 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.05491 -37.48476 -34.47825 -33.40211 -32.72235 -31.72892 -29.15539 -27.59578
-25.63383 -23.42041 -22.03091 -20.99731 -20.35837 -19.34805 -16.92601 -16.70533
-16.49811 -15.26658 -14.96613 -14.60074 -13.99820 -13.82754 -13.58751 -13.18886
-13.00728 -12.85837 -12.55491 -12.38569 -11.84052 -11.55379 -11.39221 -11.02561
-10.74584 -10.61720 -10.57652 -10.24837 -9.98690 -9.39841 -9.04173 -8.60331
-8.41565 -7.58608 -6.08827 -4.06697 1.69936 2.62120 2.86132 2.94063
3.25749 3.33326 3.34275 4.23416 4.38239 4.71637 5.03726 5.18989
5.23396 5.29845 5.35842 5.41529 5.49891 5.58047 5.64770 5.80269
5.94361 5.96399 6.11297 6.22621 6.42888 6.53758 6.73100 6.77403
6.94937 7.05212 7.52361 7.74358 7.83577 7.96066 8.58728 9.00484
9.52211 11.04269
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.024724 B = 0.007126 C = 0.005995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1132.230719 B = 3928.406761 C = 4669.801603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.121 4.121
3 C 0.067 3.933
4 N -0.520 5.520
5 C 0.164 3.836
6 C -0.511 4.511
7 H 0.081 0.919
8 C 0.070 3.930
9 N -0.898 5.898
10 Si 0.873 3.127
11 H -0.275 1.275
12 H -0.286 1.286
13 H -0.268 1.268
14 C 0.137 3.863
15 C -0.006 4.006
16 C -0.057 4.057
17 N -0.487 5.487
18 C 0.172 3.828
19 C -0.053 4.053
20 O -0.188 6.188
21 H 0.095 0.905
22 H 0.091 0.909
23 H 0.111 0.889
24 H 0.033 0.967
25 H 0.076 0.924
26 H -0.008 1.008
27 H 0.033 0.967
28 H 0.264 0.736
29 H 0.109 0.891
30 H 0.062 0.938
31 H 0.178 0.822
32 H 0.089 0.911
33 H 0.096 0.904
34 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.597 2.240 -13.564 13.840
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.246 4.246
2 C -0.140 4.140
3 C -0.060 4.060
4 N -0.244 5.244
5 C 0.039 3.961
6 C -0.549 4.549
7 H 0.099 0.901
8 C -0.132 4.132
9 N -0.537 5.537
10 Si 0.700 3.300
11 H -0.201 1.201
12 H -0.211 1.211
13 H -0.193 1.193
14 C 0.009 3.991
15 C -0.061 4.061
16 C -0.196 4.196
17 N -0.218 5.218
18 C -0.034 4.034
19 C -0.111 4.111
20 O -0.073 6.073
21 H 0.113 0.887
22 H 0.109 0.891
23 H 0.129 0.871
24 H 0.051 0.949
25 H 0.094 0.906
26 H 0.009 0.991
27 H 0.051 0.949
28 H 0.074 0.926
29 H 0.127 0.873
30 H 0.079 0.921
31 H 0.195 0.805
32 H 0.108 0.892
33 H 0.114 0.886
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges 1.975 1.808 -13.932 14.187
hybrid contribution -1.634 0.860 1.048 2.123
sum 0.342 2.669 -12.884 13.162
Atomic orbital electron populations
1.23723 0.95915 1.01339 1.03598 1.22857 0.95362 0.98771 0.96992
1.21390 0.94543 0.94639 0.95449 1.61905 1.14904 1.44834 1.02780
1.20228 0.94624 0.95013 0.86241 1.21019 0.99888 1.44482 0.89558
0.90102 1.24882 0.97328 0.94846 0.96111 1.69897 1.36057 1.47696
1.00037 0.86894 0.85933 0.79383 0.77755 1.20056 1.21141 1.19312
1.20474 0.92103 0.92756 0.93813 1.23680 0.87208 0.96593 0.98587
1.22948 1.00277 1.06563 0.89825 1.70352 1.03900 1.13175 1.34335
1.26178 0.99071 1.00299 0.77901 1.20175 0.88550 0.99811 1.02529
1.84458 1.33090 1.57047 1.32740 0.88668 0.89110 0.87066 0.94933
0.90562 0.99054 0.94901 0.92610 0.87327 0.92066 0.80514 0.89213
0.88578 0.89479
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.21 -3.10 14.32 29.02 0.42 -2.69 16
2 C -0.12 -2.04 8.73 -36.02 -0.31 -2.35 16
3 C 0.07 1.16 5.28 -4.98 -0.03 1.13 16
4 N -0.52 -10.65 4.37 -238.95 -1.04 -11.69 16
5 C 0.16 3.88 3.65 -4.97 -0.02 3.86 16
6 C -0.51 -14.29 9.15 -34.44 -0.32 -14.61 16
7 H 0.08 2.49 7.89 -52.48 -0.41 2.07 16
8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16
9 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16
10 Si 0.87 21.21 27.38 -169.99 -4.65 16.56 16
11 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16
12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
13 H -0.27 -6.24 6.67 56.52 0.38 -5.86 16
14 C 0.14 2.51 5.34 -4.98 -0.03 2.48 16
15 C -0.01 -0.11 6.32 -35.69 -0.23 -0.33 16
16 C -0.06 -0.90 10.15 -17.77 -0.18 -1.08 16
17 N -0.49 -7.91 11.29 -11.10 -0.13 -8.04 16
18 C 0.17 2.61 8.34 -12.94 -0.11 2.51 16
19 C -0.05 -0.51 10.51 36.01 0.38 -0.14 16
20 O -0.19 -3.37 10.78 5.35 0.06 -3.31 16
21 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16
22 H 0.09 1.27 7.84 -52.49 -0.41 0.86 16
23 H 0.11 1.91 8.06 -52.49 -0.42 1.48 16
24 H 0.03 0.53 7.71 -51.93 -0.40 0.13 16
25 H 0.08 1.21 5.55 -51.93 -0.29 0.93 16
26 H -0.01 -0.19 7.38 -51.93 -0.38 -0.57 16
27 H 0.03 0.79 6.29 -51.93 -0.33 0.46 16
28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16
29 H 0.11 2.21 7.30 -51.93 -0.38 1.83 16
30 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16
31 H 0.18 2.31 7.95 -52.49 -0.42 1.89 16
32 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16
33 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16
LS Contribution 290.81 15.07 4.38 4.38
Total: -1.00 -32.00 290.81 -5.84 -37.84
By element:
Atomic # 1 Polarization: 4.79 SS G_CDS: -4.71 Total: 0.07 kcal
Atomic # 6 Polarization: -8.80 SS G_CDS: -0.52 Total: -9.32 kcal
Atomic # 7 Polarization: -45.83 SS G_CDS: -0.40 Total: -46.22 kcal
Atomic # 8 Polarization: -3.37 SS G_CDS: 0.06 Total: -3.31 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -4.65 Total: 16.56 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -32.00 -5.84 -37.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600161536.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.775 kcal
(2) G-P(sol) polarization free energy of solvation -32.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.774 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.843 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.931 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds