Wall clock time and date at job start Mon Mar 30 2020 03:38:16
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.47612 * 2 1
4 4 C 1.50703 * 109.47549 * 120.00138 * 2 1 3
5 5 H 1.07996 * 120.00265 * 119.99568 * 4 2 1
6 6 C 1.37877 * 119.99303 * 300.00005 * 4 2 1
7 7 N 1.31513 * 120.00437 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99678 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47162 * 359.97438 * 8 6 4
10 10 H 1.48495 * 109.47657 * 119.99650 * 8 6 4
11 11 H 1.48507 * 109.46924 * 239.99841 * 8 6 4
12 12 N 1.46508 * 109.47142 * 239.99765 * 2 1 3
13 13 N 1.39489 * 124.59282 * 299.98032 * 12 2 1
14 14 C 1.26269 * 113.22283 * 182.89640 * 13 12 2
15 15 C 1.51251 * 149.66234 * 196.04810 * 14 13 12
16 16 H 1.08999 * 110.25993 * 20.69743 * 15 14 13
17 17 C 1.53010 * 110.19011 * 258.88318 * 15 14 13
18 18 C 1.54607 * 105.76415 * 139.80821 * 15 14 13
19 19 C 1.55154 * 105.83317 * 3.86040 * 18 15 14
20 20 C 1.53040 * 106.55299 * 5.56685 * 14 13 12
21 21 H 1.09002 * 112.13272 * 110.39022 * 20 14 13
22 22 C 1.37498 * 124.29155 * 120.57618 * 12 2 1
23 23 O 1.21294 * 128.73146 * 349.08019 * 22 12 2
24 24 H 1.09006 * 109.46553 * 299.99953 * 1 2 3
25 25 H 1.09000 * 109.47114 * 59.99814 * 1 2 3
26 26 H 1.08994 * 109.47223 * 180.02562 * 1 2 3
27 27 H 0.97001 * 119.99669 * 179.97438 * 7 6 4
28 28 H 1.08997 * 109.46453 * 302.20926 * 17 15 14
29 29 H 1.09001 * 109.46825 * 62.20749 * 17 15 14
30 30 H 1.08996 * 109.47069 * 182.20909 * 17 15 14
31 31 H 1.08990 * 110.17766 * 244.76775 * 18 15 14
32 32 H 1.08998 * 110.23841 * 122.98543 * 18 15 14
33 33 H 1.08999 * 110.78905 * 265.11820 * 19 18 15
34 34 H 1.08997 * 110.79061 * 141.66448 * 19 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6533 -1.5885 1.1313
6 6 1.6993 -0.2393 2.4827
7 7 0.9436 0.8302 2.6033
8 14 2.3227 -1.1194 4.0079
9 1 3.1476 -2.2862 3.6038
10 1 3.1475 -0.1857 4.8160
11 1 1.1680 -1.5865 4.8166
12 7 2.0184 -0.6907 -1.1962
13 7 1.7414 -2.0211 -1.5111
14 6 2.3184 -2.4142 -2.5632
15 6 2.4458 -3.4228 -3.6831
16 1 1.5173 -3.9829 -3.7941
17 6 3.6078 -4.3782 -3.4036
18 6 2.7279 -2.5987 -4.9604
19 6 2.8501 -1.1239 -4.4943
20 6 3.2315 -1.2714 -3.0127
21 1 4.2866 -1.5154 -2.8881
22 6 2.8214 -0.1126 -2.1509
23 8 3.1143 1.0562 -2.2898
24 1 -0.3633 0.5139 0.8901
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 -1.0276 0.0005
27 1 0.7090 1.1614 3.4844
28 1 4.5286 -3.8064 -3.2888
29 1 3.4087 -4.9342 -2.4875
30 1 3.7138 -5.0745 -4.2355
31 1 1.9029 -2.7032 -5.6650
32 1 3.6596 -2.9257 -5.4220
33 1 1.8973 -0.6050 -4.5987
34 1 3.6355 -0.6076 -5.0463
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601935150.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:16
Heat of formation + Delta-G solvation = 20.483775 kcal
Electronic energy + Delta-G solvation = -17063.522548 eV
Core-core repulsion = 14383.812491 eV
Total energy + Delta-G solvation = -2679.710058 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-41.01177 -37.40246 -36.18111 -33.98742 -31.29150 -31.07845 -28.30852 -27.13455
-25.23651 -24.33662 -22.19141 -20.27381 -20.09091 -18.62317 -16.52240 -16.10472
-15.67290 -15.08041 -14.74420 -14.08769 -13.92749 -13.54141 -13.08462 -12.86089
-12.64060 -12.42784 -11.88268 -11.74619 -11.51352 -11.33955 -11.17104 -10.88015
-10.84758 -10.70947 -10.63821 -10.35017 -10.23385 -9.79037 -9.29261 -8.77270
-8.50354 -7.69706 -6.12280 -4.19504 2.15365 2.97338 3.25646 3.27781
3.33542 3.40119 4.02160 4.37484 4.38494 4.83602 4.93130 5.05631
5.08991 5.19421 5.29834 5.43418 5.49491 5.60402 5.70523 5.83735
5.96480 6.01390 6.12439 6.23080 6.51324 6.79313 6.90268 6.97577
7.22900 7.56023 7.72507 7.94482 8.10435 8.52488 8.60745 8.87592
9.46089 10.93453
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032072 B = 0.007476 C = 0.006715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.817613 B = 3744.253795 C = 4168.465052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.284 3.716
3 H 0.064 0.936
4 C -0.521 4.521
5 H 0.062 0.938
6 C 0.064 3.936
7 N -0.890 5.890
8 Si 0.904 3.096
9 H -0.273 1.273
10 H -0.283 1.283
11 H -0.281 1.281
12 N -0.445 5.445
13 N -0.171 5.171
14 C 0.043 3.957
15 C 0.009 3.991
16 H 0.091 0.909
17 C -0.141 4.141
18 C -0.117 4.117
19 C -0.092 4.092
20 C -0.187 4.187
21 H 0.128 0.872
22 C 0.499 3.501
23 O -0.506 6.506
24 H 0.096 0.904
25 H 0.010 0.990
26 H 0.041 0.959
27 H 0.264 0.736
28 H 0.059 0.941
29 H 0.063 0.937
30 H 0.065 0.935
31 H 0.075 0.925
32 H 0.079 0.921
33 H 0.072 0.928
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.052 -9.005 -13.355 16.394
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.187 3.813
3 H 0.081 0.919
4 C -0.559 4.559
5 H 0.081 0.919
6 C -0.139 4.139
7 N -0.529 5.529
8 Si 0.731 3.269
9 H -0.198 1.198
10 H -0.209 1.209
11 H -0.207 1.207
12 N -0.266 5.266
13 N 0.026 4.974
14 C -0.152 4.152
15 C -0.012 4.012
16 H 0.110 0.890
17 C -0.200 4.200
18 C -0.155 4.155
19 C -0.130 4.130
20 C -0.211 4.211
21 H 0.145 0.855
22 C 0.287 3.713
23 O -0.380 6.380
24 H 0.115 0.885
25 H 0.029 0.971
26 H 0.060 0.940
27 H 0.074 0.926
28 H 0.078 0.922
29 H 0.082 0.918
30 H 0.084 0.916
31 H 0.094 0.906
32 H 0.097 0.903
33 H 0.091 0.909
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges 2.455 -8.283 -12.336 15.060
hybrid contribution 0.916 -0.039 0.597 1.094
sum 3.371 -8.322 -11.738 14.779
Atomic orbital electron populations
1.22056 0.97167 1.00464 1.00675 1.19117 0.92057 0.91798 0.78372
0.91893 1.21302 1.31930 1.12916 0.89793 0.91931 1.24896 0.94892
0.95015 0.99050 1.69879 1.36403 1.22681 1.23916 0.86344 0.78660
0.79545 0.82323 1.19756 1.20867 1.20722 1.51630 1.47439 1.03814
1.23739 1.73716 1.15632 0.96555 1.11466 1.25314 0.96718 0.98159
0.95011 1.20107 1.00469 0.92772 0.87809 0.89038 1.21834 0.97266
0.98547 1.02315 1.22672 1.02613 0.93988 0.96222 1.21911 1.02332
0.96875 0.91924 1.22972 1.03138 0.97006 0.97991 0.85473 1.21311
0.78400 0.88876 0.82740 1.90680 1.57580 1.16986 1.72755 0.88539
0.97056 0.94011 0.92558 0.92210 0.91771 0.91574 0.90577 0.90279
0.90933 0.90279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.71 9.19 37.16 0.34 -3.37 16
2 C 0.28 7.70 3.00 -69.08 -0.21 7.49 16
3 H 0.06 1.88 7.81 -51.93 -0.41 1.47 16
4 C -0.52 -14.82 8.72 -34.44 -0.30 -15.12 16
5 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16
6 C 0.06 1.78 5.30 -17.82 -0.09 1.69 16
7 N -0.89 -25.49 11.32 55.43 0.63 -24.86 16
8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16
9 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16
11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
12 N -0.45 -10.69 3.30 -54.43 -0.18 -10.87 16
13 N -0.17 -3.63 11.74 34.20 0.40 -3.23 16
14 C 0.04 0.71 7.77 -78.16 -0.61 0.11 16
15 C 0.01 0.10 3.42 -90.65 -0.31 -0.21 16
16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16
17 C -0.14 -1.27 8.99 37.16 0.33 -0.94 16
18 C -0.12 -1.05 6.54 -24.75 -0.16 -1.21 16
19 C -0.09 -1.14 6.43 -25.23 -0.16 -1.31 16
20 C -0.19 -3.06 3.36 -91.67 -0.31 -3.37 16
21 H 0.13 1.89 7.91 -51.93 -0.41 1.48 16
22 C 0.50 11.16 7.97 -10.02 -0.08 11.08 16
23 O -0.51 -12.63 17.74 5.55 0.10 -12.54 16
24 H 0.10 2.61 6.07 -51.93 -0.32 2.30 16
25 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16
26 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16
27 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
28 H 0.06 0.55 7.84 -51.93 -0.41 0.14 16
29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16
31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.08 0.55 7.71 -51.93 -0.40 0.15 16
33 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16
34 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
LS Contribution 284.22 15.07 4.28 4.28
Total: -1.00 -32.13 284.22 -6.21 -38.34
By element:
Atomic # 1 Polarization: 2.28 SS G_CDS: -4.86 Total: -2.58 kcal
Atomic # 6 Polarization: -3.61 SS G_CDS: -1.56 Total: -5.16 kcal
Atomic # 7 Polarization: -39.81 SS G_CDS: 0.85 Total: -38.96 kcal
Atomic # 8 Polarization: -12.63 SS G_CDS: 0.10 Total: -12.54 kcal
Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -32.13 -6.21 -38.34 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601935150.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.829 kcal
(2) G-P(sol) polarization free energy of solvation -32.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.694 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.345 kcal
(6) G-S(sol) free energy of system = (1) + (5) 20.484 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds