Wall clock time and date at job start Mon Mar 30 2020 03:38:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09004 * 109.47612 * 2 1
4 4 C 1.50703 * 109.47549 * 120.00138 * 2 1 3
5 5 H 1.07996 * 120.00265 * 119.99568 * 4 2 1
6 6 C 1.37877 * 119.99303 * 300.00005 * 4 2 1
7 7 N 1.31513 * 120.00437 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 119.99678 * 180.02562 * 6 4 2
9 9 H 1.48501 * 109.47162 * 359.97438 * 8 6 4
10 10 H 1.48495 * 109.47657 * 119.99650 * 8 6 4
11 11 H 1.48507 * 109.46924 * 239.99841 * 8 6 4
12 12 N 1.46508 * 109.47142 * 239.99765 * 2 1 3
13 13 N 1.39489 * 124.59282 * 299.98032 * 12 2 1
14 14 C 1.26269 * 113.22283 * 182.89640 * 13 12 2
15 15 C 1.51251 * 149.66234 * 196.04810 * 14 13 12
16 16 H 1.08999 * 110.25993 * 20.69743 * 15 14 13
17 17 C 1.53010 * 110.19011 * 258.88318 * 15 14 13
18 18 C 1.54607 * 105.76415 * 139.80821 * 15 14 13
19 19 C 1.55154 * 105.83317 * 3.86040 * 18 15 14
20 20 C 1.53040 * 106.55299 * 5.56685 * 14 13 12
21 21 H 1.09002 * 112.13272 * 110.39022 * 20 14 13
22 22 C 1.37498 * 124.29155 * 120.57618 * 12 2 1
23 23 O 1.21294 * 128.73146 * 349.08019 * 22 12 2
24 24 H 1.09006 * 109.46553 * 299.99953 * 1 2 3
25 25 H 1.09000 * 109.47114 * 59.99814 * 1 2 3
26 26 H 1.08994 * 109.47223 * 180.02562 * 1 2 3
27 27 H 0.97001 * 119.99669 * 179.97438 * 7 6 4
28 28 H 1.08997 * 109.46453 * 302.20926 * 17 15 14
29 29 H 1.09001 * 109.46825 * 62.20749 * 17 15 14
30 30 H 1.08996 * 109.47069 * 182.20909 * 17 15 14
31 31 H 1.08990 * 110.17766 * 244.76775 * 18 15 14
32 32 H 1.08998 * 110.23841 * 122.98543 * 18 15 14
33 33 H 1.08999 * 110.78905 * 265.11820 * 19 18 15
34 34 H 1.08997 * 110.79061 * 141.66448 * 19 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.6533 -1.5885 1.1313
6 6 1.6993 -0.2393 2.4827
7 7 0.9436 0.8302 2.6033
8 14 2.3227 -1.1194 4.0079
9 1 3.1476 -2.2862 3.6038
10 1 3.1475 -0.1857 4.8160
11 1 1.1680 -1.5865 4.8166
12 7 2.0184 -0.6907 -1.1962
13 7 1.7414 -2.0211 -1.5111
14 6 2.3184 -2.4142 -2.5632
15 6 2.4458 -3.4228 -3.6831
16 1 1.5173 -3.9829 -3.7941
17 6 3.6078 -4.3782 -3.4036
18 6 2.7279 -2.5987 -4.9604
19 6 2.8501 -1.1239 -4.4943
20 6 3.2315 -1.2714 -3.0127
21 1 4.2866 -1.5154 -2.8881
22 6 2.8214 -0.1126 -2.1509
23 8 3.1143 1.0562 -2.2898
24 1 -0.3633 0.5139 0.8901
25 1 -0.3633 0.5139 -0.8900
26 1 -0.3633 -1.0276 0.0005
27 1 0.7090 1.1614 3.4844
28 1 4.5286 -3.8064 -3.2888
29 1 3.4087 -4.9342 -2.4875
30 1 3.7138 -5.0745 -4.2355
31 1 1.9029 -2.7032 -5.6650
32 1 3.6596 -2.9257 -5.4220
33 1 1.8973 -0.6050 -4.5987
34 1 3.6355 -0.6076 -5.0463
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601935150.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:15
Heat of formation + Delta-G solvation = -0.885336 kcal
Electronic energy + Delta-G solvation = -17064.449183 eV
Core-core repulsion = 14383.812491 eV
Total energy + Delta-G solvation = -2680.636692 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-42.49190 -38.93062 -37.74454 -35.87553 -33.19540 -32.17110 -30.05201 -28.32369
-27.42506 -25.32975 -23.85990 -21.70319 -21.58605 -20.01196 -18.52770 -17.80833
-17.20499 -16.76559 -16.17001 -15.80270 -15.15332 -14.78253 -14.70106 -14.31689
-14.03935 -13.83347 -13.43573 -13.18057 -13.08267 -12.85360 -12.78790 -12.44619
-12.39133 -12.32176 -12.22192 -11.65053 -11.51628 -11.37290 -11.27603 -10.67305
-10.39622 -9.47814 -8.26662 -6.43617 0.69176 1.35330 1.36086 1.39478
1.49115 1.68985 2.33959 2.66589 3.01517 3.23038 3.62096 3.87073
4.09988 4.14134 4.24061 4.44196 4.52730 4.63535 4.68633 4.75559
4.84309 4.96015 5.00525 5.06323 5.18292 5.25989 5.35427 5.41465
5.47212 5.54417 5.67723 5.82794 6.02337 6.56852 6.79830 7.04386
7.27059 8.78847
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032072 B = 0.007476 C = 0.006715
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 872.817613 B = 3744.253795 C = 4168.465052
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C 0.287 3.713
3 H 0.018 0.982
4 C -0.540 4.540
5 H 0.051 0.949
6 C 0.018 3.982
7 N -0.915 5.915
8 Si 0.973 3.027
9 H -0.271 1.271
10 H -0.275 1.275
11 H -0.269 1.269
12 N -0.466 5.466
13 N -0.230 5.230
14 C 0.078 3.922
15 C 0.009 3.991
16 H 0.112 0.888
17 C -0.140 4.140
18 C -0.101 4.101
19 C -0.091 4.091
20 C -0.182 4.182
21 H 0.150 0.850
22 C 0.477 3.523
23 O -0.552 6.552
24 H 0.078 0.922
25 H 0.018 0.982
26 H 0.041 0.959
27 H 0.270 0.730
28 H 0.058 0.942
29 H 0.050 0.950
30 H 0.103 0.897
31 H 0.101 0.899
32 H 0.113 0.887
33 H 0.055 0.945
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.953 -11.852 -15.249 19.714
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.187 3.813
3 H 0.036 0.964
4 C -0.578 4.578
5 H 0.069 0.931
6 C -0.182 4.182
7 N -0.554 5.554
8 Si 0.797 3.203
9 H -0.196 1.196
10 H -0.201 1.201
11 H -0.194 1.194
12 N -0.285 5.285
13 N -0.032 5.032
14 C -0.117 4.117
15 C -0.012 4.012
16 H 0.130 0.870
17 C -0.198 4.198
18 C -0.139 4.139
19 C -0.130 4.130
20 C -0.206 4.206
21 H 0.167 0.833
22 C 0.267 3.733
23 O -0.429 6.429
24 H 0.097 0.903
25 H 0.038 0.962
26 H 0.060 0.940
27 H 0.079 0.921
28 H 0.077 0.923
29 H 0.070 0.930
30 H 0.122 0.878
31 H 0.120 0.880
32 H 0.132 0.868
33 H 0.074 0.926
34 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 3.344 -11.159 -14.244 18.401
hybrid contribution 0.674 0.810 1.074 1.505
sum 4.018 -10.349 -13.170 17.224
Atomic orbital electron populations
1.21819 0.96468 1.00141 1.00089 1.18667 0.92547 0.90104 0.79951
0.96386 1.21412 1.32550 1.12869 0.90965 0.93110 1.25764 0.94833
0.95659 1.01988 1.69990 1.36831 1.23621 1.24940 0.85292 0.78408
0.78344 0.78286 1.19582 1.20093 1.19439 1.51507 1.48138 1.05650
1.23227 1.73741 1.19246 0.95345 1.14862 1.26716 0.93041 0.99076
0.92859 1.20627 1.02546 0.92247 0.85744 0.86956 1.21873 0.96000
0.98527 1.03366 1.22718 1.05577 0.90180 0.95379 1.22046 1.02073
0.99998 0.88834 1.23167 1.04044 0.93840 0.99553 0.83298 1.22348
0.77839 0.89831 0.83312 1.90624 1.59257 1.19074 1.73965 0.90341
0.96247 0.93953 0.92079 0.92292 0.93035 0.87806 0.88015 0.86823
0.92642 0.88368
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.81 9.19 71.98 0.66 -6.14 16
2 C 0.29 16.51 3.00 44.24 0.13 16.64 16
3 H 0.02 1.19 7.81 -2.38 -0.02 1.17 16
4 C -0.54 -32.01 8.72 25.60 0.22 -31.79 16
5 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16
6 C 0.02 1.00 5.30 84.65 0.45 1.45 16
7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16
8 Si 0.97 44.96 29.54 68.60 2.03 46.98 16
9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16
11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16
12 N -0.47 -23.42 3.30 -442.92 -1.46 -24.89 16
13 N -0.23 -9.92 11.74 -39.98 -0.47 -10.39 16
14 C 0.08 2.45 7.77 47.71 0.37 2.82 16
15 C 0.01 0.15 3.42 -10.81 -0.04 0.12 16
16 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16
17 C -0.14 -1.84 8.99 71.99 0.65 -1.19 16
18 C -0.10 -1.24 6.54 31.88 0.21 -1.03 16
19 C -0.09 -2.00 6.43 31.57 0.20 -1.79 16
20 C -0.18 -5.74 3.36 -11.47 -0.04 -5.78 16
21 H 0.15 4.10 7.91 -2.39 -0.02 4.08 16
22 C 0.48 22.16 7.97 87.04 0.69 22.85 16
23 O -0.55 -29.16 17.74 -3.07 -0.05 -29.21 16
24 H 0.08 4.46 6.07 -2.38 -0.01 4.45 16
25 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16
26 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16
27 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16
28 H 0.06 0.81 7.84 -2.39 -0.02 0.79 16
29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16
30 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16
31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16
32 H 0.11 0.76 7.71 -2.39 -0.02 0.74 16
33 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16
34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16
Total: -1.00 -75.94 284.22 4.88 -71.06
By element:
Atomic # 1 Polarization: 2.98 SS G_CDS: 1.08 Total: 4.06 kcal
Atomic # 6 Polarization: -7.36 SS G_CDS: 3.51 Total: -3.85 kcal
Atomic # 7 Polarization: -87.36 SS G_CDS: -1.69 Total: -89.05 kcal
Atomic # 8 Polarization: -29.16 SS G_CDS: -0.05 Total: -29.21 kcal
Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal
Total: -75.94 4.88 -71.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601935150.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.176 kcal
(2) G-P(sol) polarization free energy of solvation -75.942 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.766 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.881 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds