Wall clock time and date at job start Mon Mar 30 2020 03:42:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47301 * 2 1
4 4 C 1.50699 * 109.46835 * 120.00050 * 2 1 3
5 5 H 1.08001 * 120.00327 * 114.36149 * 4 2 1
6 6 C 1.37881 * 120.00093 * 294.35964 * 4 2 1
7 7 N 1.31510 * 120.00280 * 156.91459 * 6 4 2
8 8 Si 1.86803 * 119.99774 * 336.91098 * 6 4 2
9 9 H 1.48500 * 109.47094 * 180.02562 * 8 6 4
10 10 H 1.48496 * 109.46971 * 60.00035 * 8 6 4
11 11 H 1.48506 * 109.46830 * 300.00015 * 8 6 4
12 12 N 1.46506 * 109.47258 * 239.99453 * 2 1 3
13 13 N 1.40301 * 119.59890 * 299.73738 * 12 2 1
14 14 C 1.27710 * 118.93462 * 164.23670 * 13 12 2
15 15 C 1.50818 * 128.28734 * 174.79705 * 14 13 12
16 16 C 1.54477 * 106.74348 * 185.09605 * 15 14 13
17 17 C 1.55170 * 103.86614 * 21.66339 * 16 15 14
18 18 C 1.52167 * 124.23882 * 357.64181 * 14 13 12
19 19 H 1.09004 * 112.16429 * 272.07579 * 18 14 13
20 20 C 1.53097 * 107.83944 * 34.97739 * 18 14 13
21 21 C 1.34542 * 119.59501 * 120.00069 * 12 2 1
22 22 O 1.21298 * 119.61549 * 357.28091 * 21 12 2
23 23 H 1.09003 * 109.47433 * 173.18911 * 1 2 3
24 24 H 1.09003 * 109.47421 * 293.19357 * 1 2 3
25 25 H 1.09005 * 109.46854 * 53.19051 * 1 2 3
26 26 H 0.96999 * 119.99627 * 354.92610 * 7 6 4
27 27 H 1.08998 * 110.00183 * 65.78061 * 15 14 13
28 28 H 1.08995 * 110.00256 * 304.41867 * 15 14 13
29 29 H 1.08997 * 110.54939 * 263.06615 * 16 15 14
30 30 H 1.08994 * 110.66783 * 140.31731 * 16 15 14
31 31 H 1.08991 * 110.87003 * 204.79936 * 17 16 15
32 32 H 1.09000 * 110.86729 * 81.12698 * 17 16 15
33 33 H 1.08990 * 109.62496 * 193.54136 * 20 18 14
34 34 H 1.09002 * 109.61707 * 72.98753 * 20 18 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0322 -0.7104 1.2305
5 1 2.5759 -1.6386 1.1341
6 6 1.7976 -0.1755 2.4794
7 7 1.8083 -0.9526 3.5403
8 14 1.4647 1.6533 2.6647
9 1 1.2461 1.9739 4.0981
10 1 0.2544 2.0175 1.8853
11 1 2.6298 2.4223 2.1580
12 7 2.0183 -0.6907 -1.1961
13 7 1.6788 -2.0356 -1.4069
14 6 1.8410 -2.5390 -2.5693
15 6 1.6507 -3.9711 -3.0024
16 6 2.1054 -4.0544 -4.4764
17 6 3.0405 -2.8279 -4.6470
18 6 2.3374 -1.7594 -3.7782
19 1 1.5229 -1.2794 -4.3207
20 6 3.3597 -0.7316 -3.2860
21 6 2.7913 -0.0291 -2.0764
22 8 3.0348 1.1454 -1.8960
23 1 -0.3634 -1.0204 -0.1219
24 1 -0.3634 0.4047 0.9446
25 1 -0.3633 0.6158 -0.8228
26 1 1.9078 -1.9120 3.4376
27 1 0.6000 -4.2490 -2.9201
28 1 2.2609 -4.6312 -2.3861
29 1 1.2487 -3.9784 -5.1460
30 1 2.6513 -4.9800 -4.6588
31 1 3.0828 -2.5140 -5.6899
32 1 4.0381 -3.0441 -4.2647
33 1 3.5554 -0.0039 -4.0735
34 1 4.2857 -1.2380 -3.0136
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601936555.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:35
Heat of formation + Delta-G solvation = -4.644070 kcal
Electronic energy + Delta-G solvation = -17187.572846 eV
Core-core repulsion = 14506.773163 eV
Total energy + Delta-G solvation = -2680.799683 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.34544 -37.94621 -35.79707 -33.67820 -31.83862 -31.52666 -28.97444 -27.00150
-24.86269 -24.40042 -21.59906 -20.97559 -20.19372 -17.67125 -17.27271 -16.72075
-15.81027 -15.18088 -15.08524 -14.12158 -13.91580 -13.56120 -13.07453 -12.77482
-12.69417 -12.37923 -12.14828 -11.94051 -11.62940 -11.42867 -11.29655 -11.26383
-10.84858 -10.63529 -10.45506 -10.30574 -9.84266 -9.72162 -9.07789 -8.92774
-8.25188 -7.78899 -6.46259 -4.05270 2.08205 2.97092 3.30044 3.41588
3.49898 3.65383 4.21584 4.42673 4.50626 4.62442 4.80898 5.02367
5.11758 5.14873 5.20938 5.32293 5.48064 5.57504 5.67066 5.78014
5.85566 5.97242 6.05280 6.14747 6.34518 6.44584 6.55659 6.74766
6.83758 7.27427 7.36892 7.91116 8.39691 8.42835 8.80073 8.97186
9.58126 10.89888
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036523 B = 0.007835 C = 0.007021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.455438 B = 3572.850369 C = 3987.282906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C 0.255 3.745
3 H 0.060 0.940
4 C -0.606 4.606
5 H 0.066 0.934
6 C 0.041 3.959
7 N -0.894 5.894
8 Si 1.028 2.972
9 H -0.281 1.281
10 H -0.276 1.276
11 H -0.279 1.279
12 N -0.430 5.430
13 N -0.192 5.192
14 C 0.061 3.939
15 C -0.060 4.060
16 C -0.120 4.120
17 C -0.112 4.112
18 C -0.095 4.095
19 H 0.101 0.899
20 C -0.137 4.137
21 C 0.483 3.517
22 O -0.539 6.539
23 H 0.054 0.946
24 H 0.065 0.935
25 H 0.022 0.978
26 H 0.270 0.730
27 H 0.086 0.914
28 H 0.086 0.914
29 H 0.072 0.928
30 H 0.075 0.925
31 H 0.074 0.926
32 H 0.074 0.926
33 H 0.102 0.898
34 H 0.099 0.901
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.139 -5.558 -17.075 17.957
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C 0.155 3.845
3 H 0.078 0.922
4 C -0.643 4.643
5 H 0.084 0.916
6 C -0.166 4.166
7 N -0.526 5.526
8 Si 0.855 3.145
9 H -0.207 1.207
10 H -0.202 1.202
11 H -0.205 1.205
12 N -0.248 5.248
13 N 0.004 4.996
14 C -0.134 4.134
15 C -0.100 4.100
16 C -0.158 4.158
17 C -0.150 4.150
18 C -0.117 4.117
19 H 0.119 0.881
20 C -0.177 4.177
21 C 0.271 3.729
22 O -0.414 6.414
23 H 0.073 0.927
24 H 0.084 0.916
25 H 0.041 0.959
26 H 0.080 0.920
27 H 0.104 0.896
28 H 0.104 0.896
29 H 0.091 0.909
30 H 0.093 0.907
31 H 0.093 0.907
32 H 0.093 0.907
33 H 0.121 0.879
34 H 0.117 0.883
Dipole moment (debyes) X Y Z Total
from point charges -0.541 -3.740 -14.817 15.291
hybrid contribution 0.590 -0.974 -1.784 2.116
sum 0.049 -4.713 -16.601 17.258
Atomic orbital electron populations
1.22418 0.98100 1.00737 1.00011 1.19309 0.90963 0.93143 0.81095
0.92201 1.22054 1.41004 1.10988 0.90294 0.91599 1.25614 0.93502
1.05671 0.91801 1.70837 1.43723 1.06453 1.31627 0.84278 0.77623
0.76212 0.76373 1.20674 1.20196 1.20524 1.49385 1.46640 1.05794
1.22947 1.74297 1.11698 0.95660 1.17895 1.25312 0.99144 0.98281
0.90653 1.20738 1.02973 0.90287 0.95966 1.22439 0.99416 0.98441
0.95474 1.22517 0.98754 0.94229 0.99521 1.21796 0.98306 0.95680
0.95877 0.88134 1.21955 0.99738 0.99360 0.96681 1.21075 0.79788
0.87513 0.84569 1.90676 1.59159 1.15741 1.75823 0.92707 0.91625
0.95929 0.91962 0.89598 0.89606 0.90948 0.90662 0.90688 0.90694
0.87913 0.88309
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.67 9.10 37.15 0.34 -3.33 16
2 C 0.25 6.69 2.28 -69.08 -0.16 6.53 16
3 H 0.06 1.66 5.42 -51.93 -0.28 1.38 16
4 C -0.61 -17.80 8.78 -34.44 -0.30 -18.10 16
5 H 0.07 2.10 8.03 -52.49 -0.42 1.68 16
6 C 0.04 1.21 5.20 -17.82 -0.09 1.11 16
7 N -0.89 -27.69 13.70 55.43 0.76 -26.93 16
8 Si 1.03 25.94 26.44 -169.99 -4.49 21.44 16
9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16
10 H -0.28 -6.45 6.14 56.52 0.35 -6.11 16
11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16
12 N -0.43 -10.05 3.23 -54.88 -0.18 -10.23 16
13 N -0.19 -4.00 10.72 35.84 0.38 -3.61 16
14 C 0.06 0.95 7.11 -78.25 -0.56 0.39 16
15 C -0.06 -0.66 6.70 -27.05 -0.18 -0.84 16
16 C -0.12 -0.94 6.87 -24.81 -0.17 -1.11 16
17 C -0.11 -0.98 6.36 -24.73 -0.16 -1.14 16
18 C -0.10 -1.19 3.28 -90.14 -0.30 -1.49 16
19 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16
20 C -0.14 -2.05 5.64 -27.69 -0.16 -2.21 16
21 C 0.48 10.44 7.51 -10.95 -0.08 10.36 16
22 O -0.54 -13.34 16.34 5.54 0.09 -13.25 16
23 H 0.05 1.28 7.80 -51.93 -0.41 0.88 16
24 H 0.06 1.58 5.47 -51.93 -0.28 1.29 16
25 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16
26 H 0.27 8.36 8.73 -40.82 -0.36 8.00 16
27 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16
28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
32 H 0.07 0.65 7.74 -51.93 -0.40 0.25 16
33 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16
34 H 0.10 1.38 7.74 -51.93 -0.40 0.98 16
LS Contribution 275.68 15.07 4.15 4.15
Total: -1.00 -34.26 275.68 -5.88 -40.14
By element:
Atomic # 1 Polarization: 2.90 SS G_CDS: -4.78 Total: -1.88 kcal
Atomic # 6 Polarization: -8.02 SS G_CDS: -1.81 Total: -9.84 kcal
Atomic # 7 Polarization: -41.74 SS G_CDS: 0.97 Total: -40.77 kcal
Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal
Atomic # 14 Polarization: 25.94 SS G_CDS: -4.49 Total: 21.44 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -34.26 -5.88 -40.14 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601936555.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.497 kcal
(2) G-P(sol) polarization free energy of solvation -34.259 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds