Wall clock time and date at job start Mon Mar 30 2020 03:42:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.08999 * 109.47301 * 2 1
4 4 C 1.50699 * 109.46835 * 120.00050 * 2 1 3
5 5 H 1.08001 * 120.00327 * 114.36149 * 4 2 1
6 6 C 1.37881 * 120.00093 * 294.35964 * 4 2 1
7 7 N 1.31510 * 120.00280 * 156.91459 * 6 4 2
8 8 Si 1.86803 * 119.99774 * 336.91098 * 6 4 2
9 9 H 1.48500 * 109.47094 * 180.02562 * 8 6 4
10 10 H 1.48496 * 109.46971 * 60.00035 * 8 6 4
11 11 H 1.48506 * 109.46830 * 300.00015 * 8 6 4
12 12 N 1.46506 * 109.47258 * 239.99453 * 2 1 3
13 13 N 1.40301 * 119.59890 * 299.73738 * 12 2 1
14 14 C 1.27710 * 118.93462 * 164.23670 * 13 12 2
15 15 C 1.50818 * 128.28734 * 174.79705 * 14 13 12
16 16 C 1.54477 * 106.74348 * 185.09605 * 15 14 13
17 17 C 1.55170 * 103.86614 * 21.66339 * 16 15 14
18 18 C 1.52167 * 124.23882 * 357.64181 * 14 13 12
19 19 H 1.09004 * 112.16429 * 272.07579 * 18 14 13
20 20 C 1.53097 * 107.83944 * 34.97739 * 18 14 13
21 21 C 1.34542 * 119.59501 * 120.00069 * 12 2 1
22 22 O 1.21298 * 119.61549 * 357.28091 * 21 12 2
23 23 H 1.09003 * 109.47433 * 173.18911 * 1 2 3
24 24 H 1.09003 * 109.47421 * 293.19357 * 1 2 3
25 25 H 1.09005 * 109.46854 * 53.19051 * 1 2 3
26 26 H 0.96999 * 119.99627 * 354.92610 * 7 6 4
27 27 H 1.08998 * 110.00183 * 65.78061 * 15 14 13
28 28 H 1.08995 * 110.00256 * 304.41867 * 15 14 13
29 29 H 1.08997 * 110.54939 * 263.06615 * 16 15 14
30 30 H 1.08994 * 110.66783 * 140.31731 * 16 15 14
31 31 H 1.08991 * 110.87003 * 204.79936 * 17 16 15
32 32 H 1.09000 * 110.86729 * 81.12698 * 17 16 15
33 33 H 1.08990 * 109.62496 * 193.54136 * 20 18 14
34 34 H 1.09002 * 109.61707 * 72.98753 * 20 18 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0322 -0.7104 1.2305
5 1 2.5759 -1.6386 1.1341
6 6 1.7976 -0.1755 2.4794
7 7 1.8083 -0.9526 3.5403
8 14 1.4647 1.6533 2.6647
9 1 1.2461 1.9739 4.0981
10 1 0.2544 2.0175 1.8853
11 1 2.6298 2.4223 2.1580
12 7 2.0183 -0.6907 -1.1961
13 7 1.6788 -2.0356 -1.4069
14 6 1.8410 -2.5390 -2.5693
15 6 1.6507 -3.9711 -3.0024
16 6 2.1054 -4.0544 -4.4764
17 6 3.0405 -2.8279 -4.6470
18 6 2.3374 -1.7594 -3.7782
19 1 1.5229 -1.2794 -4.3207
20 6 3.3597 -0.7316 -3.2860
21 6 2.7913 -0.0291 -2.0764
22 8 3.0348 1.1454 -1.8960
23 1 -0.3634 -1.0204 -0.1219
24 1 -0.3634 0.4047 0.9446
25 1 -0.3633 0.6158 -0.8228
26 1 1.9078 -1.9120 3.4376
27 1 0.6000 -4.2490 -2.9201
28 1 2.2609 -4.6312 -2.3861
29 1 1.2487 -3.9784 -5.1460
30 1 2.6513 -4.9800 -4.6588
31 1 3.0828 -2.5140 -5.6899
32 1 4.0381 -3.0441 -4.2647
33 1 3.5554 -0.0039 -4.0735
34 1 4.2857 -1.2380 -3.0136
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601936555.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:35
Heat of formation + Delta-G solvation = -29.007977 kcal
Electronic energy + Delta-G solvation = -17188.629344 eV
Core-core repulsion = 14506.773163 eV
Total energy + Delta-G solvation = -2681.856181 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-41.77905 -39.26762 -37.43219 -35.49780 -33.48827 -32.99284 -30.59352 -28.01117
-26.93582 -25.67774 -23.25202 -22.19684 -21.44080 -19.81776 -18.52623 -18.23607
-17.48760 -16.63755 -16.25730 -15.69619 -15.48541 -14.89075 -14.71509 -14.46086
-14.10476 -13.84969 -13.59462 -13.44437 -13.19945 -13.03504 -12.53742 -12.43725
-12.14222 -11.99956 -11.97863 -11.76845 -11.46056 -11.34015 -11.18505 -10.51880
-10.39373 -9.52906 -8.79724 -6.42289 0.72765 1.38316 1.42905 1.45665
1.67894 1.77409 2.38707 2.87908 3.03455 3.37766 3.63322 3.86101
4.02068 4.17827 4.28456 4.35485 4.40118 4.52072 4.57418 4.59500
4.67193 4.78291 4.91345 5.05898 5.08468 5.17211 5.25674 5.29834
5.45310 5.49001 5.55605 5.82017 5.97743 6.48903 6.79724 7.29008
7.32533 8.51612
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036523 B = 0.007835 C = 0.007021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 766.455438 B = 3572.850369 C = 3987.282906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.255 3.745
3 H 0.043 0.957
4 C -0.607 4.607
5 H 0.024 0.976
6 C -0.004 4.004
7 N -0.919 5.919
8 Si 1.068 2.932
9 H -0.273 1.273
10 H -0.245 1.245
11 H -0.278 1.278
12 N -0.448 5.448
13 N -0.261 5.261
14 C 0.083 3.917
15 C -0.066 4.066
16 C -0.107 4.107
17 C -0.103 4.103
18 C -0.094 4.094
19 H 0.117 0.883
20 C -0.126 4.126
21 C 0.465 3.535
22 O -0.586 6.586
23 H 0.050 0.950
24 H 0.060 0.940
25 H 0.044 0.956
26 H 0.256 0.744
27 H 0.096 0.904
28 H 0.087 0.913
29 H 0.092 0.908
30 H 0.099 0.901
31 H 0.106 0.894
32 H 0.077 0.923
33 H 0.128 0.872
34 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.521 -6.131 -20.409 21.316
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C 0.153 3.847
3 H 0.060 0.940
4 C -0.645 4.645
5 H 0.043 0.957
6 C -0.205 4.205
7 N -0.553 5.553
8 Si 0.889 3.111
9 H -0.198 1.198
10 H -0.170 1.170
11 H -0.204 1.204
12 N -0.264 5.264
13 N -0.065 5.065
14 C -0.111 4.111
15 C -0.105 4.105
16 C -0.145 4.145
17 C -0.140 4.140
18 C -0.115 4.115
19 H 0.134 0.866
20 C -0.166 4.166
21 C 0.255 3.745
22 O -0.466 6.466
23 H 0.069 0.931
24 H 0.079 0.921
25 H 0.063 0.937
26 H 0.065 0.935
27 H 0.115 0.885
28 H 0.105 0.895
29 H 0.110 0.890
30 H 0.117 0.883
31 H 0.124 0.876
32 H 0.095 0.905
33 H 0.147 0.853
34 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -0.932 -4.365 -18.184 18.724
hybrid contribution 0.750 -0.988 -0.871 1.515
sum -0.182 -5.353 -19.055 19.793
Atomic orbital electron populations
1.22221 0.96309 1.00920 1.00588 1.18964 0.92240 0.92119 0.81427
0.93960 1.22101 1.40471 1.09513 0.92378 0.95744 1.26932 0.92858
1.09164 0.91522 1.70949 1.46154 1.05793 1.32405 0.83763 0.78863
0.71295 0.77220 1.19784 1.16951 1.20356 1.49214 1.47357 1.07361
1.22429 1.74384 1.16428 0.94365 1.21289 1.26395 0.93855 1.00589
0.90295 1.21064 1.03944 0.87065 0.98448 1.22469 1.00146 0.99119
0.92762 1.22560 0.98464 0.92720 1.00285 1.22020 0.98527 0.95838
0.95155 0.86551 1.22032 1.00216 1.00113 0.94205 1.22271 0.78945
0.87397 0.85883 1.90629 1.60827 1.17820 1.77291 0.93107 0.92095
0.93699 0.93462 0.88528 0.89475 0.88989 0.88254 0.87556 0.90465
0.85349 0.87330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -6.79 9.10 71.98 0.66 -6.14 16
2 C 0.25 13.71 2.28 44.24 0.10 13.81 16
3 H 0.04 2.42 5.42 -2.39 -0.01 2.41 16
4 C -0.61 -37.29 8.78 25.60 0.22 -37.07 16
5 H 0.02 1.66 8.03 -2.91 -0.02 1.63 16
6 C 0.00 -0.24 5.20 84.66 0.44 0.20 16
7 N -0.92 -58.97 13.70 21.45 0.29 -58.68 16
8 Si 1.07 53.06 26.44 68.60 1.81 54.88 16
9 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16
10 H -0.25 -10.92 6.14 99.48 0.61 -10.31 16
11 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16
12 N -0.45 -21.41 3.23 -446.07 -1.44 -22.85 16
13 N -0.26 -11.02 10.72 -40.12 -0.43 -11.45 16
14 C 0.08 2.43 7.11 47.08 0.33 2.76 16
15 C -0.07 -1.24 6.70 30.39 0.20 -1.04 16
16 C -0.11 -1.11 6.87 31.84 0.22 -0.89 16
17 C -0.10 -1.24 6.36 31.89 0.20 -1.04 16
18 C -0.09 -2.03 3.28 -10.48 -0.03 -2.07 16
19 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16
20 C -0.13 -3.51 5.64 29.97 0.17 -3.34 16
21 C 0.47 20.24 7.51 87.78 0.66 20.90 16
22 O -0.59 -29.70 16.34 -3.09 -0.05 -29.75 16
23 H 0.05 2.41 7.80 -2.39 -0.02 2.40 16
24 H 0.06 2.91 5.47 -2.39 -0.01 2.89 16
25 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16
26 H 0.26 16.69 8.73 -92.71 -0.81 15.88 16
27 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16
28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16
29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16
30 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16
31 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16
32 H 0.08 0.96 7.74 -2.39 -0.02 0.94 16
33 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16
34 H 0.11 2.82 7.74 -2.39 -0.02 2.80 16
Total: -1.00 -80.37 275.68 4.32 -76.05
By element:
Atomic # 1 Polarization: 4.75 SS G_CDS: 0.96 Total: 5.70 kcal
Atomic # 6 Polarization: -17.08 SS G_CDS: 3.17 Total: -13.90 kcal
Atomic # 7 Polarization: -91.40 SS G_CDS: -1.58 Total: -92.98 kcal
Atomic # 8 Polarization: -29.70 SS G_CDS: -0.05 Total: -29.75 kcal
Atomic # 14 Polarization: 53.06 SS G_CDS: 1.81 Total: 54.88 kcal
Total: -80.37 4.32 -76.05 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601936555.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.044 kcal
(2) G-P(sol) polarization free energy of solvation -80.370 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.008 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds