Wall clock time and date at job start Mon Mar 30 2020 03:04:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.27564 * 126.41813 * 2 1
4 4 N 1.39151 * 113.16756 * 179.97438 * 3 2 1
5 5 C 1.46502 * 124.44108 * 180.02562 * 4 3 2
6 6 H 1.08993 * 109.46748 * 179.97438 * 5 4 3
7 7 C 1.52997 * 109.46808 * 299.97875 * 5 4 3
8 8 C 1.50706 * 109.46901 * 59.97489 * 5 4 3
9 9 H 1.08000 * 120.00000 * 359.97438 * 8 5 4
10 10 C 1.37878 * 119.99555 * 180.02562 * 8 5 4
11 11 N 1.31516 * 119.99376 * 180.02562 * 10 8 5
12 12 Si 1.86799 * 120.00313 * 359.97438 * 10 8 5
13 13 H 1.48501 * 109.47033 * 90.00451 * 12 10 8
14 14 H 1.48499 * 109.47329 * 210.00468 * 12 10 8
15 15 H 1.48503 * 109.47057 * 330.00451 * 12 10 8
16 16 C 1.34950 * 111.11909 * 359.97438 * 4 3 2
17 17 O 1.21304 * 127.49886 * 179.97438 * 16 4 3
18 18 C 1.51442 * 126.41533 * 179.68590 * 2 1 3
19 19 H 1.09001 * 110.60675 * 298.55098 * 18 2 1
20 20 C 1.52998 * 110.60720 * 61.52505 * 18 2 1
21 21 C 1.53003 * 117.49727 * 248.62122 * 20 18 2
22 22 C 1.52995 * 60.00024 * 252.50892 * 21 20 18
23 23 H 1.09002 * 109.47152 * 0.02562 * 1 2 3
24 24 H 1.09001 * 109.46980 * 240.02513 * 1 2 3
25 25 H 1.09004 * 109.47113 * 120.02494 * 1 2 3
26 26 H 1.09003 * 109.47339 * 299.99433 * 7 5 4
27 27 H 1.08999 * 109.47925 * 59.99746 * 7 5 4
28 28 H 1.09006 * 109.46649 * 180.02562 * 7 5 4
29 29 H 0.97007 * 119.99797 * 179.97438 * 11 10 8
30 30 H 1.09001 * 115.55313 * 34.32185 * 20 18 2
31 31 H 1.09002 * 117.49859 * 359.97438 * 21 20 18
32 32 H 1.08999 * 117.49972 * 145.01991 * 21 20 18
33 33 H 1.08999 * 117.50197 * 252.51327 * 22 21 20
34 34 H 1.09005 * 117.50018 * 107.48997 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2643 1.0265 0.0000
4 7 3.6188 0.7076 0.0006
5 6 4.7022 1.6937 0.0012
6 1 5.6626 1.1782 0.0021
7 6 4.5947 2.5702 -1.2482
8 6 4.5946 2.5574 1.2316
9 1 3.7985 2.3889 1.9416
10 6 5.5118 3.5634 1.4500
11 7 5.4181 4.3167 2.5239
12 14 6.8883 3.8553 0.2214
13 1 6.4372 4.8288 -0.8053
14 1 8.0765 4.3966 0.9286
15 1 7.2454 2.5724 -0.4360
16 6 3.8036 -0.6292 0.0016
17 8 4.8580 -1.2290 0.0018
18 6 2.4060 -1.2187 0.0067
19 1 2.2414 -1.8120 0.9061
20 6 2.1762 -2.0642 -1.2475
21 6 1.5179 -3.4333 -1.0657
22 6 3.0075 -3.3394 -1.4019
23 1 -0.3633 1.0277 -0.0005
24 1 -0.3633 -0.5135 0.8902
25 1 -0.3633 -0.5142 -0.8898
26 1 4.6726 1.9455 -2.1381
27 1 3.6343 3.0856 -1.2490
28 1 5.4011 3.3036 -1.2479
29 1 6.0636 5.0243 2.6778
30 1 1.9369 -1.5067 -2.1531
31 1 1.2488 -3.7318 -0.0524
32 1 0.8452 -3.7767 -1.8516
33 1 3.3148 -3.6210 -2.4091
34 1 3.7181 -3.5760 -0.6100
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601937213.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:29
Heat of formation + Delta-G solvation = 25.225556 kcal
Electronic energy + Delta-G solvation = -16997.451440 eV
Core-core repulsion = 14317.947002 eV
Total energy + Delta-G solvation = -2679.504439 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.35921 -38.49454 -38.17757 -36.45138 -34.14049 -32.10032 -30.10931 -28.72010
-27.28924 -23.95037 -23.17450 -22.62122 -21.44798 -20.23617 -18.83488 -18.00747
-17.26767 -16.91025 -16.48809 -15.74739 -15.31482 -14.94379 -14.85130 -14.37315
-14.32133 -14.21304 -13.74591 -13.48550 -13.15039 -12.86548 -12.79738 -12.33000
-12.28088 -12.23865 -12.04426 -11.60874 -11.53466 -11.47487 -11.02375 -10.88044
-10.37210 -9.51261 -8.42437 -6.49359 0.69892 1.21959 1.29398 1.38527
1.57878 1.71791 2.20327 2.60745 2.90156 3.08753 3.26442 3.63835
3.89939 4.02276 4.18289 4.24327 4.31177 4.40369 4.51650 4.55160
4.67625 4.83681 4.85039 4.95775 5.00781 5.07098 5.21111 5.23300
5.32041 5.35808 5.41426 5.64474 6.12814 6.50730 6.79640 7.00312
7.16218 8.74433
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.035409 B = 0.007526 C = 0.006828
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 790.577727 B = 3719.540840 C = 4099.857235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C 0.097 3.903
3 N -0.261 5.261
4 N -0.454 5.454
5 C 0.258 3.742
6 H 0.042 0.958
7 C -0.148 4.148
8 C -0.530 4.530
9 H 0.035 0.965
10 C 0.022 3.978
11 N -0.936 5.936
12 Si 0.945 3.055
13 H -0.251 1.251
14 H -0.286 1.286
15 H -0.257 1.257
16 C 0.477 3.523
17 O -0.550 6.550
18 C -0.098 4.098
19 H 0.143 0.857
20 C -0.145 4.145
21 C -0.127 4.127
22 C -0.188 4.188
23 H 0.078 0.922
24 H 0.110 0.890
25 H 0.117 0.883
26 H 0.055 0.945
27 H 0.064 0.936
28 H 0.052 0.948
29 H 0.272 0.728
30 H 0.114 0.886
31 H 0.110 0.890
32 H 0.126 0.874
33 H 0.103 0.897
34 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.921 -13.220 -9.876 20.358
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.096 4.096
3 N -0.067 5.067
4 N -0.271 5.271
5 C 0.156 3.844
6 H 0.060 0.940
7 C -0.205 4.205
8 C -0.568 4.568
9 H 0.053 0.947
10 C -0.177 4.177
11 N -0.575 5.575
12 Si 0.770 3.230
13 H -0.176 1.176
14 H -0.213 1.213
15 H -0.181 1.181
16 C 0.265 3.735
17 O -0.428 6.428
18 C -0.122 4.122
19 H 0.161 0.839
20 C -0.164 4.164
21 C -0.164 4.164
22 C -0.225 4.225
23 H 0.097 0.903
24 H 0.128 0.872
25 H 0.136 0.864
26 H 0.074 0.926
27 H 0.083 0.917
28 H 0.071 0.929
29 H 0.081 0.919
30 H 0.132 0.868
31 H 0.129 0.871
32 H 0.145 0.855
33 H 0.122 0.878
34 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -11.030 -12.267 -9.767 19.171
hybrid contribution 1.365 -0.010 0.233 1.384
sum -9.666 -12.277 -9.534 18.304
Atomic orbital electron populations
1.20551 0.81008 1.05000 1.06085 1.26196 0.99157 0.88755 0.95511
1.74708 0.88976 1.28467 1.14561 1.50003 1.03569 1.06240 1.67272
1.19046 0.83775 0.86473 0.95057 0.94044 1.22251 1.02150 0.99465
0.96679 1.21175 1.13509 1.16022 1.06072 0.94693 1.25730 0.99795
0.94770 0.97401 1.70004 1.38015 1.20973 1.28543 0.85919 0.78281
0.79801 0.78956 1.17597 1.21312 1.18146 1.22153 0.92544 0.83190
0.75592 1.90640 1.32861 1.66985 1.52265 1.21351 0.90142 0.97743
1.02926 0.83922 1.21664 1.09035 0.89989 0.95721 1.23189 0.94034
0.94438 1.04738 1.23001 0.95777 1.00417 1.03324 0.90294 0.87213
0.86435 0.92616 0.91704 0.92936 0.91895 0.86791 0.87120 0.85539
0.87820 0.90281
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.08 10.49 71.24 0.75 -0.34 16
2 C 0.10 2.77 6.93 46.83 0.32 3.10 16
3 N -0.26 -10.63 11.77 -40.84 -0.48 -11.11 16
4 N -0.45 -21.35 3.23 -444.72 -1.44 -22.79 16
5 C 0.26 13.55 2.57 44.25 0.11 13.67 16
6 H 0.04 2.32 6.74 -2.39 -0.02 2.30 16
7 C -0.15 -6.73 8.89 71.98 0.64 -6.09 16
8 C -0.53 -32.20 9.30 25.60 0.24 -31.97 16
9 H 0.03 2.38 8.06 -2.91 -0.02 2.36 16
10 C 0.02 1.33 5.45 84.65 0.46 1.79 16
11 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16
12 Si 0.95 45.69 24.37 68.60 1.67 47.37 16
13 H -0.25 -11.15 6.87 99.48 0.68 -10.47 16
14 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
15 H -0.26 -12.01 6.53 99.48 0.65 -11.36 16
16 C 0.48 20.56 7.65 87.94 0.67 21.23 16
17 O -0.55 -26.87 17.14 -3.10 -0.05 -26.93 16
18 C -0.10 -2.87 3.17 -11.74 -0.04 -2.90 16
19 H 0.14 3.63 7.99 -2.39 -0.02 3.61 16
20 C -0.14 -3.18 5.16 -10.79 -0.06 -3.24 16
21 C -0.13 -1.78 10.19 30.59 0.31 -1.47 16
22 C -0.19 -4.09 9.84 30.59 0.30 -3.79 16
23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
24 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
25 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16
26 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16
27 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16
28 H 0.05 2.36 3.27 -2.38 -0.01 2.35 16
29 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16
30 H 0.11 2.41 8.13 -2.39 -0.02 2.39 16
31 H 0.11 1.29 8.10 -2.39 -0.02 1.27 16
32 H 0.13 1.11 8.14 -2.39 -0.02 1.10 16
33 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16
34 H 0.08 2.11 7.98 -2.38 -0.02 2.09 16
Total: -1.00 -78.49 286.17 4.73 -73.76
By element:
Atomic # 1 Polarization: 7.80 SS G_CDS: 1.01 Total: 8.81 kcal
Atomic # 6 Polarization: -13.72 SS G_CDS: 3.72 Total: -10.01 kcal
Atomic # 7 Polarization: -91.39 SS G_CDS: -1.62 Total: -93.00 kcal
Atomic # 8 Polarization: -26.87 SS G_CDS: -0.05 Total: -26.93 kcal
Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.37 kcal
Total: -78.49 4.73 -73.76 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601937213.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.986 kcal
(2) G-P(sol) polarization free energy of solvation -78.488 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.498 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.226 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds