Wall clock time and date at job start Mon Mar 30 2020 03:02:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50692 * 1
3 3 N 1.30501 * 125.65475 * 2 1
4 4 C 1.34127 * 109.25821 * 180.02562 * 3 2 1
5 5 C 1.34665 * 108.02169 * 0.02562 * 4 3 2
6 6 C 1.50697 * 126.59144 * 179.97438 * 5 4 3
7 7 H 1.09006 * 109.89852 * 325.54665 * 6 5 4
8 8 C 1.54379 * 109.82908 * 86.47549 * 6 5 4
9 9 C 1.55309 * 102.25136 * 140.86972 * 8 6 5
10 10 C 1.54942 * 100.94267 * 325.87056 * 9 8 6
11 11 H 1.09004 * 110.39123 * 277.48125 * 10 9 8
12 12 C 1.50699 * 110.31197 * 155.35919 * 10 9 8
13 13 H 1.08001 * 120.00074 * 274.88641 * 12 10 9
14 14 C 1.37881 * 119.99978 * 94.87679 * 12 10 9
15 15 N 1.31512 * 120.00083 * 2.38581 * 14 12 10
16 16 Si 1.86803 * 119.99815 * 182.37674 * 14 12 10
17 17 H 1.48496 * 109.47126 * 270.00428 * 16 14 12
18 18 H 1.48494 * 109.47067 * 30.00696 * 16 14 12
19 19 H 1.48499 * 109.47070 * 150.00691 * 16 14 12
20 20 O 1.43237 * 109.83449 * 204.60957 * 6 5 4
21 21 N 1.35045 * 125.64974 * 180.31768 * 2 1 3
22 22 C 1.46502 * 126.39593 * 359.97438 * 21 2 1
23 23 H 1.09007 * 109.46988 * 89.96955 * 1 2 3
24 24 H 1.08993 * 109.47697 * 209.96896 * 1 2 3
25 25 H 1.09002 * 109.47357 * 329.97428 * 1 2 3
26 26 H 1.08004 * 125.98766 * 180.02562 * 4 3 2
27 27 H 1.08999 * 110.85196 * 259.05773 * 8 6 5
28 28 H 1.09002 * 110.85032 * 22.68359 * 8 6 5
29 29 H 1.09002 * 111.12721 * 207.94740 * 9 8 6
30 30 H 1.09003 * 111.12497 * 83.78785 * 9 8 6
31 31 H 0.97002 * 120.00217 * 353.46027 * 15 14 12
32 32 H 1.09003 * 109.47399 * 263.54634 * 22 21 2
33 33 H 1.08997 * 109.47353 * 23.55192 * 22 21 2
34 34 H 1.09004 * 109.46843 * 143.54988 * 22 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2676 1.0604 0.0000
4 6 3.5543 0.6818 -0.0006
5 6 3.5925 -0.6643 -0.0015
6 6 4.8275 -1.5280 -0.0029
7 1 5.6155 -1.0476 -0.5830
8 6 5.3088 -1.7559 1.4461
9 6 5.7569 -3.2426 1.4145
10 6 4.7316 -3.8377 0.4169
11 1 3.7963 -4.0694 0.9265
12 6 5.2925 -5.0761 -0.2333
13 1 5.9218 -4.9896 -1.1068
14 6 5.0025 -6.3196 0.2870
15 7 4.1987 -6.4281 1.3222
16 14 5.7512 -7.8502 -0.4786
17 1 4.8523 -8.3609 -1.5445
18 1 7.0734 -7.5142 -1.0651
19 1 5.9232 -8.8924 0.5652
20 8 4.5233 -2.8100 -0.5647
21 7 2.2940 -1.0974 -0.0061
22 6 1.8424 -2.4910 -0.0133
23 1 -0.3633 0.0005 -1.0277
24 1 -0.3634 -0.8902 0.5133
25 1 -0.3634 0.8898 0.5142
26 1 4.4099 1.3410 -0.0003
27 1 6.1485 -1.1027 1.6833
28 1 4.4920 -1.6120 2.1534
29 1 5.6610 -3.7029 2.3979
30 1 6.7746 -3.3382 1.0357
31 1 3.8854 -5.6316 1.7786
32 1 1.8406 -2.8777 1.0058
33 1 0.8341 -2.5441 -0.4238
34 1 2.5166 -3.0882 -0.6273
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689738317.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:34
Heat of formation + Delta-G solvation = -14.911080 kcal
Electronic energy + Delta-G solvation = -17197.529164 eV
Core-core repulsion = 14516.284270 eV
Total energy + Delta-G solvation = -2681.244894 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-43.19985 -40.16051 -35.35556 -34.93154 -33.36961 -32.60648 -30.49453 -28.08103
-27.57881 -25.84829 -23.35709 -22.55654 -21.71093 -20.53713 -19.15033 -17.75327
-17.59567 -16.94242 -16.26948 -15.77223 -15.54571 -15.07518 -14.84389 -14.26643
-14.17148 -13.93066 -13.73313 -13.56489 -13.17640 -13.05481 -12.93180 -12.59417
-12.50920 -12.25357 -11.94427 -11.78452 -11.11125 -11.05821 -10.65949 -10.56031
-10.23056 -9.17847 -8.70633 -6.46133 0.98461 1.53373 1.59827 1.79635
1.84719 2.05387 2.50126 2.89959 3.35220 3.54486 3.60494 3.72023
3.91166 4.00470 4.09964 4.22547 4.35569 4.45238 4.50071 4.55227
4.69052 4.72990 4.79581 4.88683 4.96087 5.00105 5.04900 5.31120
5.44552 5.72679 5.86732 6.01070 6.24428 6.38445 6.56833 7.05232
7.32019 8.65376
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038312 B = 0.006948 C = 0.006324
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.672399 B = 4028.766231 C = 4426.338819
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 C 0.187 3.813
3 N -0.521 5.521
4 C -0.036 4.036
5 C -0.042 4.042
6 C 0.147 3.853
7 H 0.104 0.896
8 C -0.130 4.130
9 C -0.142 4.142
10 C 0.189 3.811
11 H 0.016 0.984
12 C -0.609 4.609
13 H 0.045 0.955
14 C -0.017 4.017
15 N -0.928 5.928
16 Si 1.117 2.883
17 H -0.274 1.274
18 H -0.272 1.272
19 H -0.279 1.279
20 O -0.395 6.395
21 N -0.445 5.445
22 C 0.067 3.933
23 H 0.093 0.907
24 H 0.088 0.912
25 H 0.099 0.901
26 H 0.189 0.811
27 H 0.106 0.894
28 H 0.060 0.940
29 H 0.058 0.942
30 H 0.068 0.932
31 H 0.260 0.740
32 H 0.065 0.935
33 H 0.112 0.888
34 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.629 8.982 -0.609 9.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.074 4.074
3 N -0.241 5.241
4 C -0.183 4.183
5 C -0.158 4.158
6 C 0.087 3.913
7 H 0.122 0.878
8 C -0.168 4.168
9 C -0.180 4.180
10 C 0.133 3.867
11 H 0.033 0.967
12 C -0.646 4.646
13 H 0.064 0.936
14 C -0.217 4.217
15 N -0.565 5.565
16 Si 0.938 3.062
17 H -0.200 1.200
18 H -0.197 1.197
19 H -0.205 1.205
20 O -0.315 6.315
21 N -0.127 5.127
22 C -0.075 4.075
23 H 0.111 0.889
24 H 0.106 0.894
25 H 0.117 0.883
26 H 0.206 0.794
27 H 0.125 0.875
28 H 0.079 0.921
29 H 0.077 0.923
30 H 0.087 0.913
31 H 0.070 0.930
32 H 0.084 0.916
33 H 0.130 0.870
34 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -4.053 7.951 -0.746 8.956
hybrid contribution 0.423 0.800 0.273 0.945
sum -3.630 8.751 -0.473 9.486
Atomic orbital electron populations
1.20328 0.82123 1.05071 1.04651 1.24092 0.97297 0.80961 1.05094
1.70195 1.02496 1.29154 1.22233 1.22283 0.95373 0.91680 1.08996
1.21857 0.86301 0.95774 1.11852 1.21150 0.90854 0.83969 0.95286
0.87822 1.23057 1.01620 0.97064 0.95012 1.23279 1.00655 0.94333
0.99730 1.20707 0.93351 0.86199 0.86484 0.96683 1.22233 1.33573
0.92926 1.15903 0.93640 1.27232 0.94098 1.04406 0.95921 1.70905
1.31302 1.32800 1.21458 0.82925 0.76058 0.71783 0.75385 1.19993
1.19671 1.20485 1.88448 1.88520 1.14758 1.39737 1.45200 1.05926
1.08254 1.53353 1.22313 1.02893 0.78821 1.03516 0.88867 0.89351
0.88276 0.79437 0.87542 0.92075 0.92304 0.91339 0.92984 0.91646
0.86996 0.89682
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.30 9.93 71.23 0.71 -0.60 16
2 C 0.19 5.87 7.90 138.12 1.09 6.96 16
3 N -0.52 -18.02 11.25 -188.14 -2.12 -20.13 16
4 C -0.04 -1.19 11.79 83.52 0.98 -0.20 16
5 C -0.04 -1.50 5.92 40.95 0.24 -1.26 16
6 C 0.15 5.41 3.99 30.32 0.12 5.53 16
7 H 0.10 3.45 8.14 -2.38 -0.02 3.43 16
8 C -0.13 -4.43 6.53 31.86 0.21 -4.22 16
9 C -0.14 -5.95 6.56 32.05 0.21 -5.74 16
10 C 0.19 9.23 2.73 30.51 0.08 9.31 16
11 H 0.02 0.81 5.40 -2.38 -0.01 0.80 16
12 C -0.61 -33.54 8.74 25.60 0.22 -33.32 16
13 H 0.05 2.57 7.81 -2.91 -0.02 2.54 16
14 C -0.02 -0.95 5.46 84.66 0.46 -0.49 16
15 N -0.93 -53.36 13.61 21.45 0.29 -53.07 16
16 Si 1.12 48.29 29.90 68.60 2.05 50.34 16
17 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16
18 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16
19 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16
20 O -0.39 -18.10 8.07 -148.98 -1.20 -19.30 16
21 N -0.45 -15.33 3.15 -523.06 -1.65 -16.98 16
22 C 0.07 2.20 9.60 127.77 1.23 3.42 16
23 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16
24 H 0.09 1.51 7.57 -2.39 -0.02 1.50 16
25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
26 H 0.19 5.09 8.06 -2.91 -0.02 5.07 16
27 H 0.11 2.92 8.14 -2.39 -0.02 2.90 16
28 H 0.06 2.13 7.84 -2.39 -0.02 2.11 16
29 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16
30 H 0.07 2.87 8.05 -2.39 -0.02 2.85 16
31 H 0.26 14.93 6.58 -92.71 -0.61 14.32 16
32 H 0.06 2.19 7.90 -2.39 -0.02 2.18 16
33 H 0.11 2.81 7.36 -2.39 -0.02 2.79 16
34 H 0.08 3.43 5.30 -2.38 -0.01 3.42 16
Total: -1.00 -66.19 279.04 4.19 -62.01
By element:
Atomic # 1 Polarization: 16.48 SS G_CDS: 1.25 Total: 17.73 kcal
Atomic # 6 Polarization: -26.15 SS G_CDS: 5.56 Total: -20.59 kcal
Atomic # 7 Polarization: -86.71 SS G_CDS: -3.47 Total: -90.18 kcal
Atomic # 8 Polarization: -18.10 SS G_CDS: -1.20 Total: -19.30 kcal
Atomic # 14 Polarization: 48.29 SS G_CDS: 2.05 Total: 50.34 kcal
Total: -66.19 4.19 -62.01 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689738317.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.094 kcal
(2) G-P(sol) polarization free energy of solvation -66.192 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.911 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds