Wall clock time and date at job start Mon Mar 30 2020 03:02:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30504 * 125.64977 * 2 1
4 4 C 1.34122 * 109.25710 * 180.02562 * 3 2 1
5 5 C 1.34672 * 108.02039 * 0.02562 * 4 3 2
6 6 C 1.50706 * 126.59111 * 179.97438 * 5 4 3
7 7 H 1.09000 * 109.89301 * 205.54338 * 6 5 4
8 8 C 1.54378 * 109.82734 * 84.61645 * 6 5 4
9 9 C 1.55309 * 102.25014 * 219.12999 * 8 6 5
10 10 C 1.54944 * 100.94264 * 34.13276 * 9 8 6
11 11 H 1.08999 * 110.39862 * 82.51551 * 10 9 8
12 12 C 1.50699 * 110.31055 * 204.64521 * 10 9 8
13 13 H 1.08004 * 119.99856 * 357.16119 * 12 10 9
14 14 C 1.37875 * 120.00361 * 177.16802 * 12 10 9
15 15 N 1.31515 * 119.99678 * 359.97438 * 14 12 10
16 16 Si 1.86797 * 120.00222 * 179.97438 * 14 12 10
17 17 H 1.48492 * 109.47341 * 89.99725 * 16 14 12
18 18 H 1.48509 * 109.46988 * 209.99551 * 16 14 12
19 19 H 1.48498 * 109.47178 * 329.99352 * 16 14 12
20 20 O 1.43236 * 109.82978 * 326.48119 * 6 5 4
21 21 N 1.35041 * 125.65047 * 180.31616 * 2 1 3
22 22 C 1.46499 * 126.39872 * 359.97438 * 21 2 1
23 23 H 1.09000 * 109.46844 * 89.96747 * 1 2 3
24 24 H 1.08990 * 109.46855 * 209.97499 * 1 2 3
25 25 H 1.09007 * 109.47113 * 329.97357 * 1 2 3
26 26 H 1.08003 * 125.99222 * 179.97438 * 4 3 2
27 27 H 1.08997 * 110.85123 * 100.93681 * 8 6 5
28 28 H 1.09005 * 111.02275 * 337.39000 * 8 6 5
29 29 H 1.09000 * 111.12311 * 276.21255 * 9 8 6
30 30 H 1.09000 * 111.12934 * 152.05131 * 9 8 6
31 31 H 0.97002 * 119.99908 * 180.02562 * 15 14 12
32 32 H 1.08999 * 109.47198 * 270.12583 * 22 21 2
33 33 H 1.09003 * 109.46810 * 30.12363 * 22 21 2
34 34 H 1.08997 * 109.46721 * 150.12094 * 22 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2677 1.0605 0.0000
4 6 3.5544 0.6819 -0.0006
5 6 3.5926 -0.6642 -0.0015
6 6 4.8277 -1.5279 -0.0029
7 1 4.6014 -2.4980 -0.4454
8 6 5.3359 -1.7172 1.4424
9 6 6.8766 -1.6412 1.2626
10 6 6.9879 -0.6108 0.1109
11 1 6.9244 0.4046 0.5021
12 6 8.2812 -0.8017 -0.6387
13 1 8.9908 -1.5467 -0.3102
14 6 8.5586 -0.0253 -1.7438
15 7 7.6943 0.8816 -2.1440
16 14 10.1621 -0.2615 -2.6725
17 1 9.9706 -1.2746 -3.7411
18 1 10.5759 1.0282 -3.2816
19 1 11.2144 -0.7256 -1.7332
20 8 5.8691 -0.8852 -0.7473
21 7 2.2941 -1.0973 -0.0061
22 6 1.8426 -2.4910 -0.0132
23 1 -0.3633 0.0006 -1.0277
24 1 -0.3633 -0.8901 0.5134
25 1 -0.3634 0.8898 0.5143
26 1 4.4099 1.3411 -0.0011
27 1 5.0385 -2.6900 1.8339
28 1 4.9810 -0.9154 2.0900
29 1 7.2857 -2.6072 0.9664
30 1 7.3601 -1.2728 2.1674
31 1 7.8893 1.4275 -2.9217
32 1 1.7288 -2.8413 1.0126
33 1 0.8848 -2.5599 -0.5290
34 1 2.5781 -3.1085 -0.5287
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689738318.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:02:36
Heat of formation + Delta-G solvation = -11.100331 kcal
Electronic energy + Delta-G solvation = -16964.018982 eV
Core-core repulsion = 14282.939334 eV
Total energy + Delta-G solvation = -2681.079648 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-43.09609 -39.82474 -35.02412 -34.76844 -33.03060 -32.62298 -30.55934 -28.19475
-27.45212 -25.98995 -23.32183 -22.16178 -21.31333 -20.49112 -18.67227 -17.89843
-16.92609 -16.83966 -16.60730 -15.99837 -15.46036 -14.85144 -14.34389 -14.12090
-14.03459 -13.87341 -13.64085 -13.45862 -13.25319 -13.10349 -12.81707 -12.45116
-12.35157 -12.27577 -12.10579 -11.61369 -11.07819 -10.93877 -10.71883 -10.45261
-10.01203 -9.10604 -8.13611 -6.35979 1.04797 1.41311 1.42739 1.53636
1.87053 2.13552 2.41360 3.07337 3.58336 3.64103 3.74417 3.85184
3.94838 4.09476 4.24738 4.42950 4.51405 4.55981 4.64100 4.67869
4.72917 4.76923 4.90489 4.96228 5.09223 5.12011 5.18816 5.40205
5.60736 5.75302 5.77692 6.16728 6.39238 6.57583 6.99901 7.15526
7.40891 8.93804
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.038186 B = 0.006625 C = 0.006113
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 733.071862 B = 4225.251814 C = 4579.318299
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 C 0.194 3.806
3 N -0.536 5.536
4 C -0.041 4.041
5 C -0.026 4.026
6 C 0.143 3.857
7 H 0.082 0.918
8 C -0.127 4.127
9 C -0.136 4.136
10 C 0.201 3.799
11 H -0.012 1.012
12 C -0.555 4.555
13 H 0.071 0.929
14 C 0.020 3.980
15 N -0.902 5.902
16 Si 0.964 3.036
17 H -0.275 1.275
18 H -0.284 1.284
19 H -0.258 1.258
20 O -0.378 6.378
21 N -0.454 5.454
22 C 0.061 3.939
23 H 0.091 0.909
24 H 0.105 0.895
25 H 0.090 0.910
26 H 0.133 0.867
27 H 0.107 0.893
28 H 0.063 0.937
29 H 0.076 0.924
30 H 0.079 0.921
31 H 0.260 0.740
32 H 0.099 0.901
33 H 0.116 0.884
34 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.211 -9.575 6.204 17.455
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C -0.069 4.069
3 N -0.257 5.257
4 C -0.188 4.188
5 C -0.141 4.141
6 C 0.083 3.917
7 H 0.099 0.901
8 C -0.165 4.165
9 C -0.174 4.174
10 C 0.146 3.854
11 H 0.006 0.994
12 C -0.593 4.593
13 H 0.089 0.911
14 C -0.182 4.182
15 N -0.539 5.539
16 Si 0.788 3.212
17 H -0.201 1.201
18 H -0.210 1.210
19 H -0.182 1.182
20 O -0.297 6.297
21 N -0.139 5.139
22 C -0.080 4.080
23 H 0.110 0.890
24 H 0.124 0.876
25 H 0.109 0.891
26 H 0.151 0.849
27 H 0.125 0.875
28 H 0.082 0.918
29 H 0.094 0.906
30 H 0.098 0.902
31 H 0.069 0.931
32 H 0.118 0.882
33 H 0.135 0.865
34 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -13.570 -8.738 5.869 17.174
hybrid contribution 1.401 -0.186 -0.610 1.540
sum -12.169 -8.924 5.259 15.980
Atomic orbital electron populations
1.20344 0.81127 1.05477 1.04655 1.24204 0.97345 0.80862 1.04450
1.70112 1.02222 1.30725 1.22595 1.21732 0.94039 0.93551 1.09479
1.21718 0.86632 0.95597 1.10173 1.20937 0.84577 0.92669 0.93529
0.90060 1.23035 0.95480 1.03300 0.94707 1.23211 0.95160 1.00181
0.98820 1.20464 0.84856 0.92286 0.87793 0.99421 1.21557 1.02468
1.20926 1.14320 0.91067 1.26026 1.00088 0.94028 0.98069 1.70220
1.36826 1.21892 1.24983 0.85493 0.79441 0.77493 0.78789 1.20071
1.20968 1.18165 1.88831 1.25809 1.79170 1.35855 1.45261 1.04508
1.09274 1.54829 1.22432 1.03120 0.77014 1.05406 0.89004 0.87600
0.89129 0.84916 0.87453 0.91776 0.90559 0.90227 0.93129 0.88242
0.86544 0.89500
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.05 9.97 71.24 0.71 -0.33 16
2 C 0.19 6.13 7.90 138.13 1.09 7.22 16
3 N -0.54 -22.53 11.25 -188.13 -2.12 -24.65 16
4 C -0.04 -1.93 11.45 83.53 0.96 -0.97 16
5 C -0.03 -1.04 5.89 40.95 0.24 -0.80 16
6 C 0.14 5.78 3.83 30.32 0.12 5.90 16
7 H 0.08 2.91 7.13 -2.39 -0.02 2.89 16
8 C -0.13 -4.34 6.53 31.86 0.21 -4.13 16
9 C -0.14 -5.42 6.53 32.05 0.21 -5.21 16
10 C 0.20 10.74 3.27 30.51 0.10 10.84 16
11 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16
12 C -0.56 -31.75 8.80 25.60 0.23 -31.53 16
13 H 0.07 3.84 7.77 -2.91 -0.02 3.81 16
14 C 0.02 1.17 5.42 84.65 0.46 1.62 16
15 N -0.90 -56.75 12.93 21.45 0.28 -56.47 16
16 Si 0.96 44.79 29.54 68.60 2.03 46.81 16
17 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16
18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16
19 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16
20 O -0.38 -20.47 9.92 -148.98 -1.48 -21.94 16
21 N -0.45 -13.76 3.15 -523.04 -1.65 -15.41 16
22 C 0.06 1.04 10.61 127.77 1.36 2.39 16
23 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16
24 H 0.11 1.13 7.72 -2.39 -0.02 1.12 16
25 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16
26 H 0.13 7.02 8.06 -2.91 -0.02 7.00 16
27 H 0.11 2.72 8.14 -2.39 -0.02 2.71 16
28 H 0.06 2.24 7.85 -2.38 -0.02 2.22 16
29 H 0.08 2.90 8.05 -2.39 -0.02 2.88 16
30 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16
31 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16
32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
33 H 0.12 1.23 7.67 -2.39 -0.02 1.22 16
34 H 0.09 1.50 7.14 -2.39 -0.02 1.48 16
Total: -1.00 -78.68 286.85 3.81 -74.87
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: 1.08 Total: 11.79 kcal
Atomic # 6 Polarization: -20.67 SS G_CDS: 5.67 Total: -15.00 kcal
Atomic # 7 Polarization: -93.04 SS G_CDS: -3.49 Total: -96.52 kcal
Atomic # 8 Polarization: -20.47 SS G_CDS: -1.48 Total: -21.94 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal
Total: -78.68 3.81 -74.87 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689738318.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.765 kcal
(2) G-P(sol) polarization free energy of solvation -78.677 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.866 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds