Wall clock time and date at job start Mon Mar 30 2020 03:27:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52994 * 109.47054 * 2 1
4 4 H 1.09000 * 109.47692 * 305.89437 * 3 2 1
5 5 C 1.50706 * 109.47039 * 185.89379 * 3 2 1
6 6 H 1.07997 * 119.99913 * 275.19606 * 5 3 2
7 7 C 1.37875 * 120.00091 * 95.19185 * 5 3 2
8 8 N 1.31513 * 120.00131 * 184.64447 * 7 5 3
9 9 Si 1.86802 * 119.99760 * 4.65024 * 7 5 3
10 10 H 1.48502 * 109.47073 * 84.85723 * 9 7 5
11 11 H 1.48505 * 109.47003 * 204.85272 * 9 7 5
12 12 H 1.48500 * 109.47149 * 324.85441 * 9 7 5
13 13 C 1.50704 * 109.47070 * 65.89666 * 3 2 1
14 14 O 1.21416 * 119.99991 * 94.99757 * 13 3 2
15 15 C 1.41484 * 119.99751 * 274.99539 * 13 3 2
16 16 C 1.38171 * 126.97351 * 0.02726 * 15 13 3
17 17 N 1.33158 * 107.54638 * 179.97438 * 16 15 13
18 18 C 1.30923 * 109.82569 * 359.97438 * 17 16 15
19 19 C 1.50701 * 125.25308 * 179.97438 * 18 17 16
20 20 N 1.34389 * 109.49252 * 359.76535 * 18 17 16
21 21 C 1.46498 * 126.45888 * 180.26744 * 20 18 17
22 22 H 1.08995 * 109.47281 * 300.00120 * 1 2 3
23 23 H 1.09001 * 109.46818 * 59.99751 * 1 2 3
24 24 H 1.09000 * 109.47219 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.46887 * 239.99972 * 2 1 3
26 26 H 1.09001 * 109.46818 * 120.00249 * 2 1 3
27 27 H 0.96991 * 120.00218 * 180.02562 * 8 7 5
28 28 H 1.08006 * 126.23380 * 359.92269 * 16 15 13
29 29 H 1.09011 * 109.46750 * 90.03122 * 19 18 17
30 30 H 1.08996 * 109.47345 * 210.02538 * 19 18 17
31 31 H 1.09003 * 109.47655 * 330.03285 * 19 18 17
32 32 H 1.09006 * 109.46755 * 270.12479 * 21 20 18
33 33 H 1.08997 * 109.47134 * 30.12530 * 21 20 18
34 34 H 1.08998 * 109.47041 * 150.12758 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5931 1.9859 -0.8325
5 6 3.5400 1.4450 -0.1459
6 1 4.1674 1.3293 0.7254
7 6 4.1112 1.5948 -1.3918
8 7 5.4158 1.5057 -1.5321
9 14 3.0320 1.9245 -2.8805
10 1 2.7615 3.3811 -2.9829
11 1 3.7280 1.4628 -4.1084
12 1 1.7487 1.1918 -2.7336
13 6 1.6604 2.1095 1.2970
14 8 2.4495 2.1367 2.2193
15 6 0.3844 2.7040 1.4397
16 6 -0.6188 2.7563 0.4911
17 7 -1.6496 3.4025 1.0322
18 6 -1.3572 3.7576 2.2579
19 6 -2.2745 4.5086 3.1883
20 7 -0.1143 3.3451 2.5599
21 6 0.5822 3.5401 3.8338
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 5.8176 1.6115 -2.4085
28 1 -0.5747 2.3481 -0.5079
29 1 -2.8717 3.7987 3.7609
30 1 -1.6812 5.1175 3.8704
31 1 -2.9343 5.1525 2.6068
32 1 1.1325 4.4806 3.8067
33 1 -0.1452 3.5679 4.6451
34 1 1.2776 2.7169 3.9974
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000689762621.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:50
Heat of formation + Delta-G solvation = 13.427334 kcal
Electronic energy + Delta-G solvation = -17163.251855 eV
Core-core repulsion = 14483.235807 eV
Total energy + Delta-G solvation = -2680.016048 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-42.04933 -38.41511 -34.83008 -33.67492 -32.24713 -31.57082 -28.45836 -27.73936
-26.72848 -23.72461 -22.27753 -21.42751 -19.55071 -18.41611 -17.27570 -16.30304
-16.02285 -15.18466 -14.77407 -14.22724 -13.89527 -13.46919 -13.35991 -13.08215
-12.89736 -12.69440 -12.39954 -12.37614 -12.29400 -11.99759 -11.87207 -10.94617
-10.82489 -10.36211 -10.05253 -9.87940 -9.80986 -9.52639 -9.15663 -8.75661
-8.52738 -8.07148 -6.10405 -4.11153 1.42801 2.80195 2.97567 3.26426
3.34005 3.35430 3.73989 4.37616 4.42387 4.72768 4.82361 5.09972
5.21520 5.23837 5.35263 5.45520 5.58218 5.62452 5.75959 5.84522
5.90298 6.00539 6.13704 6.44076 6.53142 6.56612 6.75130 6.79448
7.03175 7.20611 7.23375 7.58980 8.07751 8.38950 8.56071 9.03379
9.49416 11.02332
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031171 B = 0.008263 C = 0.007705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.046735 B = 3387.746378 C = 3633.315433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C -0.107 4.107
3 C -0.010 4.010
4 H 0.054 0.946
5 C -0.507 4.507
6 H 0.086 0.914
7 C 0.074 3.926
8 N -0.894 5.894
9 Si 0.867 3.133
10 H -0.274 1.274
11 H -0.286 1.286
12 H -0.259 1.259
13 C 0.431 3.569
14 O -0.468 6.468
15 C -0.108 4.108
16 C 0.054 3.946
17 N -0.500 5.500
18 C 0.210 3.790
19 C -0.068 4.068
20 N -0.427 5.427
21 C 0.067 3.933
22 H 0.052 0.948
23 H 0.051 0.949
24 H 0.044 0.956
25 H 0.067 0.933
26 H 0.056 0.944
27 H 0.265 0.735
28 H 0.184 0.816
29 H 0.080 0.920
30 H 0.073 0.927
31 H 0.091 0.909
32 H 0.079 0.921
33 H 0.082 0.918
34 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.071 3.517 7.521 16.338
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.145 4.145
3 C -0.030 4.030
4 H 0.072 0.928
5 C -0.545 4.545
6 H 0.104 0.896
7 C -0.128 4.128
8 N -0.531 5.531
9 Si 0.693 3.307
10 H -0.199 1.199
11 H -0.212 1.212
12 H -0.184 1.184
13 C 0.310 3.690
14 O -0.344 6.344
15 C -0.221 4.221
16 C -0.101 4.101
17 N -0.219 5.219
18 C -0.051 4.051
19 C -0.127 4.127
20 N -0.108 5.108
21 C -0.075 4.075
22 H 0.071 0.929
23 H 0.070 0.930
24 H 0.063 0.937
25 H 0.086 0.914
26 H 0.075 0.925
27 H 0.075 0.925
28 H 0.201 0.799
29 H 0.099 0.901
30 H 0.092 0.908
31 H 0.110 0.890
32 H 0.097 0.903
33 H 0.101 0.899
34 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -14.122 3.731 7.683 16.504
hybrid contribution 0.323 0.088 -0.576 0.667
sum -13.799 3.819 7.107 15.984
Atomic orbital electron populations
1.22251 0.97982 1.00706 1.01247 1.21686 0.92823 0.97764 1.02244
1.19495 0.99109 0.93205 0.91227 0.92842 1.20814 0.87781 1.50270
0.95586 0.89590 1.25026 0.94865 0.94425 0.98480 1.69884 1.09834
1.49327 1.24027 0.87004 0.81482 0.79402 0.82789 1.19916 1.21198
1.18365 1.21048 0.81666 0.75363 0.90939 1.90401 1.51545 1.50959
1.41521 1.21624 1.00921 1.10355 0.89226 1.23290 0.88492 0.98675
0.99603 1.70023 1.28976 1.16787 1.06142 1.23377 0.85482 1.01910
0.94325 1.20214 0.96997 0.98911 0.96538 1.45333 1.12926 1.40198
1.12350 1.22243 0.98137 1.05112 0.81998 0.92902 0.92968 0.93682
0.91387 0.92547 0.92472 0.79941 0.90135 0.90840 0.89036 0.90253
0.89894 0.87691
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.78 8.36 37.16 0.31 -2.47 16
2 C -0.11 -2.20 5.37 -26.73 -0.14 -2.34 16
3 C -0.01 -0.24 1.46 -92.92 -0.14 -0.37 16
4 H 0.05 1.21 4.50 -51.93 -0.23 0.98 16
5 C -0.51 -14.31 8.55 -34.44 -0.29 -14.60 16
6 H 0.09 2.74 7.50 -52.49 -0.39 2.34 16
7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
8 N -0.89 -27.16 13.96 55.43 0.77 -26.38 16
9 Si 0.87 20.75 26.98 -169.99 -4.59 16.16 16
10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16
11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16
12 H -0.26 -5.71 6.82 56.52 0.39 -5.32 16
13 C 0.43 9.56 5.76 -33.07 -0.19 9.37 16
14 O -0.47 -11.32 14.33 5.44 0.08 -11.24 16
15 C -0.11 -2.06 5.73 -83.70 -0.48 -2.54 16
16 C 0.05 0.97 8.96 -17.00 -0.15 0.82 16
17 N -0.50 -8.51 11.19 -10.26 -0.11 -8.62 16
18 C 0.21 3.09 7.86 -155.65 -1.22 1.86 16
19 C -0.07 -0.63 9.94 36.01 0.36 -0.27 16
20 N -0.43 -6.85 3.18 -118.54 -0.38 -7.23 16
21 C 0.07 0.85 10.22 59.85 0.61 1.46 16
22 H 0.05 0.90 5.28 -51.93 -0.27 0.63 16
23 H 0.05 0.83 6.77 -51.93 -0.35 0.48 16
24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
25 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16
26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
28 H 0.18 3.05 5.73 -52.48 -0.30 2.75 16
29 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16
30 H 0.07 0.53 7.66 -51.93 -0.40 0.13 16
31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16
32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16
33 H 0.08 0.72 7.62 -51.93 -0.40 0.32 16
34 H 0.10 1.53 6.44 -51.93 -0.33 1.20 16
LS Contribution 277.02 15.07 4.17 4.17
Total: -1.00 -33.13 277.02 -5.86 -38.98
By element:
Atomic # 1 Polarization: 5.59 SS G_CDS: -4.37 Total: 1.22 kcal
Atomic # 6 Polarization: -5.63 SS G_CDS: -1.44 Total: -7.06 kcal
Atomic # 7 Polarization: -42.52 SS G_CDS: 0.28 Total: -42.24 kcal
Atomic # 8 Polarization: -11.32 SS G_CDS: 0.08 Total: -11.24 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -4.59 Total: 16.16 kcal
Total LS contribution 4.17 Total: 4.17 kcal
Total: -33.13 -5.86 -38.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689762621.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.412 kcal
(2) G-P(sol) polarization free energy of solvation -33.126 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.286 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.858 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.985 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds