Wall clock time and date at job start Mon Mar 30 2020 03:27:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.52994 * 109.47054 * 2 1
4 4 H 1.09000 * 109.47692 * 305.89437 * 3 2 1
5 5 C 1.50706 * 109.47039 * 185.89379 * 3 2 1
6 6 H 1.07997 * 119.99913 * 275.19606 * 5 3 2
7 7 C 1.37875 * 120.00091 * 95.19185 * 5 3 2
8 8 N 1.31513 * 120.00131 * 184.64447 * 7 5 3
9 9 Si 1.86802 * 119.99760 * 4.65024 * 7 5 3
10 10 H 1.48502 * 109.47073 * 84.85723 * 9 7 5
11 11 H 1.48505 * 109.47003 * 204.85272 * 9 7 5
12 12 H 1.48500 * 109.47149 * 324.85441 * 9 7 5
13 13 C 1.50704 * 109.47070 * 65.89666 * 3 2 1
14 14 O 1.21416 * 119.99991 * 94.99757 * 13 3 2
15 15 C 1.41484 * 119.99751 * 274.99539 * 13 3 2
16 16 C 1.38171 * 126.97351 * 0.02726 * 15 13 3
17 17 N 1.33158 * 107.54638 * 179.97438 * 16 15 13
18 18 C 1.30923 * 109.82569 * 359.97438 * 17 16 15
19 19 C 1.50701 * 125.25308 * 179.97438 * 18 17 16
20 20 N 1.34389 * 109.49252 * 359.76535 * 18 17 16
21 21 C 1.46498 * 126.45888 * 180.26744 * 20 18 17
22 22 H 1.08995 * 109.47281 * 300.00120 * 1 2 3
23 23 H 1.09001 * 109.46818 * 59.99751 * 1 2 3
24 24 H 1.09000 * 109.47219 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.46887 * 239.99972 * 2 1 3
26 26 H 1.09001 * 109.46818 * 120.00249 * 2 1 3
27 27 H 0.96991 * 120.00218 * 180.02562 * 8 7 5
28 28 H 1.08006 * 126.23380 * 359.92269 * 16 15 13
29 29 H 1.09011 * 109.46750 * 90.03122 * 19 18 17
30 30 H 1.08996 * 109.47345 * 210.02538 * 19 18 17
31 31 H 1.09003 * 109.47655 * 330.03285 * 19 18 17
32 32 H 1.09006 * 109.46755 * 270.12479 * 21 20 18
33 33 H 1.08997 * 109.47134 * 30.12530 * 21 20 18
34 34 H 1.08998 * 109.47041 * 150.12758 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5931 1.9859 -0.8325
5 6 3.5400 1.4450 -0.1459
6 1 4.1674 1.3293 0.7254
7 6 4.1112 1.5948 -1.3918
8 7 5.4158 1.5057 -1.5321
9 14 3.0320 1.9245 -2.8805
10 1 2.7615 3.3811 -2.9829
11 1 3.7280 1.4628 -4.1084
12 1 1.7487 1.1918 -2.7336
13 6 1.6604 2.1095 1.2970
14 8 2.4495 2.1367 2.2193
15 6 0.3844 2.7040 1.4397
16 6 -0.6188 2.7563 0.4911
17 7 -1.6496 3.4025 1.0322
18 6 -1.3572 3.7576 2.2579
19 6 -2.2745 4.5086 3.1883
20 7 -0.1143 3.3451 2.5599
21 6 0.5822 3.5401 3.8338
22 1 -0.3633 0.5138 0.8899
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0277 -0.0005
25 1 1.8933 -0.5138 -0.8900
26 1 1.8933 -0.5139 0.8900
27 1 5.8176 1.6115 -2.4085
28 1 -0.5747 2.3481 -0.5079
29 1 -2.8717 3.7987 3.7609
30 1 -1.6812 5.1175 3.8704
31 1 -2.9343 5.1525 2.6068
32 1 1.1325 4.4806 3.8067
33 1 -0.1452 3.5679 4.6451
34 1 1.2776 2.7169 3.9974
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000689762621.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:50
Heat of formation + Delta-G solvation = -8.884687 kcal
Electronic energy + Delta-G solvation = -17164.219377 eV
Core-core repulsion = 14483.235807 eV
Total energy + Delta-G solvation = -2680.983570 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-43.32415 -40.11566 -36.49695 -35.01193 -34.19961 -32.73889 -30.11512 -29.06946
-27.84476 -25.51307 -23.80326 -22.89185 -20.78300 -20.02056 -19.20656 -17.79335
-17.30495 -16.87964 -16.33174 -15.89585 -15.46718 -14.78185 -14.72791 -14.29688
-14.22574 -13.99384 -13.79347 -13.76034 -13.55415 -13.25870 -13.13567 -12.79133
-12.47661 -11.99498 -11.77984 -11.67934 -11.27461 -11.15485 -10.76199 -10.74917
-10.37083 -9.39211 -8.30178 -6.37580 0.00708 1.37357 1.38414 1.49645
1.64859 1.69072 2.21896 2.34832 3.02746 3.35353 3.47785 3.83009
3.99301 4.25410 4.26794 4.32297 4.37780 4.43690 4.55332 4.65002
4.72808 4.74122 4.79438 5.04692 5.12446 5.17961 5.20327 5.34583
5.47398 5.50569 5.63621 6.10338 6.25315 6.71448 6.72910 6.92647
7.27029 8.86980
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031171 B = 0.008263 C = 0.007705
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 898.046735 B = 3387.746378 C = 3633.315433
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.103 4.103
3 C -0.013 4.013
4 H 0.067 0.933
5 C -0.517 4.517
6 H 0.027 0.973
7 C 0.013 3.987
8 N -0.948 5.948
9 Si 0.935 3.065
10 H -0.266 1.266
11 H -0.284 1.284
12 H -0.222 1.222
13 C 0.432 3.568
14 O -0.509 6.509
15 C -0.149 4.149
16 C 0.069 3.931
17 N -0.522 5.522
18 C 0.232 3.768
19 C -0.070 4.070
20 N -0.432 5.432
21 C 0.063 3.937
22 H 0.050 0.950
23 H 0.069 0.931
24 H 0.068 0.932
25 H 0.063 0.937
26 H 0.039 0.961
27 H 0.268 0.732
28 H 0.194 0.806
29 H 0.105 0.895
30 H 0.099 0.901
31 H 0.102 0.898
32 H 0.085 0.915
33 H 0.130 0.870
34 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.139 4.480 7.297 20.059
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.142 4.142
3 C -0.033 4.033
4 H 0.085 0.915
5 C -0.555 4.555
6 H 0.045 0.955
7 C -0.185 4.185
8 N -0.587 5.587
9 Si 0.757 3.243
10 H -0.191 1.191
11 H -0.210 1.210
12 H -0.144 1.144
13 C 0.314 3.686
14 O -0.388 6.388
15 C -0.262 4.262
16 C -0.087 4.087
17 N -0.241 5.241
18 C -0.029 4.029
19 C -0.128 4.128
20 N -0.113 5.113
21 C -0.078 4.078
22 H 0.069 0.931
23 H 0.088 0.912
24 H 0.087 0.913
25 H 0.082 0.918
26 H 0.058 0.942
27 H 0.077 0.923
28 H 0.210 0.790
29 H 0.123 0.877
30 H 0.117 0.883
31 H 0.121 0.879
32 H 0.103 0.897
33 H 0.148 0.852
34 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -18.213 4.688 7.488 20.243
hybrid contribution 1.577 -0.171 -0.357 1.626
sum -16.636 4.517 7.131 18.655
Atomic orbital electron populations
1.22141 0.94360 1.02588 1.01969 1.21553 0.95916 0.95377 1.01318
1.19488 0.95702 0.95395 0.92750 0.91471 1.20943 0.90418 1.50226
0.93887 0.95482 1.26016 0.96330 0.93928 1.02185 1.70059 1.12341
1.51202 1.25102 0.85911 0.80800 0.79970 0.77662 1.19067 1.20951
1.14395 1.20915 0.82898 0.74860 0.89919 1.90390 1.53134 1.52874
1.42442 1.21031 1.00091 1.13526 0.91516 1.23511 0.88109 0.97405
0.99651 1.70112 1.28806 1.17798 1.07432 1.24490 0.84955 0.99282
0.94200 1.20544 0.96650 0.99357 0.96206 1.45521 1.13460 1.39809
1.12469 1.22433 0.99100 1.04203 0.82066 0.93119 0.91244 0.91256
0.91795 0.94166 0.92308 0.78962 0.87705 0.88257 0.87893 0.89657
0.85151 0.90420
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.77 8.36 71.98 0.60 -4.17 16
2 C -0.10 -4.21 5.37 30.59 0.16 -4.05 16
3 C -0.01 -0.63 1.46 -12.28 -0.02 -0.64 16
4 H 0.07 2.95 4.50 -2.39 -0.01 2.94 16
5 C -0.52 -30.70 8.55 25.60 0.22 -30.48 16
6 H 0.03 1.87 7.50 -2.91 -0.02 1.84 16
7 C 0.01 0.74 5.47 84.65 0.46 1.21 16
8 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16
9 Si 0.94 42.49 26.98 68.60 1.85 44.34 16
10 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16
11 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16
12 H -0.22 -8.67 6.82 99.48 0.68 -7.99 16
13 C 0.43 19.61 5.76 26.49 0.15 19.76 16
14 O -0.51 -26.08 14.33 -3.45 -0.05 -26.13 16
15 C -0.15 -5.54 5.73 38.89 0.22 -5.31 16
16 C 0.07 2.31 8.96 84.48 0.76 3.07 16
17 N -0.52 -16.02 11.19 -186.38 -2.09 -18.10 16
18 C 0.23 5.97 7.86 138.21 1.09 7.05 16
19 C -0.07 -0.92 9.94 71.24 0.71 -0.21 16
20 N -0.43 -12.96 3.18 -528.95 -1.68 -14.64 16
21 C 0.06 1.48 10.22 127.77 1.31 2.79 16
22 H 0.05 1.61 5.28 -2.39 -0.01 1.60 16
23 H 0.07 1.93 6.77 -2.39 -0.02 1.91 16
24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16
25 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16
26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16
27 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16
28 H 0.19 5.79 5.73 -2.91 -0.02 5.77 16
29 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16
30 H 0.10 0.86 7.66 -2.39 -0.02 0.85 16
31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16
32 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16
33 H 0.13 1.74 7.62 -2.39 -0.02 1.73 16
34 H 0.08 2.30 6.44 -2.39 -0.02 2.29 16
Total: -1.00 -77.49 277.02 5.07 -72.42
By element:
Atomic # 1 Polarization: 12.02 SS G_CDS: 1.08 Total: 13.10 kcal
Atomic # 6 Polarization: -16.66 SS G_CDS: 5.66 Total: -10.99 kcal
Atomic # 7 Polarization: -89.27 SS G_CDS: -3.47 Total: -92.74 kcal
Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal
Atomic # 14 Polarization: 42.49 SS G_CDS: 1.85 Total: 44.34 kcal
Total: -77.49 5.07 -72.42 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000689762621.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 63.531 kcal
(2) G-P(sol) polarization free energy of solvation -77.489 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.959 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -8.885 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds