Wall clock time and date at job start Mon Mar 30 2020 03:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09004 * 109.47165 * 2 1
4 4 O 1.42908 * 109.47158 * 119.99435 * 2 1 3
5 5 C 1.50698 * 109.47474 * 239.99488 * 2 1 3
6 6 C 1.38065 * 119.57372 * 124.99940 * 5 2 1
7 7 C 1.38837 * 119.33182 * 179.97438 * 6 5 2
8 8 C 1.38343 * 118.50221 * 0.02562 * 7 6 5
9 9 C 1.39093 * 119.09864 * 359.97110 * 8 7 6
10 10 N 1.39005 * 119.70672 * 180.02562 * 9 8 7
11 11 C 1.46500 * 120.00265 * 185.02775 * 10 9 8
12 12 C 1.46511 * 119.99753 * 5.02350 * 10 9 8
13 13 C 1.50694 * 109.46688 * 90.00175 * 12 10 9
14 14 H 1.07999 * 120.00185 * 0.02562 * 13 12 10
15 15 C 1.37880 * 119.99717 * 179.97438 * 13 12 10
16 16 N 1.31515 * 120.00031 * 179.97438 * 15 13 12
17 17 Si 1.86796 * 120.00059 * 0.02562 * 15 13 12
18 18 H 1.48495 * 109.47314 * 89.99702 * 17 15 13
19 19 H 1.48503 * 109.47248 * 210.00002 * 17 15 13
20 20 H 1.48501 * 109.47053 * 329.99404 * 17 15 13
21 21 N 1.31942 * 119.57206 * 304.97763 * 5 2 1
22 22 H 1.09005 * 109.46719 * 180.02562 * 1 2 3
23 23 H 1.09002 * 109.47476 * 300.00543 * 1 2 3
24 24 H 1.09000 * 109.46851 * 60.00567 * 1 2 3
25 25 H 0.96691 * 113.99603 * 59.99983 * 4 2 1
26 26 H 1.08009 * 120.33529 * 359.72843 * 6 5 2
27 27 H 1.07998 * 120.75008 * 179.97438 * 7 6 5
28 28 H 1.07996 * 120.45087 * 180.02562 * 8 7 6
29 29 H 1.09002 * 109.47379 * 89.99787 * 11 10 9
30 30 H 1.09003 * 109.47194 * 209.99568 * 11 10 9
31 31 H 1.09001 * 109.47043 * 329.99720 * 11 10 9
32 32 H 1.09003 * 109.46718 * 209.99983 * 12 10 9
33 33 H 1.08993 * 109.46835 * 330.00078 * 12 10 9
34 34 H 0.97000 * 119.99899 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 8 2.0063 -0.6736 1.1669
5 6 2.0323 -0.7105 -1.2304
6 6 2.9089 -0.0651 -2.0797
7 6 3.3690 -0.7246 -3.2115
8 6 2.9284 -2.0143 -3.4489
9 6 2.0450 -2.6035 -2.5506
10 7 1.5946 -3.8990 -2.7765
11 6 0.5809 -4.4861 -1.8968
12 6 2.1338 -4.6774 -3.8945
13 6 3.3437 -5.4480 -3.4327
14 1 3.6774 -5.3664 -2.4088
15 6 4.0240 -6.2579 -4.3172
16 7 5.0802 -6.9300 -3.9144
17 14 3.4464 -6.3994 -6.0879
18 1 4.1149 -5.3601 -6.9113
19 1 3.7898 -7.7448 -6.6146
20 1 1.9751 -6.2061 -6.1456
21 7 1.6292 -1.9414 -1.4817
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3634 0.5139 0.8899
24 1 -0.3633 0.5137 -0.8900
25 1 1.7210 -1.5950 1.2331
26 1 3.2302 0.9441 -1.8680
27 1 4.0547 -0.2414 -3.8917
28 1 3.2665 -2.5567 -4.3195
29 1 -0.4120 -4.2673 -2.2898
30 1 0.7228 -5.5658 -1.8486
31 1 0.6776 -4.0620 -0.8973
32 1 1.3747 -5.3731 -4.2523
33 1 2.4187 -4.0035 -4.7023
34 1 5.5591 -7.4995 -4.5367
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000690776503.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:38:51
Heat of formation + Delta-G solvation = -28.383887 kcal
Electronic energy + Delta-G solvation = -16665.854490 eV
Core-core repulsion = 13984.025371 eV
Total energy + Delta-G solvation = -2681.829119 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.29219 -38.54197 -37.13678 -34.74574 -33.37553 -32.36416 -30.32496 -30.20133
-27.04236 -25.00077 -24.63984 -22.38697 -21.82121 -19.12083 -18.59305 -17.69119
-17.04361 -16.73705 -16.15414 -15.90557 -15.75853 -15.30708 -14.90203 -14.41785
-14.26636 -14.09044 -13.58785 -13.27518 -13.18917 -13.01241 -12.74109 -12.62934
-12.31017 -12.08996 -11.97169 -11.75379 -11.36035 -10.85180 -10.82680 -10.42800
-10.18792 -8.36046 -8.26655 -6.42136 0.38495 0.64096 1.35481 1.36728
1.47337 2.23410 2.30137 2.97783 2.98844 3.37855 3.68035 3.83935
4.14694 4.27617 4.36084 4.43966 4.47945 4.63324 4.63741 4.71227
4.81632 4.84930 4.95542 5.00402 5.06491 5.22456 5.36846 5.40899
5.48459 5.78782 5.96375 6.35660 6.61921 6.66750 6.68882 7.18969
7.32974 8.82505
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.035895 B = 0.006481 C = 0.006190
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 779.865399 B = 4319.377219 C = 4522.035062
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C 0.161 3.839
3 H 0.133 0.867
4 O -0.571 6.571
5 C 0.121 3.879
6 C -0.235 4.235
7 C -0.036 4.036
8 C -0.256 4.256
9 C 0.393 3.607
10 N -0.606 5.606
11 C 0.107 3.893
12 C 0.234 3.766
13 C -0.542 4.542
14 H 0.021 0.979
15 C 0.014 3.986
16 N -0.946 5.946
17 Si 0.948 3.052
18 H -0.262 1.262
19 H -0.281 1.281
20 H -0.240 1.240
21 N -0.552 5.552
22 H 0.054 0.946
23 H 0.079 0.921
24 H 0.068 0.932
25 H 0.385 0.615
26 H 0.159 0.841
27 H 0.157 0.843
28 H 0.122 0.878
29 H 0.057 0.943
30 H 0.056 0.944
31 H 0.070 0.930
32 H 0.044 0.956
33 H 0.038 0.962
34 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.468 13.954 1.798 16.959
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C 0.102 3.898
3 H 0.150 0.850
4 O -0.377 6.377
5 C -0.018 4.018
6 C -0.258 4.258
7 C -0.061 4.061
8 C -0.281 4.281
9 C 0.158 3.842
10 N -0.316 5.316
11 C -0.036 4.036
12 C 0.112 3.888
13 C -0.581 4.581
14 H 0.040 0.960
15 C -0.184 4.184
16 N -0.585 5.585
17 Si 0.770 3.230
18 H -0.187 1.187
19 H -0.207 1.207
20 H -0.164 1.164
21 N -0.272 5.272
22 H 0.073 0.927
23 H 0.098 0.902
24 H 0.087 0.913
25 H 0.234 0.766
26 H 0.177 0.823
27 H 0.174 0.826
28 H 0.140 0.860
29 H 0.076 0.924
30 H 0.075 0.925
31 H 0.089 0.911
32 H 0.062 0.938
33 H 0.056 0.944
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -9.731 13.776 2.394 17.036
hybrid contribution 0.745 -1.008 -1.361 1.850
sum -8.986 12.768 1.034 15.648
Atomic orbital electron populations
1.22320 0.94170 1.02899 1.03120 1.20963 0.94364 0.95297 0.79168
0.84982 1.86493 1.77908 1.30294 1.42985 1.22116 0.93084 0.89669
0.96943 1.21862 1.03237 1.03268 0.97466 1.21612 0.95657 0.92391
0.96471 1.21661 1.04843 0.98351 1.03233 1.18544 0.90028 0.86035
0.89597 1.46568 1.42462 1.10449 1.32168 1.21464 0.89954 0.97839
0.94328 1.19473 0.93203 0.90651 0.85499 1.21607 1.12257 1.27017
0.97181 0.96030 1.25886 0.94369 0.94213 1.03974 1.70069 1.20471
1.30160 1.37820 0.85705 0.80617 0.78228 0.78404 1.18653 1.20654
1.16353 1.66812 1.30422 1.10352 1.19596 0.92651 0.90173 0.91307
0.76628 0.82338 0.82553 0.85992 0.92442 0.92475 0.91147 0.93781
0.94384 0.92192
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.37 9.39 71.98 0.68 -2.69 16
2 C 0.16 3.80 3.91 29.85 0.12 3.91 16
3 H 0.13 2.43 7.86 -2.38 -0.02 2.41 16
4 O -0.57 -15.35 13.33 -148.98 -1.99 -17.34 16
5 C 0.12 3.67 5.77 42.50 0.25 3.92 16
6 C -0.24 -6.54 9.70 22.37 0.22 -6.33 16
7 C -0.04 -1.10 10.17 22.44 0.23 -0.87 16
8 C -0.26 -9.92 9.27 22.50 0.21 -9.71 16
9 C 0.39 16.09 7.37 133.04 0.98 17.08 16
10 N -0.61 -25.86 2.97 -733.21 -2.18 -28.04 16
11 C 0.11 3.85 10.50 127.77 1.34 5.19 16
12 C 0.23 10.84 4.07 85.63 0.35 11.19 16
13 C -0.54 -30.84 9.94 25.60 0.25 -30.59 16
14 H 0.02 1.42 8.06 -2.91 -0.02 1.40 16
15 C 0.01 0.79 5.47 84.66 0.46 1.25 16
16 N -0.95 -58.37 13.96 21.45 0.30 -58.07 16
17 Si 0.95 41.62 27.47 68.60 1.88 43.50 16
18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16
19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16
20 H -0.24 -9.53 6.54 99.48 0.65 -8.88 16
21 N -0.55 -19.92 8.58 -181.34 -1.56 -21.48 16
22 H 0.05 1.28 7.95 -2.38 -0.02 1.26 16
23 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16
24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
25 H 0.38 9.71 9.02 -74.06 -0.67 9.04 16
26 H 0.16 3.18 7.94 -2.91 -0.02 3.15 16
27 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16
28 H 0.12 4.98 6.02 -2.91 -0.02 4.96 16
29 H 0.06 1.77 8.14 -2.39 -0.02 1.76 16
30 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16
31 H 0.07 2.44 7.30 -2.39 -0.02 2.43 16
32 H 0.04 1.94 7.13 -2.39 -0.02 1.93 16
33 H 0.04 1.70 5.40 -2.39 -0.01 1.69 16
34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16
Total: -1.00 -68.62 288.17 1.92 -66.70
By element:
Atomic # 1 Polarization: 22.00 SS G_CDS: 0.38 Total: 22.37 kcal
Atomic # 6 Polarization: -12.73 SS G_CDS: 5.08 Total: -7.64 kcal
Atomic # 7 Polarization: -104.16 SS G_CDS: -3.44 Total: -107.59 kcal
Atomic # 8 Polarization: -15.35 SS G_CDS: -1.99 Total: -17.34 kcal
Atomic # 14 Polarization: 41.62 SS G_CDS: 1.88 Total: 43.50 kcal
Total: -68.62 1.92 -66.70 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000690776503.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 38.313 kcal
(2) G-P(sol) polarization free energy of solvation -68.617 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.304 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.920 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.384 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds