Wall clock time and date at job start Mon Mar 30 2020 03:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.47064 * 2 1
4 4 N 1.46497 * 109.46955 * 185.02128 * 3 2 1
5 5 C 1.35596 * 125.67851 * 260.49668 * 4 3 2
6 6 C 1.35491 * 108.87952 * 179.83238 * 5 4 3
7 7 C 1.39806 * 107.87785 * 0.42576 * 6 5 4
8 8 C 1.37670 * 125.68848 * 80.80178 * 4 3 2
9 9 C 1.46552 * 126.23504 * 359.97438 * 8 4 3
10 10 O 1.21741 * 119.99892 * 353.43409 * 9 8 4
11 11 N 1.34772 * 119.99760 * 173.43581 * 9 8 4
12 12 C 1.46498 * 120.00417 * 4.51713 * 11 9 8
13 13 C 1.36878 * 120.00160 * 184.51653 * 11 9 8
14 14 H 1.08000 * 119.99782 * 22.58278 * 13 11 9
15 15 C 1.39002 * 120.00341 * 202.58486 * 13 11 9
16 16 N 1.31402 * 120.00203 * 15.87229 * 15 13 11
17 17 Si 1.86799 * 120.00243 * 195.86989 * 15 13 11
18 18 H 1.48501 * 109.46992 * 60.00321 * 17 15 13
19 19 H 1.48506 * 109.47368 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47435 * 299.99906 * 17 15 13
21 21 H 1.08997 * 109.46992 * 64.98467 * 1 2 3
22 22 H 1.09007 * 109.46991 * 184.98676 * 1 2 3
23 23 H 1.09005 * 109.47152 * 304.97907 * 1 2 3
24 24 H 1.09000 * 109.47290 * 240.00161 * 2 1 3
25 25 H 1.09004 * 109.46973 * 120.00114 * 2 1 3
26 26 H 1.08994 * 109.46717 * 65.02300 * 3 2 1
27 27 H 1.08994 * 109.47208 * 305.02006 * 3 2 1
28 28 H 1.07999 * 125.56290 * 359.96169 * 5 4 3
29 29 H 1.07997 * 126.06169 * 180.16689 * 6 5 4
30 30 H 1.08000 * 126.45663 * 179.73789 * 7 6 5
31 31 H 1.09004 * 109.47295 * 63.95680 * 12 11 9
32 32 H 1.08991 * 109.47462 * 183.96208 * 12 11 9
33 33 H 1.09007 * 109.46750 * 303.95802 * 12 11 9
34 34 H 0.96997 * 120.00385 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5000 1.4443 -0.1209
5 6 4.3780 1.5953 0.9013
6 6 5.6387 1.5397 0.4082
7 6 5.5509 1.3567 -0.9751
8 6 4.2091 1.2987 -1.2919
9 6 3.6421 1.1152 -2.6308
10 8 2.4424 0.9606 -2.7679
11 7 4.4490 1.1176 -3.7103
12 6 5.9014 1.2042 -3.5392
13 6 3.9115 1.0390 -4.9667
14 1 2.8869 1.3361 -5.1352
15 6 4.6843 0.5770 -6.0257
16 7 5.8033 -0.0699 -5.7893
17 14 4.1320 0.8755 -7.7850
18 1 4.0257 2.3365 -8.0293
19 1 5.1232 0.2875 -8.7216
20 1 2.8079 0.2395 -8.0030
21 1 -0.3633 0.4346 -0.9312
22 1 -0.3633 -1.0238 0.0893
23 1 -0.3634 0.5892 0.8421
24 1 1.8934 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 1.7520 1.9296 0.9315
27 1 1.6051 1.9816 -0.8416
28 1 4.1153 1.7348 1.9395
29 1 6.5500 1.6262 0.9814
30 1 6.3774 1.2759 -1.6655
31 1 6.2587 0.3189 -3.0131
32 1 6.3795 1.2636 -4.5168
33 1 6.1465 2.0946 -2.9602
34 1 6.3424 -0.3927 -6.5282
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701223352.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:07
Heat of formation + Delta-G solvation = 33.140906 kcal
Electronic energy + Delta-G solvation = -17060.486402 eV
Core-core repulsion = 14381.325198 eV
Total energy + Delta-G solvation = -2679.161204 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.73188 -37.83521 -35.14701 -34.33710 -31.84896 -30.60144 -28.74532 -26.42533
-25.47272 -24.65517 -21.62641 -21.09750 -20.04470 -18.42024 -17.10638 -16.27273
-15.39910 -14.77443 -14.63201 -14.28855 -14.03551 -13.63908 -13.39761 -12.85620
-12.48657 -12.31082 -11.98382 -11.67577 -11.54595 -11.45287 -11.36315 -11.12331
-10.96240 -10.53211 -10.44272 -10.36601 -10.00218 -8.94476 -8.45350 -8.13857
-7.64724 -7.51747 -6.34983 -3.88819 2.34916 3.18945 3.22587 3.25054
3.38198 3.40564 4.12547 4.41535 4.93882 5.04021 5.13833 5.22555
5.41456 5.47610 5.58599 5.82187 5.87023 5.93833 5.98380 6.10911
6.20168 6.41753 6.51558 6.59473 6.71851 6.77666 6.81178 7.31362
7.44072 7.54814 7.68536 7.86834 8.14713 8.49736 9.14329 9.38907
9.99437 10.64949
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028274 B = 0.007913 C = 0.006439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 990.078058 B = 3537.807527 C = 4347.349460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.133 4.133
3 C 0.111 3.889
4 N -0.416 5.416
5 C -0.019 4.019
6 C -0.212 4.212
7 C -0.191 4.191
8 C -0.004 4.004
9 C 0.501 3.499
10 O -0.598 6.598
11 N -0.422 5.422
12 C 0.074 3.926
13 C -0.297 4.297
14 H 0.100 0.900
15 C 0.027 3.973
16 N -0.872 5.872
17 Si 0.930 3.070
18 H -0.273 1.273
19 H -0.283 1.283
20 H -0.272 1.272
21 H 0.062 0.938
22 H 0.055 0.945
23 H 0.048 0.952
24 H 0.083 0.917
25 H 0.055 0.945
26 H 0.076 0.924
27 H 0.099 0.901
28 H 0.155 0.845
29 H 0.131 0.869
30 H 0.163 0.837
31 H 0.047 0.953
32 H 0.110 0.890
33 H 0.037 0.963
34 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.544 2.440 9.704 10.124
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.171 4.171
3 C -0.010 4.010
4 N -0.090 5.090
5 C -0.152 4.152
6 C -0.237 4.237
7 C -0.216 4.216
8 C -0.118 4.118
9 C 0.291 3.709
10 O -0.486 6.486
11 N -0.138 5.138
12 C -0.069 4.069
13 C -0.425 4.425
14 H 0.118 0.882
15 C -0.176 4.176
16 N -0.511 5.511
17 Si 0.756 3.244
18 H -0.198 1.198
19 H -0.208 1.208
20 H -0.197 1.197
21 H 0.081 0.919
22 H 0.074 0.926
23 H 0.068 0.932
24 H 0.102 0.898
25 H 0.074 0.926
26 H 0.094 0.906
27 H 0.117 0.883
28 H 0.172 0.828
29 H 0.149 0.851
30 H 0.180 0.820
31 H 0.066 0.934
32 H 0.128 0.872
33 H 0.055 0.945
34 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -2.352 2.271 9.490 10.037
hybrid contribution 0.017 -0.002 -0.619 0.619
sum -2.335 2.269 8.871 9.449
Atomic orbital electron populations
1.21632 0.95014 1.01582 1.01877 1.21797 0.96281 0.96022 1.03014
1.21898 0.77184 0.98840 1.03074 1.43988 1.06100 1.52969 1.05974
1.21750 0.89560 1.11084 0.92814 1.20761 0.95919 1.11820 0.95206
1.22428 0.95450 1.07629 0.96097 1.20659 0.91038 1.12253 0.87842
1.16878 0.86745 0.84915 0.82350 1.90600 1.14836 1.57066 1.86070
1.43220 1.05552 1.60506 1.04527 1.22409 0.82369 0.97601 1.04550
1.19655 0.99644 1.40911 0.82333 0.88203 1.25369 0.96370 0.95236
1.00639 1.69919 1.14607 1.33897 1.32686 0.85942 0.78531 0.78845
0.81080 1.19809 1.20809 1.19725 0.91926 0.92621 0.93247 0.89844
0.92628 0.90554 0.88309 0.82754 0.85103 0.81959 0.93441 0.87239
0.94469 0.91946
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.90 9.91 37.16 0.37 -1.53 16
2 C -0.13 -2.13 6.06 -26.73 -0.16 -2.29 16
3 C 0.11 1.83 5.34 -4.04 -0.02 1.81 16
4 N -0.42 -7.84 2.77 -112.85 -0.31 -8.15 16
5 C -0.02 -0.30 11.36 -16.87 -0.19 -0.50 16
6 C -0.21 -3.57 10.81 -39.98 -0.43 -4.00 16
7 C -0.19 -3.78 8.79 -39.09 -0.34 -4.12 16
8 C 0.00 -0.08 6.81 -81.98 -0.56 -0.64 16
9 C 0.50 13.04 7.58 -12.91 -0.10 12.94 16
10 O -0.60 -16.57 13.59 5.15 0.07 -16.50 16
11 N -0.42 -11.24 3.01 -123.74 -0.37 -11.62 16
12 C 0.07 1.72 7.46 59.85 0.45 2.17 16
13 C -0.30 -8.34 9.25 -15.02 -0.14 -8.48 16
14 H 0.10 2.89 7.47 -52.49 -0.39 2.50 16
15 C 0.03 0.71 5.01 -17.45 -0.09 0.62 16
16 N -0.87 -23.15 10.61 55.50 0.59 -22.56 16
17 Si 0.93 20.52 29.58 -169.99 -5.03 15.49 16
18 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16
19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16
20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16
21 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16
22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16
24 H 0.08 1.68 7.14 -51.93 -0.37 1.31 16
25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16
26 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16
27 H 0.10 1.84 7.03 -51.93 -0.37 1.48 16
28 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16
29 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16
30 H 0.16 3.08 4.09 -52.49 -0.21 2.87 16
31 H 0.05 1.08 6.85 -51.93 -0.36 0.72 16
32 H 0.11 2.70 5.30 -51.93 -0.28 2.42 16
33 H 0.04 0.77 6.08 -51.92 -0.32 0.46 16
34 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16
LS Contribution 278.33 15.07 4.19 4.19
Total: -1.00 -30.73 278.33 -6.46 -37.19
By element:
Atomic # 1 Polarization: 10.36 SS G_CDS: -4.38 Total: 5.97 kcal
Atomic # 6 Polarization: -2.80 SS G_CDS: -1.22 Total: -4.02 kcal
Atomic # 7 Polarization: -42.23 SS G_CDS: -0.10 Total: -42.33 kcal
Atomic # 8 Polarization: -16.57 SS G_CDS: 0.07 Total: -16.50 kcal
Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal
Total LS contribution 4.19 Total: 4.19 kcal
Total: -30.73 -6.46 -37.19 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701223352.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 70.333 kcal
(2) G-P(sol) polarization free energy of solvation -30.732 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.601 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds