Wall clock time and date at job start Mon Mar 30 2020 03:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.47064 * 2 1
4 4 N 1.46497 * 109.46955 * 185.02128 * 3 2 1
5 5 C 1.35596 * 125.67851 * 260.49668 * 4 3 2
6 6 C 1.35491 * 108.87952 * 179.83238 * 5 4 3
7 7 C 1.39806 * 107.87785 * 0.42576 * 6 5 4
8 8 C 1.37670 * 125.68848 * 80.80178 * 4 3 2
9 9 C 1.46552 * 126.23504 * 359.97438 * 8 4 3
10 10 O 1.21741 * 119.99892 * 353.43409 * 9 8 4
11 11 N 1.34772 * 119.99760 * 173.43581 * 9 8 4
12 12 C 1.46498 * 120.00417 * 4.51713 * 11 9 8
13 13 C 1.36878 * 120.00160 * 184.51653 * 11 9 8
14 14 H 1.08000 * 119.99782 * 22.58278 * 13 11 9
15 15 C 1.39002 * 120.00341 * 202.58486 * 13 11 9
16 16 N 1.31402 * 120.00203 * 15.87229 * 15 13 11
17 17 Si 1.86799 * 120.00243 * 195.86989 * 15 13 11
18 18 H 1.48501 * 109.46992 * 60.00321 * 17 15 13
19 19 H 1.48506 * 109.47368 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47435 * 299.99906 * 17 15 13
21 21 H 1.08997 * 109.46992 * 64.98467 * 1 2 3
22 22 H 1.09007 * 109.46991 * 184.98676 * 1 2 3
23 23 H 1.09005 * 109.47152 * 304.97907 * 1 2 3
24 24 H 1.09000 * 109.47290 * 240.00161 * 2 1 3
25 25 H 1.09004 * 109.46973 * 120.00114 * 2 1 3
26 26 H 1.08994 * 109.46717 * 65.02300 * 3 2 1
27 27 H 1.08994 * 109.47208 * 305.02006 * 3 2 1
28 28 H 1.07999 * 125.56290 * 359.96169 * 5 4 3
29 29 H 1.07997 * 126.06169 * 180.16689 * 6 5 4
30 30 H 1.08000 * 126.45663 * 179.73789 * 7 6 5
31 31 H 1.09004 * 109.47295 * 63.95680 * 12 11 9
32 32 H 1.08991 * 109.47462 * 183.96208 * 12 11 9
33 33 H 1.09007 * 109.46750 * 303.95802 * 12 11 9
34 34 H 0.96997 * 120.00385 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5000 1.4443 -0.1209
5 6 4.3780 1.5953 0.9013
6 6 5.6387 1.5397 0.4082
7 6 5.5509 1.3567 -0.9751
8 6 4.2091 1.2987 -1.2919
9 6 3.6421 1.1152 -2.6308
10 8 2.4424 0.9606 -2.7679
11 7 4.4490 1.1176 -3.7103
12 6 5.9014 1.2042 -3.5392
13 6 3.9115 1.0390 -4.9667
14 1 2.8869 1.3361 -5.1352
15 6 4.6843 0.5770 -6.0257
16 7 5.8033 -0.0699 -5.7893
17 14 4.1320 0.8755 -7.7850
18 1 4.0257 2.3365 -8.0293
19 1 5.1232 0.2875 -8.7216
20 1 2.8079 0.2395 -8.0030
21 1 -0.3633 0.4346 -0.9312
22 1 -0.3633 -1.0238 0.0893
23 1 -0.3634 0.5892 0.8421
24 1 1.8934 -0.5138 -0.8900
25 1 1.8933 -0.5139 0.8900
26 1 1.7520 1.9296 0.9315
27 1 1.6051 1.9816 -0.8416
28 1 4.1153 1.7348 1.9395
29 1 6.5500 1.6262 0.9814
30 1 6.3774 1.2759 -1.6655
31 1 6.2587 0.3189 -3.0131
32 1 6.3795 1.2636 -4.5168
33 1 6.1465 2.0946 -2.9602
34 1 6.3424 -0.3927 -6.5282
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701223352.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:07
Heat of formation + Delta-G solvation = 14.549276 kcal
Electronic energy + Delta-G solvation = -17061.292595 eV
Core-core repulsion = 14381.325198 eV
Total energy + Delta-G solvation = -2679.967397 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.21704 -39.73704 -36.92047 -35.87071 -33.80791 -31.99113 -30.35774 -28.21194
-26.91618 -26.50567 -23.05745 -22.68046 -21.50255 -19.96990 -19.11057 -17.91352
-17.26559 -16.35586 -16.21039 -15.94456 -15.75861 -15.23841 -14.84802 -14.53692
-13.86760 -13.75925 -13.55100 -13.39968 -13.26495 -12.97246 -12.85763 -12.69497
-12.51972 -12.18603 -12.12339 -11.81221 -11.69997 -10.91955 -10.44043 -9.73920
-9.48641 -9.00867 -8.35941 -6.00228 0.75480 1.40211 1.43977 1.51896
1.96141 2.01222 2.30360 2.54084 3.13664 3.15677 3.80795 3.95755
4.07121 4.22977 4.32749 4.40637 4.55302 4.66897 4.68371 4.73473
4.80711 4.91061 5.03989 5.21780 5.29889 5.31236 5.34216 5.43583
5.46026 5.95335 6.14114 6.17690 6.48518 6.58675 7.10801 7.39777
8.00480 8.63134
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.028274 B = 0.007913 C = 0.006439
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 990.078058 B = 3537.807527 C = 4347.349460
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.127 4.127
3 C 0.108 3.892
4 N -0.421 5.421
5 C 0.010 3.990
6 C -0.220 4.220
7 C -0.185 4.185
8 C -0.060 4.060
9 C 0.491 3.509
10 O -0.632 6.632
11 N -0.443 5.443
12 C 0.088 3.912
13 C -0.340 4.340
14 H 0.074 0.926
15 C -0.005 4.005
16 N -0.889 5.889
17 Si 0.996 3.004
18 H -0.265 1.265
19 H -0.266 1.266
20 H -0.276 1.276
21 H 0.039 0.961
22 H 0.065 0.935
23 H 0.083 0.917
24 H 0.028 0.972
25 H 0.077 0.923
26 H 0.126 0.874
27 H 0.065 0.935
28 H 0.207 0.793
29 H 0.167 0.833
30 H 0.163 0.837
31 H 0.046 0.954
32 H 0.095 0.905
33 H 0.060 0.940
34 H 0.277 0.723
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.977 2.977 11.999 12.401
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.165 4.165
3 C -0.012 4.012
4 N -0.094 5.094
5 C -0.124 4.124
6 C -0.243 4.243
7 C -0.211 4.211
8 C -0.173 4.173
9 C 0.283 3.717
10 O -0.522 6.522
11 N -0.159 5.159
12 C -0.055 4.055
13 C -0.468 4.468
14 H 0.092 0.908
15 C -0.206 4.206
16 N -0.527 5.527
17 Si 0.819 3.181
18 H -0.190 1.190
19 H -0.190 1.190
20 H -0.202 1.202
21 H 0.058 0.942
22 H 0.084 0.916
23 H 0.102 0.898
24 H 0.047 0.953
25 H 0.095 0.905
26 H 0.144 0.856
27 H 0.083 0.917
28 H 0.224 0.776
29 H 0.184 0.816
30 H 0.180 0.820
31 H 0.064 0.936
32 H 0.113 0.887
33 H 0.078 0.922
34 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -1.761 2.807 11.786 12.243
hybrid contribution -0.146 -0.181 -1.169 1.192
sum -1.906 2.625 10.617 11.102
Atomic orbital electron populations
1.21599 0.93019 1.02763 1.02108 1.21721 0.98032 0.95504 1.01261
1.22050 0.76123 0.99000 1.04057 1.44237 1.07163 1.52502 1.05546
1.22651 0.88743 1.06849 0.94134 1.21172 0.97867 1.11589 0.93721
1.22599 0.94369 1.06087 0.98080 1.20242 0.92433 1.17333 0.87300
1.17562 0.86475 0.83671 0.83997 1.90546 1.16303 1.58306 1.87048
1.43451 1.06739 1.61327 1.04431 1.22337 0.80678 0.98532 1.03916
1.19629 0.99415 1.43644 0.84119 0.90794 1.26172 0.96238 0.94143
1.04094 1.69992 1.15082 1.33549 1.34120 0.84970 0.78055 0.79031
0.76093 1.18996 1.19031 1.20185 0.94218 0.91569 0.89849 0.95264
0.90474 0.85586 0.91653 0.77588 0.81551 0.82023 0.93555 0.88717
0.92166 0.91259
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.50 9.91 71.98 0.71 -2.79 16
2 C -0.13 -4.00 6.06 30.59 0.19 -3.82 16
3 C 0.11 3.43 5.34 86.38 0.46 3.90 16
4 N -0.42 -15.16 2.77 -510.96 -1.41 -16.58 16
5 C 0.01 0.29 11.36 83.48 0.95 1.23 16
6 C -0.22 -6.57 10.81 22.01 0.24 -6.33 16
7 C -0.19 -7.13 8.79 22.59 0.20 -6.93 16
8 C -0.06 -2.68 6.81 40.34 0.27 -2.41 16
9 C 0.49 26.95 7.58 86.41 0.66 27.61 16
10 O -0.63 -37.58 13.59 -4.48 -0.06 -37.64 16
11 N -0.44 -24.81 3.01 -663.60 -2.00 -26.81 16
12 C 0.09 4.21 7.46 127.77 0.95 5.16 16
13 C -0.34 -20.13 9.25 84.09 0.78 -19.36 16
14 H 0.07 4.62 7.47 -2.91 -0.02 4.60 16
15 C 0.00 -0.26 5.01 84.94 0.43 0.16 16
16 N -0.89 -48.03 10.61 21.67 0.23 -47.80 16
17 Si 1.00 42.82 29.58 68.60 2.03 44.85 16
18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16
19 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16
20 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16
21 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16
22 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16
23 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16
24 H 0.03 1.23 7.14 -2.39 -0.02 1.21 16
25 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16
26 H 0.13 2.70 8.11 -2.39 -0.02 2.68 16
27 H 0.06 2.51 7.03 -2.39 -0.02 2.50 16
28 H 0.21 3.54 8.06 -2.91 -0.02 3.52 16
29 H 0.17 3.75 8.06 -2.91 -0.02 3.72 16
30 H 0.16 6.06 4.09 -2.91 -0.01 6.05 16
31 H 0.05 2.17 6.85 -2.39 -0.02 2.15 16
32 H 0.09 4.79 5.30 -2.39 -0.01 4.78 16
33 H 0.06 2.54 6.08 -2.38 -0.01 2.52 16
34 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16
Total: -1.00 -71.73 278.33 5.72 -66.01
By element:
Atomic # 1 Polarization: 20.42 SS G_CDS: 1.10 Total: 21.52 kcal
Atomic # 6 Polarization: -9.39 SS G_CDS: 5.83 Total: -3.56 kcal
Atomic # 7 Polarization: -88.01 SS G_CDS: -3.18 Total: -91.19 kcal
Atomic # 8 Polarization: -37.58 SS G_CDS: -0.06 Total: -37.64 kcal
Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal
Total: -71.73 5.72 -66.01 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701223352.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.563 kcal
(2) G-P(sol) polarization free energy of solvation -71.730 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.833 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.717 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.549 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds