Wall clock time and date at job start Mon Mar 30 2020 03:46:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46499 * 109.47144 * 2 1
4 4 C 1.36876 * 119.99901 * 267.20370 * 3 2 1
5 5 H 1.08006 * 120.00162 * 190.47817 * 4 3 2
6 6 C 1.39012 * 120.00059 * 10.46583 * 4 3 2
7 7 N 1.31392 * 119.99987 * 15.51189 * 6 4 3
8 8 Si 1.86801 * 119.99785 * 195.50566 * 6 4 3
9 9 H 1.48495 * 109.47320 * 0.02562 * 8 6 4
10 10 H 1.48498 * 109.46795 * 120.00710 * 8 6 4
11 11 H 1.48500 * 109.46732 * 240.00143 * 8 6 4
12 12 C 1.34781 * 120.00244 * 87.19518 * 3 2 1
13 13 O 1.21737 * 120.00098 * 174.33112 * 12 3 2
14 14 C 1.46551 * 119.99788 * 354.33459 * 12 3 2
15 15 C 1.37996 * 126.23941 * 352.73006 * 14 12 3
16 16 C 1.39806 * 107.08289 * 180.26435 * 15 14 12
17 17 C 1.35485 * 107.87675 * 359.97438 * 16 15 14
18 18 N 1.35588 * 108.88646 * 0.02562 * 17 16 15
19 19 C 1.46500 * 125.68127 * 180.02562 * 18 17 16
20 20 C 1.53004 * 109.46549 * 265.51778 * 19 18 17
21 21 H 1.09009 * 109.46577 * 189.02906 * 1 2 3
22 22 H 1.08991 * 109.47291 * 309.02967 * 1 2 3
23 23 H 1.09003 * 109.46902 * 69.03221 * 1 2 3
24 24 H 1.09002 * 109.47815 * 239.99839 * 2 1 3
25 25 H 1.09002 * 109.47477 * 119.99790 * 2 1 3
26 26 H 0.96995 * 120.00150 * 180.02562 * 7 6 4
27 27 H 1.08001 * 126.45732 * 0.24390 * 15 14 12
28 28 H 1.07996 * 126.05943 * 179.97438 * 16 15 14
29 29 H 1.08009 * 125.55487 * 180.02562 * 17 16 15
30 30 H 1.08994 * 109.47474 * 25.51973 * 19 18 17
31 31 H 1.08997 * 109.46993 * 145.52298 * 19 18 17
32 32 H 1.09006 * 109.46868 * 65.14983 * 20 19 18
33 33 H 1.09001 * 109.46727 * 185.14383 * 20 19 18
34 34 H 1.08995 * 109.47555 * 305.14751 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3010 2.0071 -1.1840
5 1 2.8170 2.9559 -1.1835
6 6 1.9240 1.4216 -2.3871
7 7 1.0457 0.4444 -2.3954
8 14 2.6662 2.0241 -3.9920
9 1 3.6227 3.1250 -3.7125
10 1 3.3804 0.9053 -4.6578
11 1 1.5855 2.5205 -4.8814
12 6 2.1891 2.0357 1.1658
13 8 2.6914 3.1446 1.1734
14 6 1.7703 1.4122 2.4242
15 6 1.0657 0.2330 2.5556
16 6 0.8773 0.0174 3.9240
17 6 1.4570 1.0446 4.5906
18 7 2.0030 1.8992 3.6907
19 6 2.7218 3.1346 4.0126
20 6 1.7521 4.3169 3.9610
21 1 -0.3633 -1.0150 0.1613
22 1 -0.3633 0.6471 0.7982
23 1 -0.3633 0.3678 -0.9597
24 1 1.8934 -0.5138 -0.8899
25 1 1.8934 -0.5138 0.8900
26 1 0.7829 0.0356 -3.2348
27 1 0.7240 -0.4033 1.7525
28 1 0.3611 -0.8196 4.3705
29 1 1.4803 1.1633 5.6639
30 1 3.1475 3.0571 5.0129
31 1 3.5216 3.2888 3.2883
32 1 1.0043 4.2080 4.7466
33 1 2.3032 5.2455 4.1102
34 1 1.2581 4.3396 2.9897
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701242391.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:38
Heat of formation + Delta-G solvation = 53.323940 kcal
Electronic energy + Delta-G solvation = -17438.663121 eV
Core-core repulsion = 14760.377120 eV
Total energy + Delta-G solvation = -2678.286002 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.75948 -38.00617 -35.32541 -33.55495 -31.86958 -29.97087 -28.67947 -28.20146
-24.96143 -23.06646 -22.24374 -21.03270 -20.11559 -18.34256 -16.95506 -16.34046
-15.44319 -14.60527 -14.43105 -14.07493 -13.87998 -13.53786 -13.30617 -12.86320
-12.60064 -11.90728 -11.76916 -11.75269 -11.50460 -11.28188 -11.10620 -10.88403
-10.72783 -10.47708 -10.30487 -10.06495 -9.81260 -8.90260 -8.41400 -8.09693
-7.68282 -7.45972 -6.28890 -3.80561 2.36864 3.15610 3.23927 3.30009
3.41509 3.42961 4.12426 4.42035 4.94567 5.09597 5.17474 5.43714
5.46851 5.63695 5.79331 5.87918 6.00591 6.12070 6.24382 6.33488
6.50789 6.69783 6.71727 6.77882 6.83493 6.96671 7.38264 7.47145
7.51206 7.72067 7.89207 7.91267 8.11460 8.54011 9.17024 9.42447
10.00451 10.63276
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033360 B = 0.008557 C = 0.007111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.133244 B = 3271.394954 C = 3936.885440
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C 0.104 3.896
3 N -0.420 5.420
4 C -0.293 4.293
5 H 0.105 0.895
6 C 0.025 3.975
7 N -0.867 5.867
8 Si 0.928 3.072
9 H -0.269 1.269
10 H -0.280 1.280
11 H -0.282 1.282
12 C 0.498 3.502
13 O -0.605 6.605
14 C -0.004 4.004
15 C -0.195 4.195
16 C -0.214 4.214
17 C -0.020 4.020
18 N -0.416 5.416
19 C 0.104 3.896
20 C -0.159 4.159
21 H 0.036 0.964
22 H 0.036 0.964
23 H 0.101 0.899
24 H 0.102 0.898
25 H 0.054 0.946
26 H 0.267 0.733
27 H 0.174 0.826
28 H 0.130 0.870
29 H 0.154 0.846
30 H 0.076 0.924
31 H 0.102 0.898
32 H 0.049 0.951
33 H 0.067 0.933
34 H 0.072 0.928
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.303 -1.256 8.775 8.869
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.219 4.219
2 C -0.019 4.019
3 N -0.136 5.136
4 C -0.421 4.421
5 H 0.123 0.877
6 C -0.177 4.177
7 N -0.507 5.507
8 Si 0.755 3.245
9 H -0.193 1.193
10 H -0.206 1.206
11 H -0.208 1.208
12 C 0.288 3.712
13 O -0.494 6.494
14 C -0.118 4.118
15 C -0.220 4.220
16 C -0.239 4.239
17 C -0.154 4.154
18 N -0.091 5.091
19 C -0.017 4.017
20 C -0.216 4.216
21 H 0.055 0.945
22 H 0.055 0.945
23 H 0.119 0.881
24 H 0.120 0.880
25 H 0.072 0.928
26 H 0.077 0.923
27 H 0.191 0.809
28 H 0.148 0.852
29 H 0.172 0.828
30 H 0.094 0.906
31 H 0.121 0.879
32 H 0.068 0.932
33 H 0.086 0.914
34 H 0.091 0.909
Dipole moment (debyes) X Y Z Total
from point charges 0.062 -0.505 8.653 8.668
hybrid contribution 0.106 0.080 -0.604 0.619
sum 0.168 -0.425 8.049 8.062
Atomic orbital electron populations
1.22411 0.96512 0.98899 1.04051 1.22068 0.94798 0.83378 1.01634
1.43478 1.54346 1.11443 1.04286 1.19839 1.34304 1.06199 0.81807
0.87685 1.25311 0.95859 0.96968 0.99607 1.70066 1.28380 1.25364
1.26909 0.85822 0.79002 0.78709 0.80949 1.19289 1.20594 1.20785
1.16712 0.86284 0.85764 0.82431 1.90586 1.50758 1.21096 1.86914
1.20649 1.07959 0.97575 0.85665 1.22723 1.03964 0.97908 0.97425
1.20775 1.08199 1.00705 0.94174 1.21728 1.05098 0.93838 0.94701
1.44008 1.41531 1.18332 1.05197 1.21829 0.95903 0.82372 1.01588
1.22031 0.99382 0.97062 1.03174 0.94546 0.94525 0.88104 0.87974
0.92845 0.92272 0.80892 0.85184 0.82839 0.90584 0.87936 0.93173
0.91443 0.90893
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.48 8.02 37.16 0.30 -3.18 16
2 C 0.10 2.41 4.79 -4.04 -0.02 2.39 16
3 N -0.42 -11.01 2.62 -116.34 -0.31 -11.32 16
4 C -0.29 -8.10 9.49 -15.01 -0.14 -8.25 16
5 H 0.11 3.05 7.24 -52.48 -0.38 2.67 16
6 C 0.02 0.64 5.12 -17.45 -0.09 0.55 16
7 N -0.87 -21.80 7.81 55.50 0.43 -21.36 16
8 Si 0.93 20.31 29.58 -169.99 -5.03 15.28 16
9 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16
10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16
11 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16
12 C 0.50 12.90 7.56 -12.91 -0.10 12.80 16
13 O -0.61 -16.78 13.94 5.16 0.07 -16.71 16
14 C 0.00 -0.09 6.70 -81.98 -0.55 -0.64 16
15 C -0.20 -3.90 7.37 -39.08 -0.29 -4.19 16
16 C -0.21 -3.65 10.81 -39.98 -0.43 -4.08 16
17 C -0.02 -0.33 11.37 -16.87 -0.19 -0.52 16
18 N -0.42 -7.87 2.76 -112.85 -0.31 -8.18 16
19 C 0.10 1.71 6.09 -4.04 -0.02 1.69 16
20 C -0.16 -2.46 10.14 37.16 0.38 -2.09 16
21 H 0.04 0.67 8.06 -51.92 -0.42 0.25 16
22 H 0.04 0.80 6.46 -51.93 -0.34 0.46 16
23 H 0.10 2.44 5.84 -51.93 -0.30 2.13 16
24 H 0.10 2.51 5.90 -51.93 -0.31 2.20 16
25 H 0.05 1.15 4.99 -51.93 -0.26 0.89 16
26 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16
27 H 0.17 3.39 3.06 -52.49 -0.16 3.23 16
28 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16
29 H 0.15 1.90 8.06 -52.48 -0.42 1.48 16
30 H 0.08 0.96 8.12 -51.93 -0.42 0.54 16
31 H 0.10 1.92 6.77 -51.93 -0.35 1.57 16
32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16
33 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16
34 H 0.07 1.40 7.67 -51.93 -0.40 1.01 16
LS Contribution 270.32 15.07 4.07 4.07
Total: -1.00 -29.67 270.32 -6.39 -36.06
By element:
Atomic # 1 Polarization: 11.84 SS G_CDS: -4.16 Total: 7.68 kcal
Atomic # 6 Polarization: -4.37 SS G_CDS: -1.16 Total: -5.53 kcal
Atomic # 7 Polarization: -40.68 SS G_CDS: -0.18 Total: -40.86 kcal
Atomic # 8 Polarization: -16.78 SS G_CDS: 0.07 Total: -16.71 kcal
Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -29.67 -6.39 -36.06 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701242391.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 89.384 kcal
(2) G-P(sol) polarization free energy of solvation -29.673 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) 53.324 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds