Wall clock time and date at job start Mon Mar 30 2020 03:46:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46499 * 109.47144 * 2 1
4 4 C 1.36876 * 119.99901 * 267.20370 * 3 2 1
5 5 H 1.08006 * 120.00162 * 190.47817 * 4 3 2
6 6 C 1.39012 * 120.00059 * 10.46583 * 4 3 2
7 7 N 1.31392 * 119.99987 * 15.51189 * 6 4 3
8 8 Si 1.86801 * 119.99785 * 195.50566 * 6 4 3
9 9 H 1.48495 * 109.47320 * 0.02562 * 8 6 4
10 10 H 1.48498 * 109.46795 * 120.00710 * 8 6 4
11 11 H 1.48500 * 109.46732 * 240.00143 * 8 6 4
12 12 C 1.34781 * 120.00244 * 87.19518 * 3 2 1
13 13 O 1.21737 * 120.00098 * 174.33112 * 12 3 2
14 14 C 1.46551 * 119.99788 * 354.33459 * 12 3 2
15 15 C 1.37996 * 126.23941 * 352.73006 * 14 12 3
16 16 C 1.39806 * 107.08289 * 180.26435 * 15 14 12
17 17 C 1.35485 * 107.87675 * 359.97438 * 16 15 14
18 18 N 1.35588 * 108.88646 * 0.02562 * 17 16 15
19 19 C 1.46500 * 125.68127 * 180.02562 * 18 17 16
20 20 C 1.53004 * 109.46549 * 265.51778 * 19 18 17
21 21 H 1.09009 * 109.46577 * 189.02906 * 1 2 3
22 22 H 1.08991 * 109.47291 * 309.02967 * 1 2 3
23 23 H 1.09003 * 109.46902 * 69.03221 * 1 2 3
24 24 H 1.09002 * 109.47815 * 239.99839 * 2 1 3
25 25 H 1.09002 * 109.47477 * 119.99790 * 2 1 3
26 26 H 0.96995 * 120.00150 * 180.02562 * 7 6 4
27 27 H 1.08001 * 126.45732 * 0.24390 * 15 14 12
28 28 H 1.07996 * 126.05943 * 179.97438 * 16 15 14
29 29 H 1.08009 * 125.55487 * 180.02562 * 17 16 15
30 30 H 1.08994 * 109.47474 * 25.51973 * 19 18 17
31 31 H 1.08997 * 109.46993 * 145.52298 * 19 18 17
32 32 H 1.09006 * 109.46868 * 65.14983 * 20 19 18
33 33 H 1.09001 * 109.46727 * 185.14383 * 20 19 18
34 34 H 1.08995 * 109.47555 * 305.14751 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.3010 2.0071 -1.1840
5 1 2.8170 2.9559 -1.1835
6 6 1.9240 1.4216 -2.3871
7 7 1.0457 0.4444 -2.3954
8 14 2.6662 2.0241 -3.9920
9 1 3.6227 3.1250 -3.7125
10 1 3.3804 0.9053 -4.6578
11 1 1.5855 2.5205 -4.8814
12 6 2.1891 2.0357 1.1658
13 8 2.6914 3.1446 1.1734
14 6 1.7703 1.4122 2.4242
15 6 1.0657 0.2330 2.5556
16 6 0.8773 0.0174 3.9240
17 6 1.4570 1.0446 4.5906
18 7 2.0030 1.8992 3.6907
19 6 2.7218 3.1346 4.0126
20 6 1.7521 4.3169 3.9610
21 1 -0.3633 -1.0150 0.1613
22 1 -0.3633 0.6471 0.7982
23 1 -0.3633 0.3678 -0.9597
24 1 1.8934 -0.5138 -0.8899
25 1 1.8934 -0.5138 0.8900
26 1 0.7829 0.0356 -3.2348
27 1 0.7240 -0.4033 1.7525
28 1 0.3611 -0.8196 4.3705
29 1 1.4803 1.1633 5.6639
30 1 3.1475 3.0571 5.0129
31 1 3.5216 3.2888 3.2883
32 1 1.0043 4.2080 4.7466
33 1 2.3032 5.2455 4.1102
34 1 1.2581 4.3396 2.9897
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701242391.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:38
Heat of formation + Delta-G solvation = 35.904211 kcal
Electronic energy + Delta-G solvation = -17439.418497 eV
Core-core repulsion = 14760.377120 eV
Total energy + Delta-G solvation = -2679.041378 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-42.25565 -39.85037 -37.24020 -35.01832 -33.74341 -31.79931 -30.07593 -29.79059
-26.88215 -24.40841 -24.05273 -22.76290 -21.58332 -19.88301 -18.90580 -17.97711
-17.26131 -16.23418 -16.09920 -15.88389 -15.47976 -15.04477 -14.96882 -14.53368
-14.02445 -13.69797 -13.30217 -13.17956 -13.04434 -12.86819 -12.83139 -12.65854
-12.28236 -12.10290 -12.02540 -11.89152 -11.64137 -10.84181 -10.37380 -9.73945
-9.41783 -8.96288 -8.24880 -5.86489 0.77965 1.41494 1.42540 1.55445
1.99580 2.03318 2.32154 2.56904 3.16265 3.18900 3.88214 4.04153
4.18353 4.30432 4.41351 4.50517 4.60354 4.63223 4.80609 4.91894
4.92176 5.01883 5.12109 5.20791 5.36252 5.39007 5.47507 5.55773
5.95914 6.03165 6.16325 6.21950 6.56514 6.62618 7.17351 7.46862
8.05034 8.65358
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033360 B = 0.008557 C = 0.007111
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 839.133244 B = 3271.394954 C = 3936.885440
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.111 3.889
3 N -0.436 5.436
4 C -0.340 4.340
5 H 0.073 0.927
6 C -0.001 4.001
7 N -0.869 5.869
8 Si 0.992 3.008
9 H -0.280 1.280
10 H -0.265 1.265
11 H -0.273 1.273
12 C 0.485 3.515
13 O -0.642 6.642
14 C -0.058 4.058
15 C -0.190 4.190
16 C -0.222 4.222
17 C 0.008 3.992
18 N -0.421 5.421
19 C 0.100 3.900
20 C -0.150 4.150
21 H 0.069 0.931
22 H 0.029 0.971
23 H 0.075 0.925
24 H 0.085 0.915
25 H 0.071 0.929
26 H 0.274 0.726
27 H 0.172 0.828
28 H 0.165 0.835
29 H 0.206 0.794
30 H 0.126 0.874
31 H 0.067 0.933
32 H 0.074 0.926
33 H 0.088 0.912
34 H 0.023 0.977
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.943 -2.555 10.788 11.127
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.012 4.012
3 N -0.152 5.152
4 C -0.468 4.468
5 H 0.091 0.909
6 C -0.203 4.203
7 N -0.508 5.508
8 Si 0.815 3.185
9 H -0.205 1.205
10 H -0.190 1.190
11 H -0.198 1.198
12 C 0.277 3.723
13 O -0.533 6.533
14 C -0.172 4.172
15 C -0.215 4.215
16 C -0.246 4.246
17 C -0.126 4.126
18 N -0.095 5.095
19 C -0.021 4.021
20 C -0.208 4.208
21 H 0.088 0.912
22 H 0.048 0.952
23 H 0.093 0.907
24 H 0.103 0.897
25 H 0.088 0.912
26 H 0.085 0.915
27 H 0.189 0.811
28 H 0.183 0.817
29 H 0.222 0.778
30 H 0.144 0.856
31 H 0.086 0.914
32 H 0.093 0.907
33 H 0.106 0.894
34 H 0.042 0.958
Dipole moment (debyes) X Y Z Total
from point charges -0.598 -1.835 10.657 10.831
hybrid contribution 0.273 0.460 -1.110 1.232
sum -0.325 -1.376 9.547 9.651
Atomic orbital electron populations
1.22217 0.95349 1.00541 1.02218 1.22089 0.95628 0.81982 1.01469
1.43670 1.54919 1.12454 1.04126 1.19691 1.37004 1.06480 0.83634
0.90859 1.26001 0.95598 0.97012 1.01714 1.70152 1.27566 1.25043
1.28034 0.84910 0.78169 0.78232 0.77143 1.20479 1.19011 1.19799
1.17387 0.85436 0.85624 0.83835 1.90528 1.52266 1.22734 1.87781
1.20249 1.11704 0.99573 0.85629 1.22834 1.02647 0.96749 0.99304
1.21180 1.08653 1.02190 0.92580 1.22608 1.01599 0.91879 0.96508
1.44264 1.41578 1.19190 1.04498 1.21988 0.95111 0.81958 1.03028
1.21958 0.99752 0.97950 1.01131 0.91208 0.95205 0.90679 0.89683
0.91155 0.91511 0.81102 0.81704 0.77756 0.85644 0.91447 0.90695
0.89364 0.95769
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.29 8.02 71.98 0.58 -5.71 16
2 C 0.11 5.21 4.79 86.38 0.41 5.62 16
3 N -0.44 -24.01 2.62 -640.18 -1.68 -25.69 16
4 C -0.34 -19.89 9.49 84.09 0.80 -19.09 16
5 H 0.07 4.62 7.24 -2.91 -0.02 4.60 16
6 C 0.00 -0.06 5.12 84.94 0.43 0.38 16
7 N -0.87 -44.17 7.81 21.68 0.17 -44.00 16
8 Si 0.99 42.49 29.58 68.60 2.03 44.51 16
9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16
10 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16
11 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16
12 C 0.49 26.50 7.56 86.41 0.65 27.15 16
13 O -0.64 -38.19 13.94 -4.47 -0.06 -38.26 16
14 C -0.06 -2.61 6.70 40.34 0.27 -2.34 16
15 C -0.19 -7.31 7.37 22.59 0.17 -7.14 16
16 C -0.22 -6.71 10.81 22.01 0.24 -6.47 16
17 C 0.01 0.23 11.37 83.48 0.95 1.18 16
18 N -0.42 -15.21 2.76 -510.95 -1.41 -16.62 16
19 C 0.10 3.15 6.09 86.38 0.53 3.67 16
20 C -0.15 -4.54 10.14 71.98 0.73 -3.81 16
21 H 0.07 2.49 8.06 -2.38 -0.02 2.47 16
22 H 0.03 1.30 6.46 -2.39 -0.02 1.28 16
23 H 0.07 3.66 5.84 -2.39 -0.01 3.65 16
24 H 0.09 4.26 5.90 -2.39 -0.01 4.24 16
25 H 0.07 3.03 4.99 -2.39 -0.01 3.02 16
26 H 0.27 12.91 8.31 -92.71 -0.77 12.14 16
27 H 0.17 6.48 3.06 -2.91 -0.01 6.48 16
28 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16
29 H 0.21 3.60 8.06 -2.91 -0.02 3.57 16
30 H 0.13 2.68 8.12 -2.39 -0.02 2.66 16
31 H 0.07 2.61 6.77 -2.39 -0.02 2.59 16
32 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16
33 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
34 H 0.02 0.94 7.67 -2.39 -0.02 0.93 16
Total: -1.00 -69.30 270.32 5.91 -63.39
By element:
Atomic # 1 Polarization: 22.11 SS G_CDS: 1.11 Total: 23.22 kcal
Atomic # 6 Polarization: -12.32 SS G_CDS: 5.76 Total: -6.56 kcal
Atomic # 7 Polarization: -83.39 SS G_CDS: -2.92 Total: -86.31 kcal
Atomic # 8 Polarization: -38.19 SS G_CDS: -0.06 Total: -38.26 kcal
Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal
Total: -69.30 5.91 -63.39 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701242391.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.297 kcal
(2) G-P(sol) polarization free energy of solvation -69.302 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.995 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.910 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.392 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.904 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds