Wall clock time and date at job start Mon Mar 30 2020 03:46:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46494 * 109.47299 * 2 1
4 4 C 1.35535 * 125.67666 * 265.91788 * 3 2 1
5 5 C 1.35450 * 108.87265 * 179.97438 * 4 3 2
6 6 C 1.39829 * 107.86595 * 0.02562 * 5 4 3
7 7 C 1.37652 * 125.68199 * 85.89527 * 3 2 1
8 8 C 1.46680 * 126.23025 * 359.75376 * 7 3 2
9 9 O 1.21690 * 119.99908 * 353.07571 * 8 7 3
10 10 N 1.34779 * 119.99939 * 173.06714 * 8 7 3
11 11 C 1.46498 * 119.99804 * 354.32985 * 10 8 7
12 12 C 1.46491 * 119.99828 * 174.32634 * 10 8 7
13 13 C 1.50696 * 109.47444 * 90.00249 * 12 10 8
14 14 H 1.08001 * 120.00063 * 0.02562 * 13 12 10
15 15 C 1.37875 * 120.00344 * 179.97438 * 13 12 10
16 16 N 1.31522 * 120.00334 * 180.02562 * 15 13 12
17 17 Si 1.86798 * 119.99987 * 359.97438 * 15 13 12
18 18 H 1.48502 * 109.46980 * 90.00305 * 17 15 13
19 19 H 1.48497 * 109.47278 * 210.00248 * 17 15 13
20 20 H 1.48498 * 109.47168 * 330.00272 * 17 15 13
21 21 H 1.08999 * 109.46973 * 305.01998 * 1 2 3
22 22 H 1.09002 * 109.47242 * 65.01320 * 1 2 3
23 23 H 1.08997 * 109.47406 * 185.01463 * 1 2 3
24 24 H 1.09003 * 109.46988 * 239.99808 * 2 1 3
25 25 H 1.09000 * 109.46773 * 119.99698 * 2 1 3
26 26 H 1.08004 * 125.56465 * 359.97438 * 4 3 2
27 27 H 1.08006 * 126.06616 * 180.02562 * 5 4 3
28 28 H 1.08005 * 126.46233 * 180.02562 * 6 5 4
29 29 H 1.09002 * 109.47221 * 84.41378 * 11 10 8
30 30 H 1.08997 * 109.46960 * 204.41190 * 11 10 8
31 31 H 1.09003 * 109.47382 * 324.41011 * 11 10 8
32 32 H 1.09006 * 109.47242 * 210.00412 * 12 10 8
33 33 H 1.09007 * 109.47430 * 330.00082 * 12 10 8
34 34 H 0.96994 * 120.00067 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.3558 2.1003 -1.0982
5 6 2.7612 3.3322 -0.7076
6 6 2.6762 3.3898 0.6869
7 6 2.2106 2.1648 1.1152
8 6 1.9599 1.7704 2.5056
9 8 1.4245 0.7050 2.7487
10 7 2.3227 2.5880 3.5138
11 6 3.0776 3.8109 3.2297
12 6 1.9621 2.2536 4.8938
13 6 3.0559 1.4210 5.5112
14 1 3.9323 1.1666 4.9336
15 6 2.9384 0.9847 6.8138
16 7 3.8932 0.2585 7.3528
17 14 1.4236 1.4264 7.8136
18 1 0.3873 0.3786 7.6312
19 1 1.7879 1.5175 9.2503
20 1 0.8913 2.7344 7.3542
21 1 -0.3633 0.5897 0.8416
22 1 -0.3634 0.4341 -0.9315
23 1 -0.3634 -1.0237 0.0898
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.3090 1.7484 -2.1182
27 1 3.0915 4.1288 -1.3580
28 1 2.9271 4.2349 1.3109
29 1 2.3870 4.6093 2.9579
30 1 3.6412 4.1040 4.1154
31 1 3.7662 3.6294 2.4044
32 1 1.8354 3.1711 5.4687
33 1 1.0292 1.6897 4.8992
34 1 3.8107 -0.0481 8.2693
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000701243172.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:40
Heat of formation + Delta-G solvation = 34.332257 kcal
Electronic energy + Delta-G solvation = -16919.099620 eV
Core-core repulsion = 14239.990077 eV
Total energy + Delta-G solvation = -2679.109543 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.19006 -38.40103 -35.25050 -33.77147 -32.53197 -29.88649 -29.14364 -27.67134
-26.21327 -23.37060 -22.99339 -20.79391 -20.22462 -18.58681 -16.94265 -16.73506
-15.54623 -15.22216 -15.04806 -14.37077 -14.23951 -13.71350 -13.53404 -13.13801
-12.70871 -12.37324 -12.31924 -12.20055 -12.05375 -11.79226 -11.66585 -11.12740
-10.98121 -10.70493 -10.45914 -10.15327 -9.53681 -9.10592 -8.57973 -8.52736
-7.99054 -7.65035 -6.07367 -4.06040 1.90174 2.94367 2.99138 3.29777
3.35802 3.37209 3.89685 4.04594 4.40279 4.83011 5.03533 5.16617
5.17647 5.27433 5.39240 5.53008 5.60213 5.71195 5.77939 5.88641
5.94095 6.22160 6.22290 6.26447 6.38673 6.68918 6.89865 7.03563
7.24933 7.35270 7.47511 7.61376 8.24256 8.47950 8.93482 8.99366
9.52479 11.06129
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033391 B = 0.007049 C = 0.006382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.339006 B = 3971.123480 C = 4386.440407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C 0.097 3.903
3 N -0.409 5.409
4 C 0.000 4.000
5 C -0.213 4.213
6 C -0.172 4.172
7 C -0.031 4.031
8 C 0.574 3.426
9 O -0.546 6.546
10 N -0.583 5.583
11 C 0.068 3.932
12 C 0.219 3.781
13 C -0.527 4.527
14 H 0.075 0.925
15 C 0.072 3.928
16 N -0.898 5.898
17 Si 0.876 3.124
18 H -0.274 1.274
19 H -0.285 1.285
20 H -0.265 1.265
21 H 0.069 0.931
22 H 0.052 0.948
23 H 0.072 0.928
24 H 0.083 0.917
25 H 0.106 0.894
26 H 0.161 0.839
27 H 0.137 0.863
28 H 0.162 0.838
29 H 0.050 0.950
30 H 0.075 0.925
31 H 0.079 0.921
32 H 0.033 0.967
33 H 0.036 0.964
34 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.148 5.796 -15.510 17.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C -0.024 4.024
3 N -0.082 5.082
4 C -0.135 4.135
5 C -0.237 4.237
6 C -0.197 4.197
7 C -0.145 4.145
8 C 0.362 3.638
9 O -0.426 6.426
10 N -0.313 5.313
11 C -0.075 4.075
12 C 0.099 3.901
13 C -0.566 4.566
14 H 0.093 0.907
15 C -0.130 4.130
16 N -0.536 5.536
17 Si 0.703 3.297
18 H -0.200 1.200
19 H -0.210 1.210
20 H -0.190 1.190
21 H 0.088 0.912
22 H 0.071 0.929
23 H 0.091 0.909
24 H 0.102 0.898
25 H 0.124 0.876
26 H 0.179 0.821
27 H 0.155 0.845
28 H 0.179 0.821
29 H 0.069 0.931
30 H 0.094 0.906
31 H 0.097 0.903
32 H 0.051 0.949
33 H 0.054 0.946
34 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.513 4.764 -15.141 16.502
hybrid contribution -0.585 0.157 0.531 0.806
sum -5.098 4.921 -14.610 16.238
Atomic orbital electron populations
1.22039 0.94179 1.03075 1.02432 1.21986 0.95959 0.79804 1.04617
1.44073 1.47263 1.11657 1.05226 1.21891 1.06878 0.93301 0.91415
1.20808 1.10238 0.97339 0.95326 1.22225 1.04899 0.97180 0.95400
1.20434 1.12865 0.92947 0.88280 1.16957 0.79730 0.84088 0.83037
1.90753 1.44981 1.22121 1.84745 1.47479 1.53727 1.22359 1.07750
1.22324 0.95835 0.86529 1.02818 1.19701 0.97338 0.96388 0.76719
1.21331 1.05074 1.32321 0.97837 0.90706 1.24858 0.96185 0.94530
0.97463 1.69901 1.33047 1.36090 1.14604 0.86851 0.83695 0.79580
0.79564 1.19951 1.21033 1.19025 0.91171 0.92853 0.90920 0.89834
0.87573 0.82136 0.84535 0.82067 0.93143 0.90626 0.90271 0.94936
0.94602 0.92574
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.05 10.15 37.16 0.38 -1.67 16
2 C 0.10 1.35 6.10 -4.04 -0.02 1.33 16
3 N -0.41 -6.34 2.76 -112.87 -0.31 -6.65 16
4 C 0.00 0.00 11.37 -16.91 -0.19 -0.20 16
5 C -0.21 -2.76 10.81 -39.98 -0.43 -3.19 16
6 C -0.17 -2.58 8.75 -39.12 -0.34 -2.92 16
7 C -0.03 -0.56 6.73 -81.98 -0.55 -1.11 16
8 C 0.57 12.58 7.62 -12.85 -0.10 12.48 16
9 O -0.55 -13.57 14.02 5.20 0.07 -13.50 16
10 N -0.58 -12.63 2.86 -184.51 -0.53 -13.16 16
11 C 0.07 1.12 8.65 59.85 0.52 1.64 16
12 C 0.22 5.46 4.16 -5.20 -0.02 5.43 16
13 C -0.53 -15.40 9.94 -34.44 -0.34 -15.74 16
14 H 0.07 2.41 8.06 -52.49 -0.42 1.99 16
15 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16
16 N -0.90 -27.95 13.96 55.43 0.77 -27.18 16
17 Si 0.88 21.67 27.47 -169.99 -4.67 17.01 16
18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
20 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16
21 H 0.07 1.11 7.72 -51.93 -0.40 0.71 16
22 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16
23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
24 H 0.08 0.87 8.13 -51.93 -0.42 0.45 16
25 H 0.11 1.78 6.74 -51.93 -0.35 1.43 16
26 H 0.16 1.47 8.06 -52.48 -0.42 1.04 16
27 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16
28 H 0.16 2.10 4.39 -52.48 -0.23 1.87 16
29 H 0.05 0.68 7.38 -51.93 -0.38 0.30 16
30 H 0.07 1.24 8.03 -51.93 -0.42 0.83 16
31 H 0.08 1.19 5.27 -51.93 -0.27 0.92 16
32 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16
33 H 0.04 0.94 6.94 -51.92 -0.36 0.58 16
34 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16
LS Contribution 282.03 15.07 4.25 4.25
Total: -1.00 -34.39 282.03 -6.11 -40.49
By element:
Atomic # 1 Polarization: 5.17 SS G_CDS: -4.49 Total: 0.68 kcal
Atomic # 6 Polarization: -0.73 SS G_CDS: -1.21 Total: -1.94 kcal
Atomic # 7 Polarization: -46.93 SS G_CDS: -0.07 Total: -46.99 kcal
Atomic # 8 Polarization: -13.57 SS G_CDS: 0.07 Total: -13.50 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.01 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -34.39 -6.11 -40.49 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701243172.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.825 kcal
(2) G-P(sol) polarization free energy of solvation -34.386 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.439 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.107 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.332 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds