Wall clock time and date at job start Mon Mar 30 2020 03:46:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 N 1.46494 * 109.47299 * 2 1
4 4 C 1.35535 * 125.67666 * 265.91788 * 3 2 1
5 5 C 1.35450 * 108.87265 * 179.97438 * 4 3 2
6 6 C 1.39829 * 107.86595 * 0.02562 * 5 4 3
7 7 C 1.37652 * 125.68199 * 85.89527 * 3 2 1
8 8 C 1.46680 * 126.23025 * 359.75376 * 7 3 2
9 9 O 1.21690 * 119.99908 * 353.07571 * 8 7 3
10 10 N 1.34779 * 119.99939 * 173.06714 * 8 7 3
11 11 C 1.46498 * 119.99804 * 354.32985 * 10 8 7
12 12 C 1.46491 * 119.99828 * 174.32634 * 10 8 7
13 13 C 1.50696 * 109.47444 * 90.00249 * 12 10 8
14 14 H 1.08001 * 120.00063 * 0.02562 * 13 12 10
15 15 C 1.37875 * 120.00344 * 179.97438 * 13 12 10
16 16 N 1.31522 * 120.00334 * 180.02562 * 15 13 12
17 17 Si 1.86798 * 119.99987 * 359.97438 * 15 13 12
18 18 H 1.48502 * 109.46980 * 90.00305 * 17 15 13
19 19 H 1.48497 * 109.47278 * 210.00248 * 17 15 13
20 20 H 1.48498 * 109.47168 * 330.00272 * 17 15 13
21 21 H 1.08999 * 109.46973 * 305.01998 * 1 2 3
22 22 H 1.09002 * 109.47242 * 65.01320 * 1 2 3
23 23 H 1.08997 * 109.47406 * 185.01463 * 1 2 3
24 24 H 1.09003 * 109.46988 * 239.99808 * 2 1 3
25 25 H 1.09000 * 109.46773 * 119.99698 * 2 1 3
26 26 H 1.08004 * 125.56465 * 359.97438 * 4 3 2
27 27 H 1.08006 * 126.06616 * 180.02562 * 5 4 3
28 28 H 1.08005 * 126.46233 * 180.02562 * 6 5 4
29 29 H 1.09002 * 109.47221 * 84.41378 * 11 10 8
30 30 H 1.08997 * 109.46960 * 204.41190 * 11 10 8
31 31 H 1.09003 * 109.47382 * 324.41011 * 11 10 8
32 32 H 1.09006 * 109.47242 * 210.00412 * 12 10 8
33 33 H 1.09007 * 109.47430 * 330.00082 * 12 10 8
34 34 H 0.96994 * 120.00067 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3811 0.0000
4 6 2.3558 2.1003 -1.0982
5 6 2.7612 3.3322 -0.7076
6 6 2.6762 3.3898 0.6869
7 6 2.2106 2.1648 1.1152
8 6 1.9599 1.7704 2.5056
9 8 1.4245 0.7050 2.7487
10 7 2.3227 2.5880 3.5138
11 6 3.0776 3.8109 3.2297
12 6 1.9621 2.2536 4.8938
13 6 3.0559 1.4210 5.5112
14 1 3.9323 1.1666 4.9336
15 6 2.9384 0.9847 6.8138
16 7 3.8932 0.2585 7.3528
17 14 1.4236 1.4264 7.8136
18 1 0.3873 0.3786 7.6312
19 1 1.7879 1.5175 9.2503
20 1 0.8913 2.7344 7.3542
21 1 -0.3633 0.5897 0.8416
22 1 -0.3634 0.4341 -0.9315
23 1 -0.3634 -1.0237 0.0898
24 1 1.8933 -0.5139 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 2.3090 1.7484 -2.1182
27 1 3.0915 4.1288 -1.3580
28 1 2.9271 4.2349 1.3109
29 1 2.3870 4.6093 2.9579
30 1 3.6412 4.1040 4.1154
31 1 3.7662 3.6294 2.4044
32 1 1.8354 3.1711 5.4687
33 1 1.0292 1.6897 4.8992
34 1 3.8107 -0.0481 8.2693
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701243172.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:46:39
Heat of formation + Delta-G solvation = 10.858217 kcal
Electronic energy + Delta-G solvation = -16920.117530 eV
Core-core repulsion = 14239.990077 eV
Total energy + Delta-G solvation = -2680.127453 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-42.36860 -39.99572 -36.87589 -35.12037 -34.55111 -31.51937 -30.23497 -29.27438
-27.72298 -24.91765 -24.40372 -22.22319 -21.47637 -19.91699 -19.16492 -18.07081
-17.19774 -16.76969 -16.44808 -16.02030 -15.50591 -15.15008 -14.79419 -14.67568
-14.37723 -13.84935 -13.78992 -13.60615 -13.33976 -13.13193 -12.96169 -12.86157
-12.52133 -12.14314 -12.04980 -11.91377 -11.76819 -10.85192 -10.77137 -9.65650
-9.46064 -9.04924 -8.35644 -6.41350 0.61706 1.31658 1.35793 1.44835
1.77097 1.94216 2.29772 2.43126 2.55695 2.98297 3.72580 3.82216
4.11534 4.21925 4.34838 4.39087 4.50833 4.53318 4.60864 4.72547
4.78535 4.86234 4.90491 4.95466 5.15668 5.24052 5.35345 5.42491
5.57821 5.94625 6.08244 6.22952 6.44784 6.59415 6.64786 7.18298
7.36407 8.81726
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.033391 B = 0.007049 C = 0.006382
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 838.339006 B = 3971.123480 C = 4386.440407
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.094 3.906
3 N -0.418 5.418
4 C 0.021 3.979
5 C -0.218 4.218
6 C -0.156 4.156
7 C -0.085 4.085
8 C 0.562 3.438
9 O -0.595 6.595
10 N -0.596 5.596
11 C 0.065 3.935
12 C 0.228 3.772
13 C -0.537 4.537
14 H 0.024 0.976
15 C 0.010 3.990
16 N -0.946 5.946
17 Si 0.951 3.049
18 H -0.276 1.276
19 H -0.273 1.273
20 H -0.236 1.236
21 H 0.030 0.970
22 H 0.078 0.922
23 H 0.084 0.916
24 H 0.125 0.875
25 H 0.064 0.936
26 H 0.205 0.795
27 H 0.172 0.828
28 H 0.179 0.821
29 H 0.087 0.913
30 H 0.071 0.929
31 H 0.092 0.908
32 H 0.056 0.944
33 H 0.019 0.981
34 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.145 7.891 -17.766 20.109
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.026 4.026
3 N -0.092 5.092
4 C -0.114 4.114
5 C -0.242 4.242
6 C -0.183 4.183
7 C -0.198 4.198
8 C 0.353 3.647
9 O -0.479 6.479
10 N -0.326 5.326
11 C -0.077 4.077
12 C 0.106 3.894
13 C -0.576 4.576
14 H 0.042 0.958
15 C -0.188 4.188
16 N -0.586 5.586
17 Si 0.773 3.227
18 H -0.202 1.202
19 H -0.198 1.198
20 H -0.159 1.159
21 H 0.049 0.951
22 H 0.097 0.903
23 H 0.103 0.897
24 H 0.143 0.857
25 H 0.083 0.917
26 H 0.222 0.778
27 H 0.189 0.811
28 H 0.195 0.805
29 H 0.105 0.895
30 H 0.090 0.910
31 H 0.110 0.890
32 H 0.074 0.926
33 H 0.037 0.963
34 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -5.488 6.908 -17.418 19.525
hybrid contribution -0.166 -0.522 1.071 1.203
sum -5.654 6.385 -16.347 18.438
Atomic orbital electron populations
1.21965 0.93557 1.03374 1.01934 1.22047 0.96513 0.79546 1.04527
1.44285 1.47492 1.12063 1.05341 1.22731 1.03612 0.92798 0.92299
1.21250 1.09956 0.98446 0.94516 1.22554 1.02543 0.96199 0.96956
1.20061 1.17587 0.95128 0.86993 1.17640 0.78780 0.83358 0.84892
1.90703 1.47213 1.24160 1.85790 1.47569 1.54425 1.24051 1.06510
1.22610 0.96472 0.85393 1.03201 1.19382 0.94827 0.96199 0.78949
1.21532 1.04753 1.33319 0.97958 0.95810 1.25889 0.99924 0.94159
0.98781 1.70058 1.35636 1.37571 1.15368 0.85672 0.78651 0.80470
0.77894 1.20169 1.19752 1.15903 0.95091 0.90275 0.89674 0.85704
0.91749 0.77780 0.81107 0.80457 0.89454 0.91029 0.88973 0.92574
0.96282 0.92188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.79 10.15 71.98 0.73 -3.06 16
2 C 0.09 2.57 6.10 86.38 0.53 3.10 16
3 N -0.42 -12.35 2.76 -511.02 -1.41 -13.76 16
4 C 0.02 0.44 11.37 83.48 0.95 1.39 16
5 C -0.22 -4.71 10.81 22.01 0.24 -4.47 16
6 C -0.16 -4.31 8.75 22.57 0.20 -4.11 16
7 C -0.09 -3.03 6.73 40.35 0.27 -2.76 16
8 C 0.56 25.63 7.62 86.45 0.66 26.29 16
9 O -0.60 -31.59 14.02 -4.32 -0.06 -31.65 16
10 N -0.60 -26.36 2.86 -855.90 -2.44 -28.80 16
11 C 0.06 2.06 8.65 127.77 1.10 3.16 16
12 C 0.23 11.61 4.16 85.63 0.36 11.96 16
13 C -0.54 -32.82 9.94 25.60 0.25 -32.56 16
14 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16
15 C 0.01 0.62 5.47 84.65 0.46 1.09 16
16 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16
17 Si 0.95 45.15 27.47 68.60 1.88 47.04 16
18 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16
19 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16
20 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16
21 H 0.03 1.01 7.72 -2.39 -0.02 0.99 16
22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
23 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16
24 H 0.12 2.28 8.13 -2.39 -0.02 2.26 16
25 H 0.06 2.30 6.74 -2.39 -0.02 2.28 16
26 H 0.21 2.46 8.06 -2.91 -0.02 2.43 16
27 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16
28 H 0.18 4.08 4.39 -2.91 -0.01 4.07 16
29 H 0.09 2.13 7.38 -2.39 -0.02 2.11 16
30 H 0.07 2.31 8.03 -2.39 -0.02 2.29 16
31 H 0.09 2.66 5.27 -2.39 -0.01 2.65 16
32 H 0.06 2.57 7.13 -2.38 -0.02 2.55 16
33 H 0.02 1.03 6.94 -2.38 -0.02 1.01 16
34 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16
Total: -1.00 -81.04 282.03 5.05 -75.98
By element:
Atomic # 1 Polarization: 10.95 SS G_CDS: 1.04 Total: 11.99 kcal
Atomic # 6 Polarization: -5.74 SS G_CDS: 5.75 Total: 0.01 kcal
Atomic # 7 Polarization: -99.82 SS G_CDS: -3.56 Total: -103.37 kcal
Atomic # 8 Polarization: -31.59 SS G_CDS: -0.06 Total: -31.65 kcal
Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal
Total: -81.04 5.05 -75.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701243172.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 86.842 kcal
(2) G-P(sol) polarization free energy of solvation -81.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.806 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.984 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.858 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds