Wall clock time and date at job start Mon Mar 30 2020 03:04:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 N 1.30259 * 125.61904 * 2 1
4 4 C 1.34477 * 108.69998 * 179.77270 * 3 2 1
5 5 C 1.34330 * 107.66844 * 0.39216 * 4 3 2
6 6 C 1.50701 * 126.44283 * 179.87650 * 5 4 3
7 7 N 1.46898 * 109.47276 * 89.71374 * 6 5 4
8 8 C 1.46901 * 110.99988 * 190.00159 * 7 6 5
9 9 C 1.50695 * 109.47131 * 162.35192 * 8 7 6
10 10 H 1.08003 * 119.99806 * 354.61380 * 9 8 7
11 11 C 1.37874 * 120.00223 * 174.61086 * 9 8 7
12 12 N 1.31513 * 119.99693 * 0.02562 * 11 9 8
13 13 Si 1.86793 * 120.00213 * 180.02562 * 11 9 8
14 14 H 1.48508 * 109.47241 * 89.99858 * 13 11 9
15 15 H 1.48504 * 109.47533 * 209.99974 * 13 11 9
16 16 H 1.48502 * 109.47398 * 330.00202 * 13 11 9
17 17 C 1.46896 * 110.99974 * 66.04600 * 7 6 5
18 18 C 1.52998 * 117.49730 * 266.01158 * 17 7 6
19 19 C 1.53002 * 117.49622 * 197.35304 * 17 7 6
20 20 O 1.33968 * 125.61859 * 180.02562 * 2 1 3
21 21 H 1.08997 * 109.47497 * 269.97894 * 1 2 3
22 22 H 1.09005 * 109.46680 * 29.98189 * 1 2 3
23 23 H 1.09003 * 109.46567 * 149.97453 * 1 2 3
24 24 H 1.07998 * 126.16358 * 180.26321 * 4 3 2
25 25 H 1.09005 * 109.46760 * 329.70997 * 6 5 4
26 26 H 1.08999 * 109.46821 * 209.71745 * 6 5 4
27 27 H 1.08998 * 109.47050 * 42.35242 * 8 7 6
28 28 H 1.09000 * 109.46957 * 282.35056 * 8 7 6
29 29 H 0.97004 * 119.99961 * 180.02562 * 12 11 9
30 30 H 1.08993 * 115.55221 * 51.68404 * 17 7 6
31 31 H 1.09000 * 117.50328 * 0.02562 * 18 17 7
32 32 H 1.09005 * 117.49861 * 145.02402 * 18 17 7
33 33 H 1.09000 * 117.49907 * 214.97507 * 19 17 7
34 34 H 1.08998 * 117.49818 * 359.97438 * 19 17 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2657 1.0589 0.0000
4 6 3.5522 0.6675 0.0051
5 6 3.5698 -0.6756 -0.0005
6 6 4.7938 -1.5549 -0.0005
7 7 5.1913 -1.8408 1.3845
8 6 6.5069 -2.4927 1.4307
9 6 7.0740 -2.3816 2.8224
10 1 6.5549 -1.8033 3.5724
11 6 8.2555 -3.0182 3.1383
12 7 8.8878 -3.7220 2.2249
13 14 8.9580 -2.8810 4.8637
14 1 8.4274 -3.9850 5.7034
15 1 10.4390 -2.9724 4.8039
16 1 8.5660 -1.5767 5.4556
17 6 4.1762 -2.6549 2.0661
18 6 3.1137 -1.9190 2.8850
19 6 4.2197 -2.7039 3.5947
20 8 2.2873 -1.0890 -0.0005
21 1 -0.3634 -0.0004 1.0276
22 1 -0.3633 0.8902 -0.5136
23 1 -0.3632 -0.8898 -0.5143
24 1 4.4157 1.3162 0.0103
25 1 5.6082 -1.0439 -0.5142
26 1 4.5697 -2.4895 -0.5146
27 1 7.1790 -2.0051 0.7245
28 1 6.4009 -3.5443 1.1644
29 1 9.7188 -4.1702 2.4472
30 1 3.8700 -3.5602 1.5421
31 1 3.1676 -0.8309 2.9176
32 1 2.1085 -2.3406 2.8999
33 1 3.9418 -3.6414 4.0763
34 1 5.0019 -2.1325 4.0945
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701868986.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:02
Heat of formation + Delta-G solvation = 35.637949 kcal
Electronic energy + Delta-G solvation = -16799.863561 eV
Core-core repulsion = 14120.810638 eV
Total energy + Delta-G solvation = -2679.052924 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-44.21110 -39.33239 -35.65092 -35.55167 -34.70461 -32.89819 -30.38833 -28.20204
-25.57998 -24.20689 -23.23361 -23.11997 -21.96019 -21.16377 -18.75804 -17.71883
-17.67598 -16.78631 -16.47708 -16.19928 -15.52947 -15.24357 -14.85654 -14.36090
-14.00176 -13.80798 -13.74113 -13.34140 -13.19564 -13.07849 -12.68321 -12.60520
-12.44700 -12.18046 -11.87928 -11.52721 -11.31752 -11.10359 -10.83096 -10.53886
-9.61401 -9.16433 -8.16071 -6.23092 0.53496 1.42681 1.43481 1.54228
1.72225 1.80949 2.42724 2.99845 3.15871 3.19755 3.25773 3.80423
4.09845 4.11112 4.19291 4.22092 4.43864 4.49396 4.68650 4.70776
4.73900 4.77352 4.79805 5.06727 5.08090 5.09261 5.15963 5.29212
5.38850 5.50403 5.76057 6.05081 6.29635 6.51662 6.81530 6.90711
7.44680 8.94760
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.042375 B = 0.006149 C = 0.005842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 660.602994 B = 4552.398586 C = 4791.829078
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.053 4.053
2 C 0.181 3.819
3 N -0.513 5.513
4 C -0.041 4.041
5 C -0.028 4.028
6 C 0.140 3.860
7 N -0.512 5.512
8 C 0.210 3.790
9 C -0.507 4.507
10 H 0.069 0.931
11 C 0.004 3.996
12 N -0.936 5.936
13 Si 0.960 3.040
14 H -0.274 1.274
15 H -0.285 1.285
16 H -0.267 1.267
17 C 0.006 3.994
18 C -0.146 4.146
19 C -0.158 4.158
20 O -0.206 6.206
21 H 0.107 0.893
22 H 0.111 0.889
23 H 0.105 0.895
24 H 0.188 0.812
25 H 0.111 0.889
26 H 0.044 0.956
27 H 0.012 0.988
28 H -0.028 1.028
29 H 0.262 0.738
30 H 0.070 0.930
31 H 0.075 0.925
32 H 0.107 0.893
33 H 0.099 0.901
34 H 0.091 0.909
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.321 4.437 -3.077 16.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.110 4.110
2 C -0.026 4.026
3 N -0.244 5.244
4 C -0.179 4.179
5 C -0.081 4.081
6 C 0.013 3.987
7 N -0.236 5.236
8 C 0.085 3.915
9 C -0.545 4.545
10 H 0.087 0.913
11 C -0.193 4.193
12 N -0.577 5.577
13 Si 0.786 3.214
14 H -0.200 1.200
15 H -0.211 1.211
16 H -0.191 1.191
17 C -0.103 4.103
18 C -0.183 4.183
19 C -0.195 4.195
20 O -0.094 6.094
21 H 0.125 0.875
22 H 0.130 0.870
23 H 0.123 0.877
24 H 0.205 0.795
25 H 0.129 0.871
26 H 0.063 0.937
27 H 0.030 0.970
28 H -0.010 1.010
29 H 0.071 0.929
30 H 0.087 0.913
31 H 0.094 0.906
32 H 0.125 0.875
33 H 0.117 0.883
34 H 0.109 0.891
Dipole moment (debyes) X Y Z Total
from point charges -15.366 5.345 -2.867 16.520
hybrid contribution 1.292 -1.573 0.180 2.044
sum -14.074 3.772 -2.687 14.816
Atomic orbital electron populations
1.20507 0.78162 1.06371 1.05997 1.27263 0.97982 0.78200 0.99152
1.70423 1.02332 1.31333 1.20277 1.23153 0.95298 0.93222 1.06254
1.23194 0.83170 0.95285 1.06440 1.20445 0.90475 0.96643 0.91185
1.61916 1.02609 1.46199 1.12926 1.19415 0.84250 0.90719 0.97122
1.21493 1.06239 1.29884 0.96920 0.91317 1.25781 0.97358 0.95098
1.01102 1.70072 1.17895 1.34291 1.35450 0.85515 0.77258 0.78761
0.79910 1.19990 1.21085 1.19092 1.22149 0.97394 0.96643 0.94072
1.22856 0.94023 0.98185 1.03259 1.23037 1.00642 1.02078 0.93719
1.84381 1.16729 1.38232 1.70024 0.87495 0.87005 0.87652 0.79459
0.87090 0.93737 0.97016 1.01036 0.92896 0.91258 0.90613 0.87493
0.88289 0.89106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.76 10.51 71.24 0.75 -0.02 16
2 C 0.18 4.80 8.34 88.34 0.74 5.53 16
3 N -0.51 -16.01 11.29 -303.82 -3.43 -19.44 16
4 C -0.04 -1.32 11.80 83.39 0.98 -0.34 16
5 C -0.03 -0.91 5.70 24.79 0.14 -0.77 16
6 C 0.14 5.03 5.50 85.56 0.47 5.50 16
7 N -0.51 -21.76 4.57 -880.09 -4.02 -25.78 16
8 C 0.21 10.79 4.75 85.56 0.41 11.20 16
9 C -0.51 -27.70 8.03 25.60 0.21 -27.50 16
10 H 0.07 3.71 5.49 -2.91 -0.02 3.69 16
11 C 0.00 0.23 5.46 84.65 0.46 0.70 16
12 N -0.94 -55.23 13.29 21.45 0.28 -54.95 16
13 Si 0.96 43.75 29.54 68.60 2.03 45.78 16
14 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16
15 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16
16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16
17 C 0.01 0.25 4.46 44.92 0.20 0.45 16
18 C -0.15 -4.85 9.33 30.62 0.29 -4.56 16
19 C -0.16 -5.93 9.39 30.62 0.29 -5.65 16
20 O -0.21 -6.35 10.34 -3.76 -0.04 -6.38 16
21 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16
22 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16
23 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16
24 H 0.19 5.51 8.06 -2.91 -0.02 5.49 16
25 H 0.11 3.73 7.85 -2.38 -0.02 3.71 16
26 H 0.04 1.56 8.12 -2.39 -0.02 1.54 16
27 H 0.01 0.64 7.77 -2.39 -0.02 0.62 16
28 H -0.03 -1.59 8.03 -2.39 -0.02 -1.61 16
29 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16
30 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16
31 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16
32 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16
33 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16
34 H 0.09 3.87 5.63 -2.39 -0.01 3.86 16
Total: -1.00 -65.26 289.88 0.84 -64.43
By element:
Atomic # 1 Polarization: 10.72 SS G_CDS: 1.09 Total: 11.81 kcal
Atomic # 6 Polarization: -20.39 SS G_CDS: 4.93 Total: -15.46 kcal
Atomic # 7 Polarization: -93.01 SS G_CDS: -7.17 Total: -100.17 kcal
Atomic # 8 Polarization: -6.35 SS G_CDS: -0.04 Total: -6.38 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Total: -65.26 0.84 -64.43 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701868986.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 100.066 kcal
(2) G-P(sol) polarization free energy of solvation -65.265 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.801 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds