Wall clock time and date at job start Mon Mar 30 2020 03:28:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53009 * 109.46971 * 2 1
4 4 H 1.08998 * 109.46660 * 305.87483 * 3 2 1
5 5 C 1.50695 * 109.46980 * 185.87535 * 3 2 1
6 6 H 1.08001 * 119.99824 * 275.18730 * 5 3 2
7 7 C 1.37873 * 120.00439 * 95.19283 * 5 3 2
8 8 N 1.31512 * 120.00319 * 184.64099 * 7 5 3
9 9 Si 1.86801 * 119.99670 * 4.63986 * 7 5 3
10 10 H 1.48504 * 109.47102 * 84.86822 * 9 7 5
11 11 H 1.48504 * 109.47031 * 204.86379 * 9 7 5
12 12 H 1.48495 * 109.47169 * 324.86611 * 9 7 5
13 13 C 1.50698 * 109.46822 * 65.87291 * 3 2 1
14 14 O 1.21338 * 119.99919 * 95.00325 * 13 3 2
15 15 C 1.46550 * 119.99919 * 274.99561 * 13 3 2
16 16 N 1.31890 * 125.88970 * 0.03357 * 15 13 3
17 17 C 1.32867 * 109.08021 * 179.97438 * 16 15 13
18 18 C 1.35837 * 108.39530 * 0.02562 * 17 16 15
19 19 C 1.50703 * 126.39873 * 179.97438 * 18 17 16
20 20 N 1.35226 * 107.20054 * 359.72921 * 18 17 16
21 21 C 1.46491 * 126.45234 * 180.28551 * 20 18 17
22 22 H 1.09002 * 109.46786 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47105 * 299.99913 * 1 2 3
24 24 H 1.09002 * 109.47204 * 60.00422 * 1 2 3
25 25 H 1.08993 * 109.47309 * 119.99833 * 2 1 3
26 26 H 1.08997 * 109.47191 * 240.00556 * 2 1 3
27 27 H 0.97006 * 120.00057 * 180.02562 * 8 7 5
28 28 H 1.07998 * 125.80294 * 179.97438 * 17 16 15
29 29 H 1.08997 * 109.47256 * 90.01776 * 19 18 17
30 30 H 1.09000 * 109.46685 * 210.01850 * 19 18 17
31 31 H 1.08997 * 109.47335 * 330.01831 * 19 18 17
32 32 H 1.09005 * 109.47250 * 270.16386 * 21 20 18
33 33 H 1.08996 * 109.47263 * 30.15996 * 21 20 18
34 34 H 1.08995 * 109.47567 * 150.16904 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5933 1.9858 -0.8327
5 6 3.5399 1.4451 -0.1454
6 1 4.1671 1.3297 0.7262
7 6 4.1116 1.5948 -1.3911
8 7 5.4162 1.5058 -1.5310
9 14 3.0329 1.9241 -2.8802
10 1 2.7624 3.3807 -2.9832
11 1 3.7293 1.4620 -4.1078
12 1 1.7496 1.1915 -2.7336
13 6 1.6598 2.1097 1.2967
14 8 2.4481 2.1371 2.2187
15 6 0.3381 2.7255 1.4440
16 7 -0.6045 2.7628 0.5223
17 6 -1.6635 3.4001 1.0097
18 6 -1.3856 3.7815 2.2835
19 6 -2.3039 4.5329 3.2125
20 7 -0.1330 3.3561 2.5639
21 6 0.5855 3.5382 3.8275
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 1.8933 -0.5137 -0.8900
27 1 5.8184 1.6115 -2.4074
28 1 -2.5879 3.5844 0.4825
29 1 -2.9011 3.8235 3.7854
30 1 -1.7112 5.1429 3.8942
31 1 -2.9636 5.1759 2.6299
32 1 1.1411 4.4756 3.7977
33 1 -0.1282 3.5650 4.6508
34 1 1.2785 2.7098 3.9741
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000713442847.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:00
Heat of formation + Delta-G solvation = 15.841387 kcal
Electronic energy + Delta-G solvation = -17118.316939 eV
Core-core repulsion = 14438.405572 eV
Total energy + Delta-G solvation = -2679.911367 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.04616 -38.39409 -34.73802 -33.72450 -32.07993 -31.71874 -28.22664 -27.09919
-26.98201 -23.68180 -22.36580 -21.15207 -19.80099 -18.38304 -17.18613 -16.26524
-15.99101 -15.16840 -14.71445 -14.09078 -13.84120 -13.51384 -13.31035 -13.22465
-12.73101 -12.64960 -12.41312 -12.40067 -12.34194 -11.89857 -11.74227 -10.86387
-10.76290 -10.20583 -9.98754 -9.78025 -9.72162 -9.47924 -9.06808 -8.81023
-8.50335 -8.08693 -6.06414 -4.07604 1.56105 2.76832 2.79877 3.34539
3.41925 3.47661 3.79927 4.44665 4.53541 4.66745 4.78310 5.01366
5.21008 5.22857 5.33896 5.37353 5.54139 5.64817 5.75898 5.99623
6.08246 6.17731 6.31252 6.53407 6.64939 6.76479 6.85401 6.95794
7.14536 7.16227 7.32404 7.63083 8.03469 8.40417 8.55314 9.05704
9.54032 11.05856
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031113 B = 0.008217 C = 0.007664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 899.725592 B = 3406.862517 C = 3652.461997
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.104 4.104
3 C -0.003 4.003
4 H 0.066 0.934
5 C -0.511 4.511
6 H 0.086 0.914
7 C 0.076 3.924
8 N -0.894 5.894
9 Si 0.867 3.133
10 H -0.274 1.274
11 H -0.287 1.287
12 H -0.256 1.256
13 C 0.452 3.548
14 O -0.457 6.457
15 C 0.122 3.878
16 N -0.423 5.423
17 C -0.032 4.032
18 C -0.021 4.021
19 C -0.075 4.075
20 N -0.422 5.422
21 C 0.065 3.935
22 H 0.035 0.965
23 H 0.046 0.954
24 H 0.058 0.942
25 H 0.051 0.949
26 H 0.066 0.934
27 H 0.265 0.735
28 H 0.172 0.828
29 H 0.072 0.928
30 H 0.063 0.937
31 H 0.083 0.917
32 H 0.079 0.921
33 H 0.081 0.919
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.330 4.384 8.186 17.923
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.142 4.142
3 C -0.023 4.023
4 H 0.084 0.916
5 C -0.548 4.548
6 H 0.104 0.896
7 C -0.126 4.126
8 N -0.531 5.531
9 Si 0.694 3.306
10 H -0.200 1.200
11 H -0.214 1.214
12 H -0.180 1.180
13 C 0.327 3.673
14 O -0.328 6.328
15 C -0.134 4.134
16 N -0.144 5.144
17 C -0.187 4.187
18 C -0.141 4.141
19 C -0.133 4.133
20 N -0.103 5.103
21 C -0.077 4.077
22 H 0.054 0.946
23 H 0.065 0.935
24 H 0.077 0.923
25 H 0.070 0.930
26 H 0.085 0.915
27 H 0.075 0.925
28 H 0.189 0.811
29 H 0.091 0.909
30 H 0.082 0.918
31 H 0.102 0.898
32 H 0.098 0.902
33 H 0.100 0.900
34 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges -14.479 4.054 7.931 16.999
hybrid contribution -0.679 0.724 -0.062 0.995
sum -15.158 4.778 7.869 17.734
Atomic orbital electron populations
1.21972 0.97253 0.99378 1.02159 1.21647 0.93423 0.97290 1.01852
1.19453 0.98526 0.93364 0.90984 0.91614 1.20854 0.87818 1.50516
0.95656 0.89636 1.25002 0.94861 0.94236 0.98538 1.69893 1.09834
1.49321 1.24051 0.86978 0.81593 0.79545 0.82485 1.19989 1.21351
1.18011 1.22403 0.79666 0.74245 0.91004 1.90405 1.50062 1.50490
1.41871 1.24427 0.99893 1.05508 0.83557 1.70356 0.99798 1.15917
1.28312 1.22243 0.99492 1.04364 0.92603 1.21459 0.87597 1.06185
0.98849 1.20227 0.96981 0.98728 0.97404 1.45262 1.12154 1.39897
1.13036 1.22274 0.97638 1.05250 0.82521 0.94612 0.93506 0.92302
0.92997 0.91498 0.92497 0.81099 0.90923 0.91767 0.89847 0.90202
0.90038 0.87550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.85 8.66 37.16 0.32 -2.53 16
2 C -0.10 -2.28 5.37 -26.73 -0.14 -2.43 16
3 C 0.00 -0.08 1.57 -92.92 -0.15 -0.22 16
4 H 0.07 1.65 5.18 -51.93 -0.27 1.38 16
5 C -0.51 -14.76 8.55 -34.44 -0.29 -15.06 16
6 H 0.09 2.74 7.51 -52.49 -0.39 2.34 16
7 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16
8 N -0.89 -27.54 13.96 55.43 0.77 -26.77 16
9 Si 0.87 21.70 26.98 -169.99 -4.59 17.11 16
10 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16
11 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16
12 H -0.26 -6.09 6.82 56.52 0.39 -5.70 16
13 C 0.45 10.37 5.91 -30.96 -0.18 10.19 16
14 O -0.46 -11.03 14.27 5.51 0.08 -10.95 16
15 C 0.12 2.42 6.37 -154.46 -0.98 1.43 16
16 N -0.42 -8.09 8.96 -11.39 -0.10 -8.19 16
17 C -0.03 -0.49 11.77 -17.96 -0.21 -0.70 16
18 C -0.02 -0.28 6.93 -81.96 -0.57 -0.85 16
19 C -0.08 -0.64 9.95 36.01 0.36 -0.28 16
20 N -0.42 -6.78 3.16 -117.49 -0.37 -7.15 16
21 C 0.07 0.83 10.28 59.84 0.62 1.45 16
22 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16
23 H 0.05 0.89 5.51 -51.93 -0.29 0.60 16
24 H 0.06 1.13 8.05 -51.93 -0.42 0.72 16
25 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16
26 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16
27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16
28 H 0.17 2.00 8.06 -52.49 -0.42 1.58 16
29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16
30 H 0.06 0.48 7.82 -51.93 -0.41 0.08 16
31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16
32 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16
33 H 0.08 0.74 7.76 -51.93 -0.40 0.33 16
34 H 0.11 1.54 6.35 -51.93 -0.33 1.21 16
LS Contribution 282.57 15.07 4.26 4.26
Total: -1.00 -33.24 282.57 -5.90 -39.13
By element:
Atomic # 1 Polarization: 4.06 SS G_CDS: -4.62 Total: -0.56 kcal
Atomic # 6 Polarization: -5.55 SS G_CDS: -1.33 Total: -6.88 kcal
Atomic # 7 Polarization: -42.42 SS G_CDS: 0.30 Total: -42.12 kcal
Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -4.59 Total: 17.11 kcal
Total LS contribution 4.26 Total: 4.26 kcal
Total: -33.24 -5.90 -39.13 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713442847.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.975 kcal
(2) G-P(sol) polarization free energy of solvation -33.236 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.739 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.898 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) 15.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds