Wall clock time and date at job start Mon Mar 30 2020 03:28:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53009 * 109.46971 * 2 1
4 4 H 1.08998 * 109.46660 * 305.87483 * 3 2 1
5 5 C 1.50695 * 109.46980 * 185.87535 * 3 2 1
6 6 H 1.08001 * 119.99824 * 275.18730 * 5 3 2
7 7 C 1.37873 * 120.00439 * 95.19283 * 5 3 2
8 8 N 1.31512 * 120.00319 * 184.64099 * 7 5 3
9 9 Si 1.86801 * 119.99670 * 4.63986 * 7 5 3
10 10 H 1.48504 * 109.47102 * 84.86822 * 9 7 5
11 11 H 1.48504 * 109.47031 * 204.86379 * 9 7 5
12 12 H 1.48495 * 109.47169 * 324.86611 * 9 7 5
13 13 C 1.50698 * 109.46822 * 65.87291 * 3 2 1
14 14 O 1.21338 * 119.99919 * 95.00325 * 13 3 2
15 15 C 1.46550 * 119.99919 * 274.99561 * 13 3 2
16 16 N 1.31890 * 125.88970 * 0.03357 * 15 13 3
17 17 C 1.32867 * 109.08021 * 179.97438 * 16 15 13
18 18 C 1.35837 * 108.39530 * 0.02562 * 17 16 15
19 19 C 1.50703 * 126.39873 * 179.97438 * 18 17 16
20 20 N 1.35226 * 107.20054 * 359.72921 * 18 17 16
21 21 C 1.46491 * 126.45234 * 180.28551 * 20 18 17
22 22 H 1.09002 * 109.46786 * 179.97438 * 1 2 3
23 23 H 1.09003 * 109.47105 * 299.99913 * 1 2 3
24 24 H 1.09002 * 109.47204 * 60.00422 * 1 2 3
25 25 H 1.08993 * 109.47309 * 119.99833 * 2 1 3
26 26 H 1.08997 * 109.47191 * 240.00556 * 2 1 3
27 27 H 0.97006 * 120.00057 * 180.02562 * 8 7 5
28 28 H 1.07998 * 125.80294 * 179.97438 * 17 16 15
29 29 H 1.08997 * 109.47256 * 90.01776 * 19 18 17
30 30 H 1.09000 * 109.46685 * 210.01850 * 19 18 17
31 31 H 1.08997 * 109.47335 * 330.01831 * 19 18 17
32 32 H 1.09005 * 109.47250 * 270.16386 * 21 20 18
33 33 H 1.08996 * 109.47263 * 30.15996 * 21 20 18
34 34 H 1.08995 * 109.47567 * 150.16904 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 1 1.5933 1.9858 -0.8327
5 6 3.5399 1.4451 -0.1454
6 1 4.1671 1.3297 0.7262
7 6 4.1116 1.5948 -1.3911
8 7 5.4162 1.5058 -1.5310
9 14 3.0329 1.9241 -2.8802
10 1 2.7624 3.3807 -2.9832
11 1 3.7293 1.4620 -4.1078
12 1 1.7496 1.1915 -2.7336
13 6 1.6598 2.1097 1.2967
14 8 2.4481 2.1371 2.2187
15 6 0.3381 2.7255 1.4440
16 7 -0.6045 2.7628 0.5223
17 6 -1.6635 3.4001 1.0097
18 6 -1.3856 3.7815 2.2835
19 6 -2.3039 4.5329 3.2125
20 7 -0.1330 3.3561 2.5639
21 6 0.5855 3.5382 3.8275
22 1 -0.3633 -1.0277 -0.0005
23 1 -0.3633 0.5138 0.8900
24 1 -0.3634 0.5138 -0.8900
25 1 1.8933 -0.5138 0.8899
26 1 1.8933 -0.5137 -0.8900
27 1 5.8184 1.6115 -2.4074
28 1 -2.5879 3.5844 0.4825
29 1 -2.9011 3.8235 3.7854
30 1 -1.7112 5.1429 3.8942
31 1 -2.9636 5.1759 2.6299
32 1 1.1411 4.4756 3.7977
33 1 -0.1282 3.5650 4.6508
34 1 1.2785 2.7098 3.9741
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713442847.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:00
Heat of formation + Delta-G solvation = -6.024397 kcal
Electronic energy + Delta-G solvation = -17119.265111 eV
Core-core repulsion = 14438.405572 eV
Total energy + Delta-G solvation = -2680.859539 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-43.29657 -40.13921 -36.45988 -35.12434 -34.09935 -32.79390 -30.06099 -28.42445
-28.04754 -25.44057 -23.96609 -22.62581 -21.03010 -20.04018 -19.21242 -17.76050
-17.30787 -16.90882 -16.33225 -15.65542 -15.42505 -14.92123 -14.73688 -14.24013
-14.16161 -14.04406 -13.77031 -13.64422 -13.58856 -13.42000 -13.12132 -12.83392
-12.52224 -11.99520 -11.78918 -11.70933 -11.23393 -11.05391 -10.77453 -10.73454
-10.47349 -9.27079 -8.32762 -6.39521 0.12488 1.34904 1.36177 1.48029
1.50300 1.63388 2.32817 2.33563 2.96805 3.12088 3.67211 3.83470
4.07361 4.23155 4.25294 4.37717 4.40997 4.48486 4.54347 4.65452
4.80145 4.82642 4.86546 5.09880 5.14338 5.24831 5.32690 5.40868
5.48689 5.62075 5.73932 5.94888 6.20672 6.54918 6.69454 7.00837
7.25560 8.83839
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.031113 B = 0.008217 C = 0.007664
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 899.725592 B = 3406.862517 C = 3652.461997
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.101 4.101
3 C -0.006 4.006
4 H 0.066 0.934
5 C -0.519 4.519
6 H 0.034 0.966
7 C 0.020 3.980
8 N -0.943 5.943
9 Si 0.934 3.066
10 H -0.269 1.269
11 H -0.279 1.279
12 H -0.234 1.234
13 C 0.449 3.551
14 O -0.490 6.490
15 C 0.070 3.930
16 N -0.439 5.439
17 C -0.049 4.049
18 C 0.011 3.989
19 C -0.075 4.075
20 N -0.421 5.421
21 C 0.060 3.940
22 H 0.062 0.938
23 H 0.045 0.955
24 H 0.058 0.942
25 H 0.043 0.957
26 H 0.061 0.939
27 H 0.269 0.731
28 H 0.206 0.794
29 H 0.095 0.905
30 H 0.079 0.921
31 H 0.107 0.893
32 H 0.086 0.914
33 H 0.127 0.873
34 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.486 5.583 8.413 21.947
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.140 4.140
3 C -0.026 4.026
4 H 0.084 0.916
5 C -0.557 4.557
6 H 0.052 0.948
7 C -0.178 4.178
8 N -0.582 5.582
9 Si 0.757 3.243
10 H -0.195 1.195
11 H -0.204 1.204
12 H -0.157 1.157
13 C 0.327 3.673
14 O -0.364 6.364
15 C -0.182 4.182
16 N -0.161 5.161
17 C -0.204 4.204
18 C -0.111 4.111
19 C -0.133 4.133
20 N -0.102 5.102
21 C -0.081 4.081
22 H 0.081 0.919
23 H 0.064 0.936
24 H 0.077 0.923
25 H 0.062 0.938
26 H 0.079 0.921
27 H 0.078 0.922
28 H 0.223 0.777
29 H 0.113 0.887
30 H 0.097 0.903
31 H 0.126 0.874
32 H 0.105 0.895
33 H 0.145 0.855
34 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -18.628 5.235 8.172 21.004
hybrid contribution 0.532 0.422 0.020 0.679
sum -18.096 5.657 8.193 20.654
Atomic orbital electron populations
1.21812 0.94219 1.01104 1.02091 1.21538 0.96003 0.95237 1.01175
1.19392 0.95447 0.95318 0.92475 0.91649 1.20975 0.90169 1.50396
0.94164 0.94760 1.25886 0.96207 0.93890 1.01861 1.70039 1.11960
1.51020 1.25138 0.85916 0.80427 0.79747 0.78234 1.19457 1.20422
1.15737 1.22055 0.81334 0.74028 0.89875 1.90383 1.51592 1.52019
1.42407 1.23339 0.99134 1.09771 0.85992 1.70245 1.00674 1.16282
1.28888 1.22958 0.99728 1.04119 0.93642 1.22392 0.86422 1.03186
0.99058 1.20503 0.96498 0.99136 0.97136 1.45431 1.13028 1.38863
1.12844 1.22466 0.98563 1.04477 0.82611 0.91895 0.93600 0.92281
0.93840 0.92075 0.92177 0.77732 0.88677 0.90261 0.87422 0.89532
0.85498 0.90068
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.91 8.66 71.98 0.62 -4.29 16
2 C -0.10 -4.50 5.37 30.60 0.16 -4.34 16
3 C -0.01 -0.32 1.57 -12.29 -0.02 -0.34 16
4 H 0.07 3.29 5.18 -2.39 -0.01 3.28 16
5 C -0.52 -31.69 8.55 25.60 0.22 -31.47 16
6 H 0.03 2.38 7.51 -2.91 -0.02 2.35 16
7 C 0.02 1.18 5.47 84.65 0.46 1.64 16
8 N -0.94 -60.61 13.96 21.45 0.30 -60.31 16
9 Si 0.93 45.36 26.98 68.60 1.85 47.21 16
10 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16
11 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16
12 H -0.23 -10.47 6.82 99.48 0.68 -9.80 16
13 C 0.45 21.34 5.91 27.85 0.16 21.50 16
14 O -0.49 -25.10 14.27 -3.21 -0.05 -25.14 16
15 C 0.07 2.73 6.37 135.87 0.87 3.59 16
16 N -0.44 -15.96 8.96 -189.94 -1.70 -17.66 16
17 C -0.05 -1.31 11.77 83.98 0.99 -0.33 16
18 C 0.01 0.26 6.93 41.48 0.29 0.55 16
19 C -0.08 -0.83 9.95 71.24 0.71 -0.12 16
20 N -0.42 -12.62 3.16 -525.61 -1.66 -14.28 16
21 C 0.06 1.42 10.28 127.77 1.31 2.73 16
22 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
23 H 0.04 1.68 5.51 -2.39 -0.01 1.67 16
24 H 0.06 2.14 8.05 -2.39 -0.02 2.12 16
25 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
26 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16
27 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16
28 H 0.21 3.81 8.06 -2.91 -0.02 3.78 16
29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16
30 H 0.08 0.72 7.82 -2.39 -0.02 0.70 16
31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16
32 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16
33 H 0.13 1.80 7.76 -2.39 -0.02 1.78 16
34 H 0.08 2.39 6.35 -2.39 -0.02 2.37 16
Total: -1.00 -77.56 282.57 5.58 -71.97
By element:
Atomic # 1 Polarization: 8.00 SS G_CDS: 1.06 Total: 9.07 kcal
Atomic # 6 Polarization: -16.63 SS G_CDS: 5.78 Total: -10.85 kcal
Atomic # 7 Polarization: -89.20 SS G_CDS: -3.06 Total: -92.26 kcal
Atomic # 8 Polarization: -25.10 SS G_CDS: -0.05 Total: -25.14 kcal
Atomic # 14 Polarization: 45.36 SS G_CDS: 1.85 Total: 47.21 kcal
Total: -77.56 5.58 -71.97 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713442847.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 65.950 kcal
(2) G-P(sol) polarization free energy of solvation -77.558 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.608 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.584 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.974 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.024 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds