Wall clock time and date at job start Mon Mar 30 2020 03:28:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47355 * 2 1
4 4 H 1.09001 * 109.46973 * 305.57262 * 3 2 1
5 5 C 1.50702 * 109.47144 * 65.56698 * 3 2 1
6 6 H 1.07998 * 119.99649 * 27.39642 * 5 3 2
7 7 C 1.37879 * 120.00054 * 207.38690 * 5 3 2
8 8 N 1.31515 * 119.99730 * 353.30737 * 7 5 3
9 9 Si 1.86803 * 119.99986 * 173.58263 * 7 5 3
10 10 H 1.48493 * 109.47235 * 179.72784 * 9 7 5
11 11 H 1.48505 * 109.46683 * 299.72424 * 9 7 5
12 12 H 1.48497 * 109.47336 * 59.72269 * 9 7 5
13 13 C 1.50698 * 109.47193 * 185.57284 * 3 2 1
14 14 O 1.21337 * 119.99869 * 269.99485 * 13 3 2
15 15 C 1.46549 * 119.99955 * 90.00046 * 13 3 2
16 16 N 1.31887 * 125.89035 * 0.02562 * 15 13 3
17 17 C 1.32875 * 109.08146 * 179.97438 * 16 15 13
18 18 C 1.35827 * 108.39469 * 0.02562 * 17 16 15
19 19 C 1.50699 * 126.39963 * 179.97438 * 18 17 16
20 20 N 1.35234 * 107.20201 * 359.76969 * 18 17 16
21 21 C 1.46496 * 126.45061 * 180.21692 * 20 18 17
22 22 H 1.09001 * 109.47192 * 174.50931 * 1 2 3
23 23 H 1.09003 * 109.47054 * 294.50282 * 1 2 3
24 24 H 1.08992 * 109.47173 * 54.50486 * 1 2 3
25 25 H 1.08998 * 109.47351 * 239.99391 * 2 1 3
26 26 H 1.09012 * 109.47013 * 119.99731 * 2 1 3
27 27 H 0.96993 * 119.99890 * 354.72400 * 8 7 5
28 28 H 1.07997 * 125.79919 * 180.02562 * 17 16 15
29 29 H 1.08998 * 109.47082 * 90.02733 * 19 18 17
30 30 H 1.09003 * 109.47443 * 210.02508 * 19 18 17
31 31 H 1.08995 * 109.47146 * 330.02944 * 19 18 17
32 32 H 1.08998 * 109.47343 * 270.16494 * 21 20 18
33 33 H 1.08998 * 109.47267 * 30.16983 * 21 20 18
34 34 H 1.09008 * 109.46814 * 150.17028 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5975 1.9843 -0.8359
5 6 1.6534 2.1120 1.2936
6 1 1.5154 1.5213 2.1871
7 6 1.4762 3.4787 1.3364
8 7 1.7710 4.2132 0.2861
9 14 0.8244 4.2878 2.8889
10 1 0.7321 5.7552 2.6809
11 1 -0.5227 3.7464 3.2010
12 1 1.7456 4.0049 4.0187
13 6 3.5407 1.4447 -0.1380
14 8 4.2410 1.4116 0.8523
15 6 4.1541 1.4868 -1.4682
16 7 3.5074 1.5255 -2.6170
17 6 4.3889 1.5568 -3.6108
18 6 5.6377 1.5368 -3.0770
19 6 6.9369 1.5591 -3.8402
20 7 5.4973 1.4977 -1.7325
21 6 6.5789 1.4694 -0.7449
22 1 -0.3634 -1.0230 -0.0983
23 1 -0.3633 0.4262 0.9351
24 1 -0.3633 0.5966 -0.8366
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 2.1844 3.8049 -0.4906
28 1 4.1524 1.5921 -4.6640
29 1 7.2525 2.5915 -3.9901
30 1 7.7000 1.0245 -3.2743
31 1 6.7981 1.0774 -4.8080
32 1 6.8496 0.4353 -0.5319
33 1 7.4462 1.9978 -1.1407
34 1 6.2457 1.9541 0.1728
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000713442848.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:02
Heat of formation + Delta-G solvation = 4.814253 kcal
Electronic energy + Delta-G solvation = -17041.489493 eV
Core-core repulsion = 14361.099953 eV
Total energy + Delta-G solvation = -2680.389539 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.84727 -38.17183 -34.64954 -33.74671 -31.85536 -31.68837 -27.93543 -26.88114
-26.26998 -23.86189 -22.36074 -20.81610 -19.83466 -18.75538 -16.64804 -16.42375
-15.74989 -15.01636 -14.26766 -14.01520 -13.67520 -13.37273 -13.34664 -13.18223
-13.08644 -12.53062 -12.38538 -12.26647 -12.00293 -11.79503 -11.02900 -10.88820
-10.74237 -10.19386 -10.04891 -9.72582 -9.51204 -9.39483 -8.92829 -8.55258
-8.26728 -7.95209 -6.37273 -4.09256 1.74021 2.92977 2.95696 3.46299
3.48676 3.66813 3.99369 4.53165 4.73857 4.79992 4.89939 5.11905
5.28843 5.33674 5.45811 5.54747 5.64994 5.74791 5.88972 6.05701
6.07341 6.22563 6.52996 6.67509 6.79287 6.85536 6.97674 7.03221
7.19600 7.31953 7.37367 8.04312 8.25636 8.43868 8.68103 8.83811
9.61152 11.00416
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.027676 B = 0.008088 C = 0.007336
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.472720 B = 3460.878095 C = 3816.124826
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.093 4.093
3 C 0.008 3.992
4 H 0.071 0.929
5 C -0.573 4.573
6 H 0.056 0.944
7 C 0.021 3.979
8 N -0.904 5.904
9 Si 1.068 2.932
10 H -0.283 1.283
11 H -0.285 1.285
12 H -0.288 1.288
13 C 0.438 3.562
14 O -0.464 6.464
15 C 0.125 3.875
16 N -0.428 5.428
17 C -0.033 4.033
18 C -0.026 4.026
19 C -0.074 4.074
20 N -0.425 5.425
21 C 0.067 3.933
22 H 0.033 0.967
23 H 0.063 0.937
24 H 0.048 0.952
25 H 0.038 0.962
26 H 0.048 0.952
27 H 0.271 0.729
28 H 0.171 0.829
29 H 0.072 0.928
30 H 0.062 0.938
31 H 0.082 0.918
32 H 0.076 0.924
33 H 0.080 0.920
34 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.239 -5.815 -6.216 11.846
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.131 4.131
3 C -0.012 4.012
4 H 0.088 0.912
5 C -0.611 4.611
6 H 0.074 0.926
7 C -0.184 4.184
8 N -0.538 5.538
9 Si 0.896 3.104
10 H -0.208 1.208
11 H -0.211 1.211
12 H -0.214 1.214
13 C 0.313 3.687
14 O -0.335 6.335
15 C -0.131 4.131
16 N -0.148 5.148
17 C -0.187 4.187
18 C -0.146 4.146
19 C -0.132 4.132
20 N -0.106 5.106
21 C -0.075 4.075
22 H 0.052 0.948
23 H 0.082 0.918
24 H 0.068 0.932
25 H 0.057 0.943
26 H 0.067 0.933
27 H 0.082 0.918
28 H 0.188 0.812
29 H 0.091 0.909
30 H 0.081 0.919
31 H 0.101 0.899
32 H 0.095 0.905
33 H 0.099 0.901
34 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges 7.395 -4.368 -4.910 9.893
hybrid contribution 1.656 -1.363 -0.811 2.292
sum 9.051 -5.731 -5.721 12.144
Atomic orbital electron populations
1.21564 0.95623 0.98952 1.02648 1.21225 0.96353 0.96236 0.99240
1.19313 0.86241 0.94923 1.00705 0.91152 1.21724 1.50249 0.94404
0.94680 0.92553 1.25922 0.95153 0.94438 1.02921 1.70776 1.38494
1.39104 1.05453 0.83562 0.76356 0.76141 0.74349 1.20821 1.21139
1.21396 1.23495 0.94571 0.68884 0.81710 1.90345 1.65870 1.37639
1.39674 1.24830 0.78975 1.10885 0.98409 1.70280 1.32667 1.14804
0.97088 1.22215 0.87703 1.09672 0.99131 1.21437 0.98773 1.10774
0.83600 1.20208 0.91312 1.02581 0.99104 1.45322 1.08086 1.50992
1.06169 1.22239 0.88661 1.03664 0.92986 0.94753 0.91777 0.93248
0.94279 0.93300 0.91838 0.81200 0.90949 0.91914 0.89943 0.90547
0.90137 0.87553
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.61 9.64 37.16 0.36 -2.25 16
2 C -0.09 -2.05 5.37 -26.73 -0.14 -2.19 16
3 C 0.01 0.21 1.56 -92.92 -0.14 0.07 16
4 H 0.07 1.95 6.79 -51.93 -0.35 1.60 16
5 C -0.57 -16.12 6.85 -34.44 -0.24 -16.36 16
6 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16
7 C 0.02 0.60 5.45 -17.82 -0.10 0.51 16
8 N -0.90 -27.64 13.56 55.43 0.75 -26.89 16
9 Si 1.07 25.53 29.91 -169.99 -5.08 20.44 16
10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16
11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16
12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
13 C 0.44 10.98 5.89 -30.96 -0.18 10.79 16
14 O -0.46 -12.10 14.68 5.51 0.08 -12.02 16
15 C 0.13 2.81 7.70 -154.46 -1.19 1.62 16
16 N -0.43 -9.30 10.88 -11.39 -0.12 -9.43 16
17 C -0.03 -0.57 11.77 -17.96 -0.21 -0.78 16
18 C -0.03 -0.41 6.93 -81.96 -0.57 -0.98 16
19 C -0.07 -0.75 9.95 36.01 0.36 -0.40 16
20 N -0.42 -7.80 3.16 -117.48 -0.37 -8.17 16
21 C 0.07 0.99 10.28 59.84 0.62 1.60 16
22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16
23 H 0.06 1.34 7.58 -51.93 -0.39 0.94 16
24 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16
25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16
26 H 0.05 1.07 8.14 -51.92 -0.42 0.65 16
27 H 0.27 8.38 6.69 -40.82 -0.27 8.11 16
28 H 0.17 2.33 8.06 -52.49 -0.42 1.91 16
29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
30 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16
31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
33 H 0.08 0.90 7.76 -51.93 -0.40 0.50 16
34 H 0.11 1.84 6.35 -51.92 -0.33 1.51 16
LS Contribution 290.75 15.07 4.38 4.38
Total: -1.00 -33.43 290.75 -6.55 -39.98
By element:
Atomic # 1 Polarization: 4.81 SS G_CDS: -4.75 Total: 0.07 kcal
Atomic # 6 Polarization: -6.92 SS G_CDS: -1.44 Total: -8.36 kcal
Atomic # 7 Polarization: -44.74 SS G_CDS: 0.26 Total: -44.49 kcal
Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal
Atomic # 14 Polarization: 25.53 SS G_CDS: -5.08 Total: 20.44 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -33.43 -6.55 -39.98 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713442848.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.795 kcal
(2) G-P(sol) polarization free energy of solvation -33.428 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.552 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.814 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds