Wall clock time and date at job start Mon Mar 30 2020 03:28:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.47355 * 2 1
4 4 H 1.09001 * 109.46973 * 305.57262 * 3 2 1
5 5 C 1.50702 * 109.47144 * 65.56698 * 3 2 1
6 6 H 1.07998 * 119.99649 * 27.39642 * 5 3 2
7 7 C 1.37879 * 120.00054 * 207.38690 * 5 3 2
8 8 N 1.31515 * 119.99730 * 353.30737 * 7 5 3
9 9 Si 1.86803 * 119.99986 * 173.58263 * 7 5 3
10 10 H 1.48493 * 109.47235 * 179.72784 * 9 7 5
11 11 H 1.48505 * 109.46683 * 299.72424 * 9 7 5
12 12 H 1.48497 * 109.47336 * 59.72269 * 9 7 5
13 13 C 1.50698 * 109.47193 * 185.57284 * 3 2 1
14 14 O 1.21337 * 119.99869 * 269.99485 * 13 3 2
15 15 C 1.46549 * 119.99955 * 90.00046 * 13 3 2
16 16 N 1.31887 * 125.89035 * 0.02562 * 15 13 3
17 17 C 1.32875 * 109.08146 * 179.97438 * 16 15 13
18 18 C 1.35827 * 108.39469 * 0.02562 * 17 16 15
19 19 C 1.50699 * 126.39963 * 179.97438 * 18 17 16
20 20 N 1.35234 * 107.20201 * 359.76969 * 18 17 16
21 21 C 1.46496 * 126.45061 * 180.21692 * 20 18 17
22 22 H 1.09001 * 109.47192 * 174.50931 * 1 2 3
23 23 H 1.09003 * 109.47054 * 294.50282 * 1 2 3
24 24 H 1.08992 * 109.47173 * 54.50486 * 1 2 3
25 25 H 1.08998 * 109.47351 * 239.99391 * 2 1 3
26 26 H 1.09012 * 109.47013 * 119.99731 * 2 1 3
27 27 H 0.96993 * 119.99890 * 354.72400 * 8 7 5
28 28 H 1.07997 * 125.79919 * 180.02562 * 17 16 15
29 29 H 1.08998 * 109.47082 * 90.02733 * 19 18 17
30 30 H 1.09003 * 109.47443 * 210.02508 * 19 18 17
31 31 H 1.08995 * 109.47146 * 330.02944 * 19 18 17
32 32 H 1.08998 * 109.47343 * 270.16494 * 21 20 18
33 33 H 1.08998 * 109.47267 * 30.16983 * 21 20 18
34 34 H 1.09008 * 109.46814 * 150.17028 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5975 1.9843 -0.8359
5 6 1.6534 2.1120 1.2936
6 1 1.5154 1.5213 2.1871
7 6 1.4762 3.4787 1.3364
8 7 1.7710 4.2132 0.2861
9 14 0.8244 4.2878 2.8889
10 1 0.7321 5.7552 2.6809
11 1 -0.5227 3.7464 3.2010
12 1 1.7456 4.0049 4.0187
13 6 3.5407 1.4447 -0.1380
14 8 4.2410 1.4116 0.8523
15 6 4.1541 1.4868 -1.4682
16 7 3.5074 1.5255 -2.6170
17 6 4.3889 1.5568 -3.6108
18 6 5.6377 1.5368 -3.0770
19 6 6.9369 1.5591 -3.8402
20 7 5.4973 1.4977 -1.7325
21 6 6.5789 1.4694 -0.7449
22 1 -0.3634 -1.0230 -0.0983
23 1 -0.3633 0.4262 0.9351
24 1 -0.3633 0.5966 -0.8366
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 2.1844 3.8049 -0.4906
28 1 4.1524 1.5921 -4.6640
29 1 7.2525 2.5915 -3.9901
30 1 7.7000 1.0245 -3.2743
31 1 6.7981 1.0774 -4.8080
32 1 6.8496 0.4353 -0.5319
33 1 7.4462 1.9978 -1.1407
34 1 6.2457 1.9541 0.1728
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713442848.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:01
Heat of formation + Delta-G solvation = -16.274240 kcal
Electronic energy + Delta-G solvation = -17042.403958 eV
Core-core repulsion = 14361.099953 eV
Total energy + Delta-G solvation = -2681.304005 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-43.28949 -40.06164 -36.54932 -35.21842 -33.87232 -32.88765 -29.61101 -28.17834
-27.85495 -25.81488 -23.98077 -22.51337 -21.28477 -20.47549 -18.71883 -18.01554
-17.13876 -16.64850 -16.03864 -15.75712 -15.53991 -15.10304 -14.90157 -14.26632
-14.16989 -14.08976 -13.72717 -13.70397 -13.41050 -13.17553 -12.84906 -12.71867
-12.61439 -12.00587 -11.92311 -11.53292 -11.15576 -10.88991 -10.81291 -10.66646
-10.30406 -9.33338 -8.65837 -6.36957 0.13474 1.44627 1.51527 1.57233
1.64313 1.78805 2.32084 2.55798 3.00739 3.31438 3.64601 3.76274
4.05200 4.17199 4.24432 4.26758 4.40820 4.45918 4.47243 4.67863
4.75130 4.82538 4.99921 5.03352 5.05928 5.19917 5.32367 5.37247
5.53051 5.64505 5.92173 5.94696 6.15627 6.51492 6.61511 7.00267
7.41127 8.71831
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.027676 B = 0.008088 C = 0.007336
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1011.472720 B = 3460.878095 C = 3816.124826
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 C -0.088 4.088
3 C 0.003 3.997
4 H 0.043 0.957
5 C -0.578 4.578
6 H 0.050 0.950
7 C -0.030 4.030
8 N -0.931 5.931
9 Si 1.112 2.888
10 H -0.284 1.284
11 H -0.261 1.261
12 H -0.277 1.277
13 C 0.435 3.565
14 O -0.493 6.493
15 C 0.067 3.933
16 N -0.453 5.453
17 C -0.056 4.056
18 C 0.007 3.993
19 C -0.073 4.073
20 N -0.423 5.423
21 C 0.061 3.939
22 H 0.071 0.929
23 H 0.050 0.950
24 H 0.041 0.959
25 H 0.049 0.951
26 H 0.046 0.954
27 H 0.255 0.745
28 H 0.205 0.795
29 H 0.091 0.909
30 H 0.083 0.917
31 H 0.110 0.890
32 H 0.095 0.905
33 H 0.124 0.876
34 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.771 -6.529 -7.385 13.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.126 4.126
3 C -0.017 4.017
4 H 0.061 0.939
5 C -0.616 4.616
6 H 0.068 0.932
7 C -0.229 4.229
8 N -0.568 5.568
9 Si 0.933 3.067
10 H -0.209 1.209
11 H -0.186 1.186
12 H -0.203 1.203
13 C 0.314 3.686
14 O -0.367 6.367
15 C -0.186 4.186
16 N -0.175 5.175
17 C -0.210 4.210
18 C -0.115 4.115
19 C -0.131 4.131
20 N -0.104 5.104
21 C -0.079 4.079
22 H 0.090 0.910
23 H 0.069 0.931
24 H 0.060 0.940
25 H 0.067 0.933
26 H 0.065 0.935
27 H 0.064 0.936
28 H 0.221 0.779
29 H 0.109 0.891
30 H 0.102 0.898
31 H 0.129 0.871
32 H 0.114 0.886
33 H 0.142 0.858
34 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges 8.916 -5.113 -6.062 11.933
hybrid contribution 1.306 -1.209 -0.628 1.887
sum 10.222 -6.322 -6.690 13.756
Atomic orbital electron populations
1.21508 0.93924 1.01095 1.01605 1.21198 0.97847 0.94035 0.99537
1.19266 0.87470 0.96450 0.98509 0.93872 1.21971 1.49680 0.94624
0.95320 0.93216 1.27330 0.95059 0.95564 1.04913 1.70900 1.40702
1.39238 1.05939 0.83018 0.77203 0.75227 0.71230 1.20945 1.18564
1.20278 1.23076 0.94245 0.68251 0.83061 1.90308 1.66097 1.39533
1.40775 1.23909 0.81144 1.16384 0.97207 1.70168 1.34690 1.14648
0.97996 1.22959 0.87969 1.10095 1.00013 1.22429 1.00739 1.05831
0.82452 1.20503 0.88398 1.04434 0.99720 1.45507 1.07293 1.49742
1.07865 1.22451 0.88693 1.05240 0.91563 0.90991 0.93072 0.93959
0.93268 0.93496 0.93552 0.77853 0.89090 0.89840 0.87130 0.88621
0.85796 0.90710
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -4.95 9.64 71.98 0.69 -4.25 16
2 C -0.09 -3.98 5.37 30.59 0.16 -3.82 16
3 C 0.00 0.17 1.56 -12.29 -0.02 0.15 16
4 H 0.04 2.54 6.79 -2.39 -0.02 2.52 16
5 C -0.58 -33.67 6.85 25.60 0.18 -33.49 16
6 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16
7 C -0.03 -1.79 5.45 84.66 0.46 -1.33 16
8 N -0.93 -59.17 13.56 21.45 0.29 -58.87 16
9 Si 1.11 52.08 29.91 68.60 2.05 54.14 16
10 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16
11 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16
12 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16
13 C 0.44 22.78 5.89 27.85 0.16 22.94 16
14 O -0.49 -26.88 14.68 -3.21 -0.05 -26.93 16
15 C 0.07 3.05 7.70 135.87 1.05 4.10 16
16 N -0.45 -19.96 10.88 -189.95 -2.07 -22.02 16
17 C -0.06 -1.84 11.77 83.98 0.99 -0.86 16
18 C 0.01 0.21 6.93 41.47 0.29 0.50 16
19 C -0.07 -1.10 9.95 71.24 0.71 -0.39 16
20 N -0.42 -15.07 3.16 -525.60 -1.66 -16.73 16
21 C 0.06 1.73 10.28 127.77 1.31 3.04 16
22 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16
23 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16
24 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16
25 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
26 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16
27 H 0.25 16.64 6.69 -92.71 -0.62 16.02 16
28 H 0.20 5.01 8.06 -2.91 -0.02 4.99 16
29 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16
30 H 0.08 0.99 7.82 -2.39 -0.02 0.97 16
31 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16
32 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16
33 H 0.12 2.34 7.76 -2.39 -0.02 2.32 16
34 H 0.07 2.63 6.35 -2.38 -0.02 2.61 16
Total: -1.00 -77.18 290.75 5.78 -71.40
By element:
Atomic # 1 Polarization: 11.22 SS G_CDS: 1.23 Total: 12.45 kcal
Atomic # 6 Polarization: -19.41 SS G_CDS: 5.98 Total: -13.42 kcal
Atomic # 7 Polarization: -94.19 SS G_CDS: -3.44 Total: -97.62 kcal
Atomic # 8 Polarization: -26.88 SS G_CDS: -0.05 Total: -26.93 kcal
Atomic # 14 Polarization: 52.08 SS G_CDS: 2.05 Total: 54.14 kcal
Total: -77.18 5.78 -71.40 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713442848.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.121 kcal
(2) G-P(sol) polarization free energy of solvation -77.180 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.059 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.395 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.274 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds