Wall clock time and date at job start Mon Mar 30 2020 03:37:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53000 * 109.47122 * 2 1
4 4 O 1.42898 * 109.47108 * 120.00441 * 2 1 3
5 5 C 1.35914 * 117.00140 * 85.32919 * 4 2 1
6 6 C 1.38748 * 120.47483 * 174.61435 * 5 4 2
7 7 N 1.31812 * 120.67757 * 180.02562 * 6 5 4
8 8 C 1.31876 * 121.78648 * 359.72847 * 7 6 5
9 9 C 1.38210 * 120.88125 * 0.53465 * 8 7 6
10 10 C 1.50701 * 120.38312 * 179.75139 * 9 8 7
11 11 H 1.09006 * 109.47303 * 199.72201 * 10 9 8
12 12 N 1.46899 * 109.47453 * 319.72534 * 10 9 8
13 13 C 1.50703 * 109.47114 * 79.72458 * 10 9 8
14 14 H 1.07996 * 120.00041 * 359.97438 * 13 10 9
15 15 C 1.37880 * 119.99974 * 180.02562 * 13 10 9
16 16 N 1.31518 * 120.00146 * 359.97438 * 15 13 10
17 17 Si 1.86803 * 119.99881 * 180.02562 * 15 13 10
18 18 H 1.48497 * 109.47425 * 59.99321 * 17 15 13
19 19 H 1.48496 * 109.47162 * 179.97438 * 17 15 13
20 20 H 1.48503 * 109.46772 * 299.99414 * 17 15 13
21 21 C 1.38576 * 119.22762 * 359.48001 * 9 8 7
22 22 H 1.08999 * 109.47511 * 59.99370 * 1 2 3
23 23 H 1.09005 * 109.47394 * 179.97438 * 1 2 3
24 24 H 1.08998 * 109.47364 * 299.99776 * 1 2 3
25 25 H 1.09005 * 109.46819 * 240.00564 * 2 1 3
26 26 H 1.09004 * 109.46690 * 179.97438 * 3 2 1
27 27 H 1.08998 * 109.47375 * 300.00120 * 3 2 1
28 28 H 1.08997 * 109.46889 * 60.00850 * 3 2 1
29 29 H 1.07995 * 119.65853 * 0.03774 * 6 5 4
30 30 H 1.08000 * 119.55927 * 180.26841 * 8 7 6
31 31 H 1.00892 * 111.00066 * 59.99928 * 12 10 9
32 32 H 1.00899 * 111.00211 * 183.95470 * 12 10 9
33 33 H 0.96990 * 119.99624 * 180.02562 * 16 15 13
34 34 H 1.07995 * 120.81266 * 180.27521 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 8 2.0063 -0.6737 1.1667
5 6 2.1190 -2.0263 1.0954
6 6 2.6779 -2.7421 2.1444
7 7 2.7896 -4.0539 2.0793
8 6 2.3750 -4.7351 1.0289
9 6 1.8127 -4.0914 -0.0572
10 6 1.3478 -4.8805 -1.2540
11 1 1.2685 -4.2191 -2.1168
12 7 2.3149 -5.9479 -1.5425
13 6 0.0003 -5.4889 -0.9620
14 1 -0.4719 -5.3214 -0.0053
15 6 -0.6291 -6.2604 -1.9158
16 7 -0.0537 -6.4649 -3.0807
17 14 -2.2996 -7.0140 -1.5541
18 1 -3.2771 -5.9347 -1.2633
19 1 -2.7577 -7.7916 -2.7333
20 1 -2.1922 -7.9145 -0.3781
21 6 1.6761 -2.7127 -0.0305
22 1 -0.3634 0.5139 -0.8899
23 1 -0.3634 -1.0277 -0.0005
24 1 -0.3634 0.5138 0.8900
25 1 1.8933 -0.5138 -0.8901
26 1 3.1300 1.4424 0.0005
27 1 1.6766 1.9564 -0.8899
28 1 1.6767 1.9562 0.8900
29 1 3.0248 -2.2191 3.0233
30 1 2.4803 -5.8098 1.0155
31 1 2.4063 -6.5749 -0.7574
32 1 2.0594 -6.4509 -2.3791
33 1 -0.4967 -7.0073 -3.7517
34 1 1.2363 -2.1841 -0.8632
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000713738389.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:37:11
Heat of formation + Delta-G solvation = -36.042045 kcal
Electronic energy + Delta-G solvation = -16665.269030 eV
Core-core repulsion = 13983.107829 eV
Total energy + Delta-G solvation = -2682.161201 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.64797 -39.51514 -36.88724 -34.25316 -33.83334 -32.25737 -30.52766 -28.22590
-28.02908 -25.22952 -24.91107 -22.39415 -21.74836 -18.98529 -18.60754 -17.73302
-17.64540 -16.78532 -16.46382 -15.90772 -15.29709 -15.12014 -14.86892 -14.34045
-14.20932 -13.86386 -13.43025 -13.31434 -13.14836 -13.05025 -12.88889 -12.85776
-12.56024 -12.09800 -12.04306 -11.85394 -11.70285 -10.83530 -10.42030 -10.35228
-9.31457 -9.19552 -8.17461 -6.43451 0.33443 0.34981 1.36935 1.38446
1.46264 2.15011 2.33494 2.92217 3.01594 3.63391 3.72712 3.86165
3.89403 4.01355 4.13820 4.27454 4.33447 4.62277 4.68226 4.76911
4.80178 4.88053 4.90431 5.03334 5.11410 5.21485 5.28358 5.57992
5.58737 5.68783 5.97802 6.33227 6.56190 6.84702 7.03779 7.09123
7.33378 8.77458
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.024894 B = 0.007184 C = 0.006346
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1124.480841 B = 3896.399727 C = 4411.250191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C 0.064 3.936
3 C -0.140 4.140
4 O -0.309 6.309
5 C 0.086 3.914
6 C 0.042 3.958
7 N -0.460 5.460
8 C 0.053 3.947
9 C -0.054 4.054
10 C 0.250 3.750
11 H 0.019 0.981
12 N -0.842 5.842
13 C -0.563 4.563
14 H 0.045 0.955
15 C 0.029 3.971
16 N -0.912 5.912
17 Si 0.957 3.043
18 H -0.276 1.276
19 H -0.279 1.279
20 H -0.273 1.273
21 C -0.177 4.177
22 H 0.092 0.908
23 H 0.040 0.960
24 H 0.073 0.927
25 H 0.066 0.934
26 H 0.065 0.935
27 H 0.097 0.903
28 H 0.072 0.928
29 H 0.182 0.818
30 H 0.152 0.848
31 H 0.320 0.680
32 H 0.349 0.651
33 H 0.270 0.730
34 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.852 11.812 4.789 12.879
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.235 4.235
2 C 0.008 3.992
3 C -0.196 4.196
4 O -0.222 6.222
5 C 0.038 3.962
6 C -0.117 4.117
7 N -0.169 5.169
8 C -0.104 4.104
9 C -0.057 4.057
10 C 0.139 3.861
11 H 0.037 0.963
12 N -0.371 5.371
13 C -0.602 4.602
14 H 0.063 0.937
15 C -0.172 4.172
16 N -0.550 5.550
17 Si 0.782 3.218
18 H -0.201 1.201
19 H -0.204 1.204
20 H -0.198 1.198
21 C -0.204 4.204
22 H 0.110 0.890
23 H 0.059 0.941
24 H 0.092 0.908
25 H 0.085 0.915
26 H 0.084 0.916
27 H 0.116 0.884
28 H 0.091 0.909
29 H 0.199 0.801
30 H 0.170 0.830
31 H 0.131 0.869
32 H 0.164 0.836
33 H 0.079 0.921
34 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 2.785 12.020 5.369 13.456
hybrid contribution -2.301 -0.945 -0.971 2.670
sum 0.484 11.075 4.398 11.926
Atomic orbital electron populations
1.22366 0.94602 1.02280 1.04279 1.22753 0.94945 0.94882 0.86582
1.21850 1.02070 0.91415 1.04309 1.86077 1.81250 1.14926 1.39985
1.20083 0.96790 0.84149 0.95193 1.22435 1.01424 0.89199 0.98668
1.67660 1.15607 1.07975 1.25619 1.22351 0.98370 1.00439 0.89198
1.21135 0.93333 0.93786 0.97435 1.17731 0.88689 0.90252 0.89424
0.96339 1.59476 1.51059 1.17594 1.09020 1.21904 1.05111 1.32412
1.00793 0.93685 1.25674 1.00987 0.96153 0.94422 1.69813 1.40050
1.39331 1.05852 0.85628 0.79852 0.78471 0.77804 1.20120 1.20375
1.19774 1.21676 1.04642 0.94628 0.99455 0.88955 0.94092 0.90796
0.91549 0.91616 0.88401 0.90871 0.80070 0.83037 0.86919 0.83615
0.92054 0.84411
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -4.11 9.20 71.98 0.66 -3.45 16
2 C 0.06 1.55 2.85 30.59 0.09 1.64 16
3 C -0.14 -2.35 9.56 71.98 0.69 -1.66 16
4 O -0.31 -9.15 9.81 -92.58 -0.91 -10.06 16
5 C 0.09 2.97 6.62 22.60 0.15 3.12 16
6 C 0.04 1.43 11.14 84.82 0.95 2.37 16
7 N -0.46 -17.79 10.35 -195.45 -2.02 -19.81 16
8 C 0.05 2.22 10.46 84.68 0.89 3.10 16
9 C -0.05 -2.39 4.90 -19.79 -0.10 -2.49 16
10 C 0.25 12.42 2.96 43.42 0.13 12.55 16
11 H 0.02 1.02 8.03 -2.38 -0.02 1.00 16
12 N -0.84 -39.87 9.02 -174.94 -1.58 -41.45 16
13 C -0.56 -29.96 8.71 25.60 0.22 -29.73 16
14 H 0.04 2.45 7.74 -2.91 -0.02 2.42 16
15 C 0.03 1.51 5.38 84.65 0.46 1.97 16
16 N -0.91 -49.11 11.54 21.45 0.25 -48.86 16
17 Si 0.96 42.07 29.54 68.60 2.03 44.10 16
18 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16
19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16
20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16
21 C -0.18 -6.92 8.00 22.56 0.18 -6.74 16
22 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16
23 H 0.04 1.17 6.98 -2.38 -0.02 1.15 16
24 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16
25 H 0.07 1.72 6.32 -2.38 -0.02 1.70 16
26 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16
27 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16
28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16
29 H 0.18 4.97 8.06 -2.91 -0.02 4.94 16
30 H 0.15 6.15 6.68 -2.91 -0.02 6.13 16
31 H 0.32 14.31 7.37 -89.70 -0.66 13.65 16
32 H 0.35 17.61 7.08 -89.69 -0.63 16.97 16
33 H 0.27 13.85 8.31 -92.72 -0.77 13.08 16
34 H 0.14 5.13 5.61 -2.91 -0.02 5.11 16
Total: -1.00 -58.13 284.26 1.90 -56.24
By element:
Atomic # 1 Polarization: 39.36 SS G_CDS: -0.18 Total: 39.18 kcal
Atomic # 6 Polarization: -23.64 SS G_CDS: 4.31 Total: -19.33 kcal
Atomic # 7 Polarization: -106.77 SS G_CDS: -3.36 Total: -110.13 kcal
Atomic # 8 Polarization: -9.15 SS G_CDS: -0.91 Total: -10.06 kcal
Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal
Total: -58.13 1.90 -56.24 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000713738389.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.195 kcal
(2) G-P(sol) polarization free energy of solvation -58.133 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.938 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.237 kcal
(6) G-S(sol) free energy of system = (1) + (5) -36.042 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds