Wall clock time and date at job start Mon Mar 30 2020 03:04:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30256 * 125.61889 * 2 1
4 4 C 1.34473 * 108.69793 * 180.02562 * 3 2 1
5 5 C 1.50703 * 126.16617 * 180.02562 * 4 3 2
6 6 N 1.46895 * 109.46959 * 275.03107 * 5 4 3
7 7 C 1.46908 * 111.00101 * 189.99894 * 6 5 4
8 8 C 1.50695 * 109.47595 * 162.29004 * 7 6 5
9 9 H 1.08002 * 119.99716 * 354.67243 * 8 7 6
10 10 C 1.37871 * 120.00091 * 174.67697 * 8 7 6
11 11 N 1.31511 * 120.00165 * 359.97438 * 10 8 7
12 12 Si 1.86800 * 120.00068 * 180.02562 * 10 8 7
13 13 H 1.48497 * 109.47530 * 59.99237 * 12 10 8
14 14 H 1.48496 * 109.47296 * 179.97438 * 12 10 8
15 15 H 1.48507 * 109.47085 * 299.99514 * 12 10 8
16 16 C 1.46892 * 111.00655 * 66.04454 * 6 5 4
17 17 C 1.53001 * 117.49833 * 265.94798 * 16 6 5
18 18 C 1.53004 * 117.50243 * 197.28758 * 16 6 5
19 19 C 1.34335 * 107.67277 * 0.26502 * 4 3 2
20 20 O 1.33964 * 125.61887 * 180.02562 * 2 1 3
21 21 H 1.08999 * 109.46980 * 89.99590 * 1 2 3
22 22 H 1.09000 * 109.47179 * 209.99596 * 1 2 3
23 23 H 1.09000 * 109.47016 * 329.99594 * 1 2 3
24 24 H 1.08999 * 109.47301 * 155.02629 * 5 4 3
25 25 H 1.09005 * 109.46919 * 35.02632 * 5 4 3
26 26 H 1.09001 * 109.46934 * 42.28953 * 7 6 5
27 27 H 1.08995 * 109.46706 * 282.29504 * 7 6 5
28 28 H 0.96999 * 120.00064 * 180.02562 * 11 10 8
29 29 H 1.08999 * 115.55280 * 51.60988 * 16 6 5
30 30 H 1.09002 * 117.49538 * 359.97438 * 17 16 6
31 31 H 1.09002 * 117.50082 * 145.01835 * 17 16 6
32 32 H 1.08997 * 117.49841 * 214.97492 * 18 16 6
33 33 H 1.08994 * 117.49699 * 359.97438 * 18 16 6
34 34 H 1.07995 * 126.44378 * 179.73070 * 19 4 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2656 1.0589 0.0000
4 6 3.5522 0.6675 -0.0006
5 6 4.7571 1.5726 -0.0002
6 7 5.0753 1.9647 -1.3797
7 6 6.3738 2.6486 -1.4464
8 6 6.8695 2.6479 -2.8695
9 1 6.3227 2.1122 -3.6314
10 6 8.0208 3.3311 -3.1988
11 7 8.6863 3.9837 -2.2711
12 14 8.6348 3.3308 -4.9630
13 1 7.6001 3.9243 -5.8474
14 1 9.8816 4.1324 -5.0534
15 1 8.9107 1.9357 -5.3909
16 6 4.0101 2.8012 -1.9483
17 6 2.9212 2.1008 -2.7636
18 6 3.9729 2.9603 -3.4696
19 6 3.5698 -0.6757 -0.0068
20 8 2.2872 -1.0890 -0.0005
21 1 -0.3633 0.0001 -1.0277
22 1 -0.3633 -0.8900 0.5138
23 1 -0.3633 0.8899 0.5139
24 1 5.6072 1.0457 0.4331
25 1 4.5423 2.4633 0.5903
26 1 7.0913 2.1286 -0.8115
27 1 6.2613 3.6763 -1.1013
28 1 9.4962 4.4647 -2.5029
29 1 3.7136 3.6593 -1.3452
30 1 2.9955 1.0194 -2.8783
31 1 1.9085 2.4984 -2.6972
32 1 3.6516 3.9229 -3.8672
33 1 4.7391 2.4446 -4.0484
34 1 4.4469 -1.3058 -0.0130
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000723618350.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:04
Heat of formation + Delta-G solvation = 35.187138 kcal
Electronic energy + Delta-G solvation = -16779.911955 eV
Core-core repulsion = 14100.839482 eV
Total energy + Delta-G solvation = -2679.072472 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-44.16700 -39.31662 -35.97128 -35.33175 -34.38478 -32.85747 -29.89897 -28.31448
-26.23248 -24.15586 -23.08113 -22.45015 -22.19743 -20.94137 -18.70062 -17.81361
-17.60396 -16.73262 -16.45807 -16.16460 -15.57798 -15.31395 -14.87504 -14.44087
-13.90981 -13.78988 -13.66218 -13.42268 -13.12964 -12.91265 -12.64221 -12.54748
-12.38856 -12.06179 -11.72521 -11.40437 -11.27425 -11.05220 -10.72836 -10.51354
-9.61889 -9.10412 -8.14594 -6.22216 0.62562 1.42905 1.45413 1.52773
1.74562 1.96940 2.43735 3.09011 3.16005 3.18843 3.34100 3.85376
4.10389 4.16580 4.25970 4.43463 4.54714 4.58876 4.71092 4.74595
4.79693 4.83917 4.92955 5.03524 5.09070 5.12426 5.16154 5.33033
5.42004 5.50205 5.77535 6.08838 6.36744 6.58898 6.90902 6.92553
7.45563 8.96232
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.041582 B = 0.006170 C = 0.005842
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 673.198774 B = 4537.298082 C = 4791.659958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.052 4.052
2 C 0.179 3.821
3 N -0.499 5.499
4 C -0.013 4.013
5 C 0.137 3.863
6 N -0.508 5.508
7 C 0.210 3.790
8 C -0.507 4.507
9 H 0.069 0.931
10 C 0.002 3.998
11 N -0.938 5.938
12 Si 0.962 3.038
13 H -0.268 1.268
14 H -0.286 1.286
15 H -0.269 1.269
16 C 0.020 3.980
17 C -0.130 4.130
18 C -0.165 4.165
19 C -0.063 4.063
20 O -0.211 6.211
21 H 0.105 0.895
22 H 0.108 0.892
23 H 0.105 0.895
24 H 0.093 0.907
25 H 0.028 0.972
26 H 0.009 0.991
27 H -0.036 1.036
28 H 0.262 0.738
29 H 0.058 0.942
30 H 0.075 0.925
31 H 0.100 0.900
32 H 0.094 0.906
33 H 0.091 0.909
34 H 0.237 0.763
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.162 -8.741 3.249 17.800
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.109 4.109
2 C -0.028 4.028
3 N -0.229 5.229
4 C -0.131 4.131
5 C 0.008 3.992
6 N -0.233 5.233
7 C 0.084 3.916
8 C -0.545 4.545
9 H 0.087 0.913
10 C -0.195 4.195
11 N -0.579 5.579
12 Si 0.787 3.213
13 H -0.193 1.193
14 H -0.212 1.212
15 H -0.194 1.194
16 C -0.089 4.089
17 C -0.167 4.167
18 C -0.202 4.202
19 C -0.134 4.134
20 O -0.098 6.098
21 H 0.123 0.877
22 H 0.127 0.873
23 H 0.124 0.876
24 H 0.111 0.889
25 H 0.046 0.954
26 H 0.027 0.973
27 H -0.018 1.018
28 H 0.071 0.929
29 H 0.075 0.925
30 H 0.093 0.907
31 H 0.118 0.882
32 H 0.112 0.888
33 H 0.109 0.891
34 H 0.254 0.746
Dipole moment (debyes) X Y Z Total
from point charges -15.213 -8.478 3.007 17.673
hybrid contribution 1.275 0.521 -0.061 1.378
sum -13.938 -7.956 2.946 16.317
Atomic orbital electron populations
1.20458 0.78342 1.06224 1.05850 1.27231 0.97973 0.78168 0.99433
1.70304 1.01981 1.31439 1.19197 1.21459 0.92528 0.93298 1.05861
1.20239 0.92844 0.95862 0.90228 1.61908 1.02177 1.42031 1.17157
1.19403 0.84982 0.90202 0.96980 1.21470 1.08059 1.30345 0.94617
0.91262 1.25828 0.96981 0.95151 1.01568 1.70080 1.18181 1.34580
1.35046 0.85541 0.77533 0.78355 0.79847 1.19335 1.21161 1.19360
1.21938 0.96265 0.96942 0.93793 1.22689 0.93759 0.97671 1.02600
1.23069 1.01470 1.01356 0.94351 1.25107 0.85328 0.95864 1.07104
1.84421 1.16974 1.37979 1.70437 0.87670 0.87322 0.87633 0.88908
0.95397 0.97344 1.01802 0.92923 0.92483 0.90652 0.88164 0.88807
0.89079 0.74641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -0.72 10.51 71.24 0.75 0.03 16
2 C 0.18 4.57 8.34 88.34 0.74 5.31 16
3 N -0.50 -16.12 10.20 -291.98 -2.98 -19.10 16
4 C -0.01 -0.42 5.60 41.26 0.23 -0.19 16
5 C 0.14 5.27 5.50 85.56 0.47 5.74 16
6 N -0.51 -22.84 4.57 -880.07 -4.02 -26.86 16
7 C 0.21 11.29 4.75 85.55 0.41 11.70 16
8 C -0.51 -28.46 8.03 25.60 0.21 -28.26 16
9 H 0.07 3.81 5.50 -2.91 -0.02 3.80 16
10 C 0.00 0.12 5.46 84.65 0.46 0.58 16
11 N -0.94 -56.68 13.29 21.44 0.28 -56.40 16
12 Si 0.96 44.43 29.54 68.60 2.03 46.45 16
13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16
14 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16
15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16
16 C 0.02 0.84 4.34 44.92 0.20 1.03 16
17 C -0.13 -4.62 8.94 30.62 0.27 -4.34 16
18 C -0.17 -6.62 9.40 30.62 0.29 -6.33 16
19 C -0.06 -1.79 12.08 66.93 0.81 -0.98 16
20 O -0.21 -5.62 10.77 -3.69 -0.04 -5.66 16
21 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16
22 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16
23 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16
24 H 0.09 3.33 7.84 -2.39 -0.02 3.31 16
25 H 0.03 1.13 8.12 -2.38 -0.02 1.11 16
26 H 0.01 0.48 7.77 -2.39 -0.02 0.46 16
27 H -0.04 -2.14 8.03 -2.39 -0.02 -2.16 16
28 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
29 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16
30 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16
31 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16
32 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16
33 H 0.09 4.05 5.62 -2.39 -0.01 4.03 16
34 H 0.24 5.16 8.06 -2.91 -0.02 5.14 16
Total: -1.00 -68.13 288.89 1.18 -66.94
By element:
Atomic # 1 Polarization: 9.24 SS G_CDS: 1.09 Total: 10.32 kcal
Atomic # 6 Polarization: -20.54 SS G_CDS: 4.83 Total: -15.71 kcal
Atomic # 7 Polarization: -95.64 SS G_CDS: -6.71 Total: -102.36 kcal
Atomic # 8 Polarization: -5.62 SS G_CDS: -0.04 Total: -5.66 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal
Total: -68.13 1.18 -66.94 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000723618350.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.132 kcal
(2) G-P(sol) polarization free energy of solvation -68.130 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.002 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.187 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds