Wall clock time and date at job start Mon Mar 30 2020 03:22:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 C 1.53003 * 109.47105 * 297.38641 * 3 2 1
5 5 N 1.46501 * 109.46570 * 180.02562 * 4 3 2
6 6 C 1.34785 * 119.99451 * 179.97438 * 5 4 3
7 7 O 1.21587 * 119.99995 * 5.05234 * 6 5 4
8 8 N 1.34772 * 119.99400 * 185.04937 * 6 5 4
9 9 C 1.46506 * 119.99712 * 175.18347 * 8 6 5
10 10 C 1.52992 * 109.47372 * 185.07542 * 9 8 6
11 11 C 1.50706 * 115.54976 * 64.84028 * 10 9 8
12 12 H 1.07998 * 120.00397 * 266.80507 * 11 10 9
13 13 C 1.37876 * 119.99463 * 86.80074 * 11 10 9
14 14 N 1.31520 * 119.99552 * 178.76749 * 13 11 10
15 15 Si 1.86804 * 120.00281 * 358.77593 * 13 11 10
16 16 H 1.48494 * 109.47406 * 91.37328 * 15 13 11
17 17 H 1.48503 * 109.46840 * 211.37394 * 15 13 11
18 18 H 1.48494 * 109.46821 * 331.36891 * 15 13 11
19 19 C 1.52998 * 117.50087 * 279.17549 * 10 9 8
20 20 C 1.52996 * 117.50285 * 210.51545 * 10 9 8
21 21 H 4.44652 * 5.63372 * 180.02562 * 4 1 2
22 22 H 1.08998 * 109.46374 * 177.38819 * 3 2 1
23 23 H 1.08997 * 109.46782 * 57.38614 * 3 2 1
24 24 H 1.08996 * 109.46976 * 60.00430 * 4 3 2
25 25 H 1.09000 * 109.46797 * 299.99838 * 4 3 2
26 26 H 0.96996 * 120.00033 * 359.97438 * 5 4 3
27 27 H 0.96999 * 120.00604 * 354.91650 * 8 6 5
28 28 H 1.09002 * 109.46972 * 305.08249 * 9 8 6
29 29 H 1.09002 * 109.46788 * 65.07570 * 9 8 6
30 30 H 0.97005 * 119.99719 * 180.02562 * 14 13 11
31 31 H 1.09004 * 117.49824 * 359.97438 * 19 10 9
32 32 H 1.08996 * 117.50142 * 145.01958 * 19 10 9
33 33 H 1.09002 * 117.49925 * 214.98215 * 20 10 9
34 34 H 1.09004 * 117.49630 * 359.97036 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 6 3.1564 -0.6627 1.2809
5 7 4.6214 -0.6614 1.2810
6 6 5.2955 -1.1975 2.3178
7 8 4.6914 -1.7634 3.2083
8 7 6.6392 -1.1061 2.3671
9 6 7.3639 -1.5945 3.5431
10 6 8.8501 -1.2603 3.4014
11 6 9.1883 0.2083 3.3939
12 1 9.2678 0.7394 2.4569
13 6 9.3962 0.8739 4.5834
14 7 9.7151 2.1498 4.5758
15 14 9.2250 -0.0366 6.2055
16 1 10.5443 -0.5891 6.6047
17 1 8.7443 0.9016 7.2514
18 1 8.2503 -1.1460 6.0499
19 6 9.7025 -2.1859 2.5310
20 6 9.8538 -2.2130 4.0540
21 1 -1.0499 -0.0003 0.0001
22 1 3.0088 1.0274 -0.0468
23 1 3.0096 -0.5531 -0.8656
24 1 2.7935 -1.6894 1.3277
25 1 2.7928 -0.1089 2.1464
26 1 5.1061 -0.2748 0.5351
27 1 7.1269 -0.7206 1.6225
28 1 6.9675 -1.1159 4.4387
29 1 7.2403 -2.6745 3.6233
30 1 9.8617 2.6180 5.4127
31 1 9.2045 -3.0332 2.0596
32 1 10.5081 -1.7327 1.9533
33 1 10.7588 -1.7776 4.4776
34 1 9.4552 -3.0777 4.5847
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000797563106.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:04
Heat of formation + Delta-G solvation = 42.979291 kcal
Electronic energy + Delta-G solvation = -16080.381779 eV
Core-core repulsion = 13401.647200 eV
Total energy + Delta-G solvation = -2678.734579 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.52850 -37.22571 -35.82177 -33.49290 -33.19558 -32.11832 -29.71935 -26.59317
-25.17314 -23.24574 -21.73229 -20.50408 -19.30658 -18.43367 -17.51222 -16.57728
-15.78199 -15.69932 -14.99698 -14.42215 -14.27605 -14.07298 -13.61272 -13.11620
-12.83313 -12.56211 -12.49261 -12.21041 -11.82411 -11.14620 -10.75493 -10.51264
-10.46549 -10.32876 -10.17100 -9.84042 -9.59708 -9.18037 -8.92673 -8.63432
-8.58765 -8.14425 -6.15309 -4.19667 2.53361 2.64852 3.14822 3.29872
3.40245 3.46536 3.70390 4.21648 4.41114 4.66990 4.88144 5.00515
5.04827 5.14875 5.27630 5.70336 5.78007 5.83955 5.90243 6.02826
6.08057 6.28109 6.42511 6.49789 6.67907 6.70252 7.01374 7.08993
7.19012 7.37983 7.44727 7.68699 8.41405 8.54483 8.84452 9.08990
9.48090 10.96044
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032547 B = 0.005232 C = 0.005000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 860.091897 B = 5350.099831 C = 5598.281122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.182 4.182
3 C -0.024 4.024
4 C 0.147 3.853
5 N -0.754 5.754
6 C 0.701 3.299
7 O -0.603 6.603
8 N -0.719 5.719
9 C 0.175 3.825
10 C -0.016 4.016
11 C -0.489 4.489
12 H 0.077 0.923
13 C 0.080 3.920
14 N -0.896 5.896
15 Si 0.878 3.122
16 H -0.278 1.278
17 H -0.294 1.294
18 H -0.256 1.256
19 C -0.179 4.179
20 C -0.193 4.193
21 H 0.218 0.782
22 H 0.095 0.905
23 H 0.093 0.907
24 H 0.067 0.933
25 H 0.067 0.933
26 H 0.396 0.604
27 H 0.399 0.601
28 H 0.064 0.936
29 H 0.040 0.960
30 H 0.265 0.735
31 H 0.073 0.927
32 H 0.087 0.913
33 H 0.090 0.910
34 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.377 -5.017 -8.868 14.542
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C -0.183 4.183
3 C -0.061 4.061
4 C 0.022 3.978
5 N -0.411 5.411
6 C 0.401 3.599
7 O -0.483 6.483
8 N -0.372 5.372
9 C 0.051 3.949
10 C -0.017 4.017
11 C -0.526 4.526
12 H 0.095 0.905
13 C -0.123 4.123
14 N -0.533 5.533
15 Si 0.706 3.294
16 H -0.204 1.204
17 H -0.220 1.220
18 H -0.180 1.180
19 C -0.216 4.216
20 C -0.230 4.230
21 H 0.235 0.765
22 H 0.113 0.887
23 H 0.111 0.889
24 H 0.086 0.914
25 H 0.085 0.915
26 H 0.230 0.770
27 H 0.233 0.767
28 H 0.082 0.918
29 H 0.058 0.942
30 H 0.075 0.925
31 H 0.091 0.909
32 H 0.106 0.894
33 H 0.108 0.892
34 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -10.865 -5.350 -7.874 14.445
hybrid contribution 0.257 0.079 0.276 0.385
sum -10.607 -5.271 -7.599 14.072
Atomic orbital electron populations
1.24899 0.95949 1.00972 1.00315 1.22744 0.94151 1.00541 1.00851
1.18866 0.85386 1.02857 0.98941 1.20960 0.79176 1.01089 0.96589
1.45004 1.06426 1.66203 1.23481 1.15962 0.82218 0.79565 0.82141
1.90876 1.68377 1.49158 1.39871 1.44972 1.03966 1.65795 1.22430
1.21018 0.91310 0.95916 0.86699 1.19633 0.87708 0.93727 1.00644
1.20172 1.48283 0.89547 0.94585 0.90459 1.24962 0.93626 0.94575
0.99149 1.69889 1.46848 1.09125 1.27447 0.86864 0.79096 0.80150
0.83295 1.20426 1.22038 1.18005 1.22840 1.04130 1.01915 0.92706
1.22952 1.02789 1.01837 0.95464 0.76542 0.88715 0.88897 0.91444
0.91453 0.77028 0.76686 0.91818 0.94176 0.92509 0.90872 0.89438
0.89156 0.90706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -1.89 19.25 29.55 0.57 -1.33 16
2 C -0.18 -1.90 13.34 -37.12 -0.50 -2.39 16
3 C -0.02 -0.21 5.82 -29.51 -0.17 -0.39 16
4 C 0.15 1.80 5.63 -4.04 -0.02 1.78 16
5 N -0.75 -10.29 5.56 -65.22 -0.36 -10.65 16
6 C 0.70 13.09 8.55 -86.92 -0.74 12.35 16
7 O -0.60 -13.65 16.36 5.29 0.09 -13.56 16
8 N -0.72 -13.47 5.46 -65.22 -0.36 -13.82 16
9 C 0.17 3.73 5.12 -4.04 -0.02 3.71 16
10 C -0.02 -0.35 0.81 -155.66 -0.13 -0.47 16
11 C -0.49 -12.78 9.29 -34.44 -0.32 -13.10 16
12 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16
13 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16
14 N -0.90 -26.51 13.96 55.43 0.77 -25.74 16
15 Si 0.88 21.51 24.88 -169.99 -4.23 17.28 16
16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16
18 H -0.26 -6.05 5.73 56.52 0.32 -5.73 16
19 C -0.18 -3.38 9.96 -26.70 -0.27 -3.65 16
20 C -0.19 -3.94 7.60 -26.70 -0.20 -4.14 16
21 H 0.22 1.24 7.80 -54.10 -0.42 0.82 16
22 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
23 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16
24 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16
25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
26 H 0.40 4.16 8.49 -40.82 -0.35 3.81 16
27 H 0.40 6.72 8.47 -40.82 -0.35 6.37 16
28 H 0.06 1.53 6.65 -51.93 -0.35 1.18 16
29 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16
30 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16
32 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16
33 H 0.09 1.93 7.27 -51.93 -0.38 1.56 16
34 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16
LS Contribution 297.17 15.07 4.48 4.48
Total: -1.00 -32.48 297.17 -6.36 -38.84
By element:
Atomic # 1 Polarization: 13.55 SS G_CDS: -4.85 Total: 8.70 kcal
Atomic # 6 Polarization: -3.62 SS G_CDS: -1.90 Total: -5.52 kcal
Atomic # 7 Polarization: -50.27 SS G_CDS: 0.05 Total: -50.22 kcal
Atomic # 8 Polarization: -13.65 SS G_CDS: 0.09 Total: -13.56 kcal
Atomic # 14 Polarization: 21.51 SS G_CDS: -4.23 Total: 17.28 kcal
Total LS contribution 4.48 Total: 4.48 kcal
Total: -32.48 -6.36 -38.84 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000797563106.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 81.817 kcal
(2) G-P(sol) polarization free energy of solvation -32.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.339 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds