Wall clock time and date at job start Mon Mar 30 2020 03:22:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17399 * 1
3 3 C 1.47206 * 179.97438 * 2 1
4 4 C 1.53003 * 109.47105 * 297.38641 * 3 2 1
5 5 N 1.46501 * 109.46570 * 180.02562 * 4 3 2
6 6 C 1.34785 * 119.99451 * 179.97438 * 5 4 3
7 7 O 1.21587 * 119.99995 * 5.05234 * 6 5 4
8 8 N 1.34772 * 119.99400 * 185.04937 * 6 5 4
9 9 C 1.46506 * 119.99712 * 175.18347 * 8 6 5
10 10 C 1.52992 * 109.47372 * 185.07542 * 9 8 6
11 11 C 1.50706 * 115.54976 * 64.84028 * 10 9 8
12 12 H 1.07998 * 120.00397 * 266.80507 * 11 10 9
13 13 C 1.37876 * 119.99463 * 86.80074 * 11 10 9
14 14 N 1.31520 * 119.99552 * 178.76749 * 13 11 10
15 15 Si 1.86804 * 120.00281 * 358.77593 * 13 11 10
16 16 H 1.48494 * 109.47406 * 91.37328 * 15 13 11
17 17 H 1.48503 * 109.46840 * 211.37394 * 15 13 11
18 18 H 1.48494 * 109.46821 * 331.36891 * 15 13 11
19 19 C 1.52998 * 117.50087 * 279.17549 * 10 9 8
20 20 C 1.52996 * 117.50285 * 210.51545 * 10 9 8
21 21 H 4.44652 * 5.63372 * 180.02562 * 4 1 2
22 22 H 1.08998 * 109.46374 * 177.38819 * 3 2 1
23 23 H 1.08997 * 109.46782 * 57.38614 * 3 2 1
24 24 H 1.08996 * 109.46976 * 60.00430 * 4 3 2
25 25 H 1.09000 * 109.46797 * 299.99838 * 4 3 2
26 26 H 0.96996 * 120.00033 * 359.97438 * 5 4 3
27 27 H 0.96999 * 120.00604 * 354.91650 * 8 6 5
28 28 H 1.09002 * 109.46972 * 305.08249 * 9 8 6
29 29 H 1.09002 * 109.46788 * 65.07570 * 9 8 6
30 30 H 0.97005 * 119.99719 * 180.02562 * 14 13 11
31 31 H 1.09004 * 117.49824 * 359.97438 * 19 10 9
32 32 H 1.08996 * 117.50142 * 145.01958 * 19 10 9
33 33 H 1.09002 * 117.49925 * 214.98215 * 20 10 9
34 34 H 1.09004 * 117.49630 * 359.97036 * 20 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6461 0.0007 0.0000
4 6 3.1564 -0.6627 1.2809
5 7 4.6214 -0.6614 1.2810
6 6 5.2955 -1.1975 2.3178
7 8 4.6914 -1.7634 3.2083
8 7 6.6392 -1.1061 2.3671
9 6 7.3639 -1.5945 3.5431
10 6 8.8501 -1.2603 3.4014
11 6 9.1883 0.2083 3.3939
12 1 9.2678 0.7394 2.4569
13 6 9.3962 0.8739 4.5834
14 7 9.7151 2.1498 4.5758
15 14 9.2250 -0.0366 6.2055
16 1 10.5443 -0.5891 6.6047
17 1 8.7443 0.9016 7.2514
18 1 8.2503 -1.1460 6.0499
19 6 9.7025 -2.1859 2.5310
20 6 9.8538 -2.2130 4.0540
21 1 -1.0499 -0.0003 0.0001
22 1 3.0088 1.0274 -0.0468
23 1 3.0096 -0.5531 -0.8656
24 1 2.7935 -1.6894 1.3277
25 1 2.7928 -0.1089 2.1464
26 1 5.1061 -0.2748 0.5351
27 1 7.1269 -0.7206 1.6225
28 1 6.9675 -1.1159 4.4387
29 1 7.2403 -2.6745 3.6233
30 1 9.8617 2.6180 5.4127
31 1 9.2045 -3.0332 2.0596
32 1 10.5081 -1.7327 1.9533
33 1 10.7588 -1.7776 4.4776
34 1 9.4552 -3.0777 4.5847
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000797563106.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:04
Heat of formation + Delta-G solvation = 19.378323 kcal
Electronic energy + Delta-G solvation = -16081.405194 eV
Core-core repulsion = 13401.647200 eV
Total energy + Delta-G solvation = -2679.757994 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.99203 -38.85485 -36.90175 -35.01794 -34.29800 -34.14056 -30.68776 -28.29900
-26.98342 -24.31916 -23.31302 -21.90517 -21.07068 -19.59716 -18.63086 -18.29561
-17.24700 -17.00221 -16.66538 -15.74970 -15.64729 -15.47281 -14.93353 -14.74542
-14.35723 -14.25108 -13.78825 -13.40689 -13.07810 -13.04650 -12.60996 -12.17038
-11.96152 -11.60153 -11.40312 -11.19970 -11.05288 -10.96473 -10.63986 -10.37578
-10.26911 -9.62004 -8.28616 -6.34172 1.34495 1.41036 1.50951 1.61048
1.92183 2.00706 2.23417 2.37941 3.06878 3.13811 3.46196 3.71934
4.03069 4.07370 4.16470 4.39400 4.44804 4.48986 4.56647 4.81195
4.89870 4.96498 4.98580 5.12563 5.15060 5.33472 5.49531 5.52191
5.65110 5.72336 6.12152 6.30331 6.70091 6.74123 7.20475 7.36340
7.64597 8.85988
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.032547 B = 0.005232 C = 0.005000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 860.091897 B = 5350.099831 C = 5598.281122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.221 4.221
3 C -0.012 4.012
4 C 0.148 3.852
5 N -0.734 5.734
6 C 0.697 3.303
7 O -0.645 6.645
8 N -0.717 5.717
9 C 0.184 3.816
10 C -0.040 4.040
11 C -0.475 4.475
12 H 0.047 0.953
13 C 0.026 3.974
14 N -0.945 5.945
15 Si 0.927 3.073
16 H -0.266 1.266
17 H -0.304 1.304
18 H -0.242 1.242
19 C -0.149 4.149
20 C -0.193 4.193
21 H 0.246 0.754
22 H 0.107 0.893
23 H 0.114 0.886
24 H 0.058 0.942
25 H 0.049 0.951
26 H 0.414 0.586
27 H 0.408 0.592
28 H 0.032 0.968
29 H 0.053 0.947
30 H 0.264 0.736
31 H 0.104 0.896
32 H 0.087 0.913
33 H 0.078 0.922
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.024 -6.620 -9.945 16.256
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.222 4.222
3 C -0.049 4.049
4 C 0.024 3.976
5 N -0.391 5.391
6 C 0.397 3.603
7 O -0.528 6.528
8 N -0.370 5.370
9 C 0.059 3.941
10 C -0.041 4.041
11 C -0.513 4.513
12 H 0.065 0.935
13 C -0.172 4.172
14 N -0.585 5.585
15 Si 0.753 3.247
16 H -0.191 1.191
17 H -0.232 1.232
18 H -0.165 1.165
19 C -0.186 4.186
20 C -0.231 4.231
21 H 0.262 0.738
22 H 0.125 0.875
23 H 0.132 0.868
24 H 0.077 0.923
25 H 0.067 0.933
26 H 0.251 0.749
27 H 0.244 0.756
28 H 0.050 0.950
29 H 0.071 0.929
30 H 0.072 0.928
31 H 0.122 0.878
32 H 0.105 0.895
33 H 0.097 0.903
34 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -11.508 -6.955 -9.015 16.189
hybrid contribution 0.398 0.597 0.504 0.877
sum -11.110 -6.358 -8.511 15.372
Atomic orbital electron populations
1.25744 0.96950 0.99745 0.98883 1.23195 0.95036 1.01767 1.02173
1.18786 0.84999 1.03454 0.97636 1.21003 0.78008 1.00733 0.97890
1.44845 1.07038 1.64649 1.22610 1.16157 0.82077 0.79493 0.82614
1.90844 1.69097 1.51078 1.41763 1.44849 1.04162 1.65905 1.22092
1.20740 0.90630 0.96324 0.86417 1.19447 0.88546 0.91750 1.04373
1.20364 1.46093 0.91807 0.93004 0.93485 1.25680 0.94032 0.95075
1.02375 1.70015 1.49621 1.10837 1.28010 0.86074 0.79794 0.79305
0.79572 1.19107 1.23167 1.16538 1.22875 1.02593 1.01166 0.92001
1.23025 1.01475 1.01693 0.96916 0.73793 0.87529 0.86813 0.92320
0.93292 0.74925 0.75601 0.94977 0.92851 0.92752 0.87779 0.89480
0.90325 0.88364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.20 -3.27 19.25 74.32 1.43 -1.84 16
2 C -0.22 -4.26 13.34 31.13 0.42 -3.85 16
3 C -0.01 -0.20 5.82 28.79 0.17 -0.03 16
4 C 0.15 3.51 5.63 86.38 0.49 4.00 16
5 N -0.73 -19.03 5.56 -478.53 -2.66 -21.70 16
6 C 0.70 25.39 8.55 179.05 1.53 26.92 16
7 O -0.65 -29.03 16.36 -3.99 -0.07 -29.09 16
8 N -0.72 -25.96 5.46 -478.53 -2.61 -28.57 16
9 C 0.18 7.58 5.12 86.38 0.44 8.02 16
10 C -0.04 -1.68 0.81 -52.93 -0.04 -1.72 16
11 C -0.47 -24.90 9.29 25.60 0.24 -24.67 16
12 H 0.05 2.69 8.06 -2.91 -0.02 2.67 16
13 C 0.03 1.47 5.47 84.65 0.46 1.94 16
14 N -0.94 -57.33 13.96 21.45 0.30 -57.03 16
15 Si 0.93 44.28 24.88 68.60 1.71 45.99 16
16 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16
17 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16
18 H -0.24 -10.94 5.73 99.48 0.57 -10.37 16
19 C -0.15 -5.17 9.96 30.62 0.30 -4.86 16
20 C -0.19 -7.34 7.60 30.62 0.23 -7.10 16
21 H 0.25 2.17 7.80 -4.42 -0.03 2.13 16
22 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16
23 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16
24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
25 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
26 H 0.41 7.81 8.49 -92.71 -0.79 7.03 16
27 H 0.41 13.14 8.47 -92.71 -0.79 12.35 16
28 H 0.03 1.52 6.65 -2.39 -0.02 1.50 16
29 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16
30 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16
31 H 0.10 3.01 8.14 -2.38 -0.02 3.00 16
32 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16
33 H 0.08 3.18 7.27 -2.39 -0.02 3.16 16
34 H 0.10 3.29 8.14 -2.38 -0.02 3.27 16
Total: -1.00 -70.99 297.17 1.73 -69.26
By element:
Atomic # 1 Polarization: 24.93 SS G_CDS: -0.61 Total: 24.32 kcal
Atomic # 6 Polarization: -8.86 SS G_CDS: 5.67 Total: -3.19 kcal
Atomic # 7 Polarization: -102.32 SS G_CDS: -4.97 Total: -107.29 kcal
Atomic # 8 Polarization: -29.03 SS G_CDS: -0.07 Total: -29.09 kcal
Atomic # 14 Polarization: 44.28 SS G_CDS: 1.71 Total: 45.99 kcal
Total: -70.99 1.73 -69.26 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000797563106.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.639 kcal
(2) G-P(sol) polarization free energy of solvation -70.993 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.645 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.378 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds