Wall clock time and date at job start Mon Mar 30 2020 03:42:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.08995 * 109.47451 * 2 1
4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3
5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1
6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1
7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2
8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2
9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4
10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4
11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4
12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3
13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1
14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1
15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2
16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12
17 17 C 1.34856 * 125.89013 * 95.02478 * 16 15 14
18 18 C 1.40889 * 107.41426 * 180.02562 * 17 16 15
19 19 C 1.34846 * 107.41907 * 359.97438 * 18 17 16
20 20 N 1.36340 * 108.22235 * 359.74024 * 19 18 17
21 21 C 1.46501 * 125.64281 * 180.26577 * 20 19 18
22 22 H 1.08999 * 109.47215 * 175.07421 * 1 2 3
23 23 H 1.08996 * 109.46878 * 55.07545 * 1 2 3
24 24 H 1.08997 * 109.46791 * 295.07478 * 1 2 3
25 25 H 0.97001 * 120.00027 * 179.97438 * 7 6 4
26 26 H 0.97000 * 119.99493 * 359.97438 * 14 12 2
27 27 H 1.08995 * 109.47033 * 300.00320 * 15 14 12
28 28 H 1.08997 * 109.46818 * 59.99864 * 15 14 12
29 29 H 1.07996 * 126.28641 * 359.97438 * 17 16 15
30 30 H 1.07998 * 126.28907 * 180.02562 * 18 17 16
31 31 H 1.07998 * 125.88952 * 179.97438 * 19 18 17
32 32 H 1.08997 * 109.46845 * 270.19373 * 21 20 19
33 33 H 1.09006 * 109.46800 * 30.19011 * 21 20 19
34 34 H 1.08997 * 109.47639 * 150.19181 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7105 -1.2305
5 1 2.1339 -1.7856 -1.2297
6 6 2.3624 0.0123 -2.3573
7 7 2.7082 -0.6128 -3.4616
8 14 2.3182 1.8793 -2.3157
9 1 3.6038 2.3929 -1.7787
10 1 2.1127 2.4003 -3.6909
11 1 1.2029 2.3287 -1.4442
12 6 2.0324 -0.7104 1.2305
13 8 2.7296 -1.6966 1.1192
14 7 1.7068 -0.2500 2.4546
15 6 2.1956 -0.9403 3.6507
16 6 1.6937 -0.2297 4.8812
17 6 0.5869 -0.5490 5.5824
18 6 0.4863 0.3644 6.6504
19 6 1.5356 1.2067 6.5615
20 7 2.2836 0.8432 5.4811
21 6 3.5153 1.4997 5.0357
22 1 -0.3633 -1.0239 -0.0882
23 1 -0.3633 0.5883 -0.8426
24 1 -0.3633 0.4355 0.9308
25 1 2.9400 -0.1044 -4.2545
26 1 1.1495 0.5389 2.5435
27 1 1.8327 -1.9681 3.6508
28 1 3.2856 -0.9399 3.6505
29 1 -0.0969 -1.3560 5.3647
30 1 -0.2884 0.3855 7.4026
31 1 1.7489 2.0254 7.2327
32 1 3.2690 2.2962 4.3337
33 1 4.0338 1.9217 5.8967
34 1 4.1594 0.7697 4.5456
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000829351869.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:42:09
Heat of formation + Delta-G solvation = 8.026327 kcal
Electronic energy + Delta-G solvation = -16459.420865 eV
Core-core repulsion = 13779.170612 eV
Total energy + Delta-G solvation = -2680.250253 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 236.127 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.29120 -38.76477 -34.26795 -33.63349 -32.91906 -31.37383 -29.58258 -26.45178
-25.41191 -25.22049 -22.17817 -20.63728 -19.58915 -19.05359 -17.17824 -17.03857
-15.70350 -15.64142 -14.92021 -14.68027 -14.10420 -13.95719 -13.37373 -13.11740
-12.70717 -12.49918 -12.43265 -12.37868 -12.13429 -12.07008 -11.65933 -11.33647
-11.09057 -10.75368 -10.26183 -9.81557 -9.16622 -8.80592 -8.65968 -8.57948
-8.50291 -8.06396 -6.06213 -4.05143 2.08836 2.87092 2.94444 3.23573
3.30064 3.32820 3.64510 4.04663 4.38190 4.65936 4.72580 5.01083
5.02357 5.23745 5.28420 5.38722 5.56067 5.71522 5.76182 6.06895
6.17846 6.21759 6.30920 6.41978 6.55207 6.84864 6.94057 6.99690
7.16902 7.20225 7.28384 7.56775 8.17278 8.55457 9.09817 9.16203
9.53488 11.07196
Molecular weight = 236.13amu
Principal moments of inertia in cm(-1)
A = 0.036829 B = 0.005843 C = 0.005634
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 760.088532 B = 4790.546787 C = 4968.639171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.004 4.004
3 H 0.053 0.947
4 C -0.494 4.494
5 H 0.086 0.914
6 C 0.071 3.929
7 N -0.895 5.895
8 Si 0.871 3.129
9 H -0.276 1.276
10 H -0.286 1.286
11 H -0.265 1.265
12 C 0.519 3.481
13 O -0.530 6.530
14 N -0.746 5.746
15 C 0.190 3.810
16 C 0.001 3.999
17 C -0.180 4.180
18 C -0.204 4.204
19 C -0.014 4.014
20 N -0.443 5.443
21 C 0.069 3.931
22 H 0.052 0.948
23 H 0.053 0.947
24 H 0.026 0.974
25 H 0.264 0.736
26 H 0.395 0.605
27 H 0.083 0.917
28 H 0.064 0.936
29 H 0.136 0.864
30 H 0.134 0.866
31 H 0.160 0.840
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.085 0.915
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.493 6.867 18.849 20.215
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.026 4.026
3 H 0.070 0.930
4 C -0.532 4.532
5 H 0.104 0.896
6 C -0.130 4.130
7 N -0.533 5.533
8 Si 0.698 3.302
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.190 1.190
12 C 0.307 3.693
13 O -0.404 6.404
14 N -0.401 5.401
15 C 0.066 3.934
16 C -0.111 4.111
17 C -0.205 4.205
18 C -0.228 4.228
19 C -0.144 4.144
20 N -0.119 5.119
21 C -0.073 4.073
22 H 0.072 0.928
23 H 0.072 0.928
24 H 0.046 0.954
25 H 0.074 0.926
26 H 0.229 0.771
27 H 0.101 0.899
28 H 0.082 0.918
29 H 0.154 0.846
30 H 0.152 0.848
31 H 0.177 0.823
32 H 0.093 0.907
33 H 0.100 0.900
34 H 0.104 0.896
Dipole moment (debyes) X Y Z Total
from point charges -1.560 6.307 18.410 19.523
hybrid contribution -0.187 1.517 0.074 1.531
sum -1.748 7.825 18.484 20.148
Atomic orbital electron populations
1.21945 0.96719 1.01427 0.99064 1.19344 0.94120 0.96836 0.92261
0.92953 1.20758 1.42861 0.96207 0.93374 0.89586 1.25028 0.94718
0.97940 0.95358 1.69885 1.46112 1.35643 1.01662 0.86964 0.78892
0.86835 0.77476 1.20231 1.21235 1.18955 1.21804 0.79006 0.84601
0.83873 1.90586 1.37069 1.26273 1.86509 1.46480 1.55656 1.32818
1.05190 1.19520 0.98446 0.95423 0.80056 1.20429 0.97654 0.93789
0.99208 1.20772 0.98726 1.03012 0.97999 1.20869 1.00754 0.99121
1.02079 1.21799 0.95390 1.03471 0.93787 1.43973 1.20523 1.24730
1.22669 1.22048 0.85065 0.98803 1.01335 0.92843 0.92759 0.95450
0.92560 0.77120 0.89885 0.91756 0.84583 0.84764 0.82271 0.90734
0.89964 0.89605
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.70 9.12 37.16 0.34 -2.36 16
2 C 0.00 -0.09 2.30 -92.92 -0.21 -0.30 16
3 H 0.05 1.19 5.29 -51.93 -0.27 0.91 16
4 C -0.49 -14.23 8.36 -34.44 -0.29 -14.52 16
5 H 0.09 2.82 7.61 -52.49 -0.40 2.42 16
6 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16
7 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16
8 Si 0.87 20.93 26.99 -169.99 -4.59 16.34 16
9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16
11 H -0.26 -5.88 6.82 56.52 0.39 -5.49 16
12 C 0.52 11.48 7.15 -10.99 -0.08 11.40 16
13 O -0.53 -13.86 15.77 5.55 0.09 -13.77 16
14 N -0.75 -12.61 5.41 -61.48 -0.33 -12.95 16
15 C 0.19 2.84 5.83 -5.19 -0.03 2.81 16
16 C 0.00 0.01 6.26 -81.79 -0.51 -0.50 16
17 C -0.18 -2.29 10.77 -39.78 -0.43 -2.71 16
18 C -0.20 -2.30 10.86 -39.78 -0.43 -2.73 16
19 C -0.01 -0.15 11.43 -16.75 -0.19 -0.34 16
20 N -0.44 -5.05 3.15 -119.90 -0.38 -5.43 16
21 C 0.07 0.61 10.92 59.85 0.65 1.27 16
22 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
23 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16
24 H 0.03 0.45 7.43 -51.93 -0.39 0.06 16
25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
26 H 0.40 5.94 7.82 -40.82 -0.32 5.62 16
27 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16
28 H 0.06 0.98 7.20 -51.93 -0.37 0.60 16
29 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16
30 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16
31 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16
32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16
34 H 0.09 0.80 7.11 -51.93 -0.37 0.43 16
LS Contribution 290.43 15.07 4.38 4.38
Total: -1.00 -33.83 290.43 -6.00 -39.82
By element:
Atomic # 1 Polarization: 9.16 SS G_CDS: -4.66 Total: 4.50 kcal
Atomic # 6 Polarization: -4.76 SS G_CDS: -1.28 Total: -6.04 kcal
Atomic # 7 Polarization: -45.29 SS G_CDS: 0.06 Total: -45.23 kcal
Atomic # 8 Polarization: -13.86 SS G_CDS: 0.09 Total: -13.77 kcal
Atomic # 14 Polarization: 20.93 SS G_CDS: -4.59 Total: 16.34 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -33.83 -6.00 -39.82 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000829351869.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.850 kcal
(2) G-P(sol) polarization free energy of solvation -33.828 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.022 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.996 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.824 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.026 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds